Wall clock time and date at job start Tue Mar 31 2020 12:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47133 * 2 1 4 4 C 1.53005 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.48827 * 54.96854 * 4 3 2 6 6 C 1.53089 * 109.48170 * 174.99996 * 4 3 2 7 7 C 1.53178 * 109.21306 * 177.61764 * 6 4 3 8 8 H 1.09005 * 109.54231 * 183.02916 * 7 6 4 9 9 C 1.50707 * 109.53887 * 62.85814 * 7 6 4 10 10 O 1.21278 * 119.99987 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99352 * 179.97438 * 9 7 6 12 12 C 1.39939 * 119.99599 * 175.08747 * 11 9 7 13 13 C 1.39288 * 119.94810 * 146.75568 * 12 11 9 14 14 C 1.38491 * 120.43030 * 179.97438 * 13 12 11 15 15 C 1.37682 * 120.32063 * 0.02562 * 14 13 12 16 16 C 1.40746 * 119.88854 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.21269 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99848 * 151.38745 * 17 16 15 19 19 C 1.39933 * 119.99904 * 331.38243 * 17 16 15 20 20 N 1.30829 * 120.00022 * 166.74274 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 346.73910 * 19 17 16 22 22 H 1.48502 * 109.47139 * 95.30743 * 21 19 17 23 23 H 1.48510 * 109.46764 * 215.30304 * 21 19 17 24 24 H 1.48490 * 109.47369 * 335.30454 * 21 19 17 25 25 C 1.38247 * 119.94779 * 326.48445 * 12 11 9 26 26 C 1.53178 * 109.03931 * 302.99114 * 7 6 4 27 27 C 1.53090 * 109.16331 * 56.97955 * 26 7 6 28 28 O 1.42897 * 109.41359 * 302.38989 * 27 26 7 29 29 H 1.08992 * 109.47180 * 59.99482 * 1 2 3 30 30 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46403 * 299.99493 * 1 2 3 32 32 H 1.09000 * 109.46403 * 240.00507 * 2 1 3 33 33 H 1.08992 * 109.47180 * 120.00518 * 2 1 3 34 34 H 1.09000 * 109.47163 * 60.00364 * 3 2 1 35 35 H 1.09004 * 109.47198 * 300.00090 * 3 2 1 36 36 H 1.09004 * 109.52056 * 57.68786 * 6 4 3 37 37 H 1.08997 * 109.52390 * 297.56029 * 6 4 3 38 38 H 0.96996 * 120.00520 * 355.09041 * 11 9 7 39 39 H 1.08003 * 119.78690 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.84030 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.05781 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00055 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.16019 * 359.97438 * 25 12 11 44 44 H 1.09003 * 109.52153 * 176.88280 * 26 7 6 45 45 H 1.08998 * 109.51952 * 297.07047 * 26 7 6 46 46 H 1.09004 * 109.48185 * 62.37268 * 27 26 7 47 47 H 1.08997 * 109.48086 * 182.40951 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9334 0.8527 -0.8423 6 6 4.0806 2.8802 -0.1264 7 6 5.6112 2.8787 -0.0666 8 1 5.9785 3.9044 -0.1016 9 6 6.1607 2.1062 -1.2382 10 8 5.4041 1.6059 -2.0432 11 7 7.4930 1.9724 -1.3918 12 6 8.0017 1.1705 -2.4196 13 6 9.2005 1.5132 -3.0405 14 6 9.7133 0.7264 -4.0583 15 6 9.0426 -0.4040 -4.4682 16 6 7.8295 -0.7623 -3.8509 17 6 7.1352 -1.9221 -4.2661 18 1 6.5111 -2.4575 -3.5659 19 6 7.2567 -2.3760 -5.5842 20 7 6.8362 -3.5724 -5.9054 21 14 8.0192 -1.2734 -6.8851 22 1 9.4623 -1.5955 -7.0230 23 1 7.3360 -1.4958 -8.1848 24 1 7.8655 0.1474 -6.4819 25 6 7.3164 0.0362 -2.8134 26 6 6.0596 2.2161 1.2397 27 6 5.4739 0.8036 1.3135 28 8 4.0496 0.8746 1.2215 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6847 3.4803 0.6929 37 