Wall clock time and date at job start Tue Mar 31 2020 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47133 * 2 1 4 4 C 1.53005 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.48827 * 54.96854 * 4 3 2 6 6 C 1.53089 * 109.48170 * 174.99996 * 4 3 2 7 7 C 1.53178 * 109.21306 * 177.61764 * 6 4 3 8 8 H 1.09005 * 109.54231 * 183.02916 * 7 6 4 9 9 C 1.50707 * 109.53887 * 62.85814 * 7 6 4 10 10 O 1.21278 * 119.99987 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99352 * 179.97438 * 9 7 6 12 12 C 1.39939 * 119.99599 * 175.08747 * 11 9 7 13 13 C 1.39288 * 119.94810 * 146.75568 * 12 11 9 14 14 C 1.38491 * 120.43030 * 179.97438 * 13 12 11 15 15 C 1.37682 * 120.32063 * 0.02562 * 14 13 12 16 16 C 1.40746 * 119.88854 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.21269 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99848 * 151.38745 * 17 16 15 19 19 C 1.39933 * 119.99904 * 331.38243 * 17 16 15 20 20 N 1.30829 * 120.00022 * 166.74274 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 346.73910 * 19 17 16 22 22 H 1.48502 * 109.47139 * 95.30743 * 21 19 17 23 23 H 1.48510 * 109.46764 * 215.30304 * 21 19 17 24 24 H 1.48490 * 109.47369 * 335.30454 * 21 19 17 25 25 C 1.38247 * 119.94779 * 326.48445 * 12 11 9 26 26 C 1.53178 * 109.03931 * 302.99114 * 7 6 4 27 27 C 1.53090 * 109.16331 * 56.97955 * 26 7 6 28 28 O 1.42897 * 109.41359 * 302.38989 * 27 26 7 29 29 H 1.08992 * 109.47180 * 59.99482 * 1 2 3 30 30 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46403 * 299.99493 * 1 2 3 32 32 H 1.09000 * 109.46403 * 240.00507 * 2 1 3 33 33 H 1.08992 * 109.47180 * 120.00518 * 2 1 3 34 34 H 1.09000 * 109.47163 * 60.00364 * 3 2 1 35 35 H 1.09004 * 109.47198 * 300.00090 * 3 2 1 36 36 H 1.09004 * 109.52056 * 57.68786 * 6 4 3 37 37 H 1.08997 * 109.52390 * 297.56029 * 6 4 3 38 38 H 0.96996 * 120.00520 * 355.09041 * 11 9 7 39 39 H 1.08003 * 119.78690 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.84030 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.05781 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00055 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.16019 * 359.97438 * 25 12 11 44 44 H 1.09003 * 109.52153 * 176.88280 * 26 7 6 45 45 H 1.08998 * 109.51952 * 297.07047 * 26 7 6 46 46 H 1.09004 * 109.48185 * 62.37268 * 27 26 7 47 47 H 1.08997 * 109.48086 * 182.40951 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9334 0.8527 -0.8423 6 6 4.0806 2.8802 -0.1264 7 6 5.6