1 3.7536 3.3010 -1.0772 38 1 8.0992 2.4319 -0.7901 39 1 9.7341 2.3978 -2.7255 40 1 10.6439 1.0008 -4.5328 41 1 9.4466 -1.0147 -5.2621 42 1 6.9200 -3.8869 -6.8192 43 1 6.3892 -0.2330 -2.3294 44 1 7.1479 2.1609 1.2653 45 1 5.7037 2.8029 2.0865 46 1 5.8621 0.2055 0.4891 47 1 5.7544 0.3429 2.2607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456751210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:27 Heat of formation + Delta-G solvation = -83.040340 kcal Electronic energy + Delta-G solvation = -27304.466844 eV Core-core repulsion = 23643.946224 eV Total energy + Delta-G solvation = -3660.520619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74218 -38.73482 -37.29877 -35.04838 -34.53888 -33.71378 -33.13810 -31.20260 -30.32035 -28.77518 -27.30523 -25.29933 -24.81924 -23.02932 -22.33318 -20.96146 -20.91752 -20.79711 -19.15833 -17.79068 -16.60378 -16.40622 -16.27840 -15.94812 -15.46345 -15.05765 -14.65827 -14.58210 -14.38718 -14.03144 -13.89536 -13.47177 -13.02915 -12.85733 -12.75783 -12.60683 -12.53356 -12.25338 -11.99450 -11.90334 -11.64027 -11.57453 -11.33700 -11.08354 -10.91810 -10.73412 -10.69788 -10.67954 -10.56814 -10.28594 -9.97998 -9.75173 -9.58600 -9.30125 -9.09553 -8.95045 -7.68711 -7.14599 -6.91435 -4.48269 2.33818 2.61737 3.06575 3.14140 3.25306 3.35911 3.45689 3.84584 4.01273 4.47277 4.50669 4.65003 4.68846 4.82387 5.01825 5.11798 5.16883 5.27223 5.34351 5.44264 5.49715 5.51128 5.62309 5.67504 5.72013 5.78111 5.88148 5.89669 5.94407 5.95956 5.99383 6.15252 6.16472 6.22225 6.34929 6.37612 6.44987 6.62750 6.73716 6.79457 7.17452 7.28422 7.34112 7.49281 7.59028 7.88086 7.98210 8.05082 8.36218 8.57665 8.65621 8.81875 10.10967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004172 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.164579 B = 6709.542008 C = 8227.673822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.077 3.923 5 H 0.089 0.911 6 C -0.127 4.127 7 C -0.111 4.111 8 H 0.098 0.902 9 C 0.506 3.494 10 O -0.508 6.508 11 N -0.669 5.669 12 C 0.164 3.836 13 C -0.267 4.267 14 C -0.063 4.063 15 C -0.249 4.249 16 C 0.103 3.897 17 C -0.437 4.437 18 H 0.090 0.910 19 C 0.082 3.918 20 N -0.811 5.811 21 Si 0.916 3.084 22 H -0.272 1.272 23 H -0.294 1.294 24 H -0.241 1.241 25 C -0.197 4.197 26 C -0.145 4.145 27 C 0.058 3.942 28 O -0.379 6.379 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.285 0.715 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 11.826 12.564 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.143 4.143 4 C 0.019 3.981 5 H 0.107 0.893 6 C -0.165 4.165 7 C -0.133 4.133 8 H 0.117 0.883 9 C 0.292 3.708 10 O -0.382 6.382 11 N -0.313 5.313 12 C 0.072 3.928 13 C -0.288 4.288 14 C -0.082 4.082 15 C -0.269 4.269 16 C 0.099 3.901 17 C -0.465 4.465 18 H 0.108 0.892 19 C -0.136 4.136 20 N -0.435 5.435 21 Si 0.743 3.257 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.164 1.164 25 C -0.219 4.219 26 C -0.183 4.183 27 C -0.019 4.019 28 O -0.299 6.299 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.660 11.163 12.003 17.041 hybrid contribution 1.027 0.772 -0.597 1.417 sum -3.633 11.935 11.406 16.904 Atomic orbital electron populations 1.21772 0.96231 1.01447 1.01357 1.21485 0.95234 0.96675 1.02800 1.21577 0.92919 0.97722 1.02121 1.22484 0.94400 0.93191 0.87982 0.89280 1.21979 0.92728 0.98682 1.03076 1.21429 0.97764 1.00437 0.93624 0.88345 1.20618 0.82371 0.81101 0.86677 1.90730 1.57078 1.46974 1.43403 1.43526 1.06842 1.48729 1.32207 1.17499 0.94431 0.90824 0.90067 1.20033 1.00029 1.03800 1.04948 1.20342 0.97739 0.94458 0.95685 1.20958 0.98305 1.01207 1.06415 1.17607 0.90396 0.91321 0.90793 1.19505 1.24194 1.06183 0.96657 0.89199 1.26172 0.92661 0.94596 1.00220 1.69661 1.36405 1.16111 1.21331 0.86264 0.78284 0.83247 0.77856 1.19881 1.22198 1.16388 1.20907 1.01489 0.94820 1.04658 1.22184 1.01391 0.98173 0.96542 1.22535 0.81727 0.95189 1.02440 1.87888 1.20197 1.82690 1.39090 0.92935 0.92882 0.93066 0.91774 0.91378 0.91741 0.90748 0.90770 0.90152 0.76669 0.88734 0.88515 0.88418 0.90445 0.86951 0.90460 0.89995 0.92822 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.54 5.83 -26.73 -0.16 -1.69 16 3 C -0.11 -1.27 4.93 -26.73 -0.13 -1.41 16 4 C 0.08 1.06 2.36 -26.68 -0.06 1.00 16 5 H 0.09 1.55 5.81 -51.93 -0.30 1.25 16 6 C -0.13 -1.51 4.55 -26.59 -0.12 -1.63 16 7 C -0.11 -1.28 3.04 -91.58 -0.28 -1.56 16 8 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 9 C 0.51 8.19 5.56 -10.98 -0.06 8.13 16 10 O -0.51 -10.43 11.52 5.56 0.06 -10.37 16 11 N -0.67 -10.74 5.18 -9.91 -0.05 -10.79 16 12 C 0.16 3.42 6.27 -83.76 -0.53 2.90 16 13 C -0.27 -5.38 9.97 -39.10 -0.39 -5.77 16 14 C -0.06 -1.36 10.02 -39.69 -0.40 -1.76 16 15 C -0.25 -6.09 6.92 -38.84 -0.27 -6.36 16 16 C 0.10 2.68 5.19 -106.85 -0.55 2.13 16 17 C -0.44 -12.24 9.61 -37.74 -0.36 -12.60 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.08 2.21 5.47 -17.34 -0.09 2.12 16 20 N -0.81 -22.16 13.93 55.55 0.77 -21.38 16 21 Si 0.92 21.53 24.37 -169.99 -4.14 17.38 16 22 H -0.27 -6.12 6.77 56.52 0.38 -5.74 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.85 6.48 56.52 0.37 -5.48 16 25 C -0.20 -4.82 8.39 -38.68 -0.32 -5.14 16 26 C -0.14 -1.44 5.57 -26.59 -0.15 -1.59 16 27 C 0.06 0.72 6.62 37.20 0.25 0.97 16 28 O -0.38 -5.32 9.96 -35.23 -0.35 -5.67 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.00 8.03 -51.93 -0.42 0.59 16 38 H 0.40 4.81 8.40 -40.82 -0.34 4.47 16 39 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.10 2.37 4.20 -52.48 -0.22 2.15 16 42 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 43 H 0.11 2.85 6.41 -52.49 -0.34 2.51 16 44 H 0.08 0.66 7.64 -51.93 -0.40 0.26 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.81 7.38 -51.93 -0.38 0.42 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -30.66 365.07 -8.96 -39.62 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.49 Total: 9.16 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.26 Total: -23.45 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.72 Total: -32.18 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.29 Total: -16.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.66 -8.96 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.423 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds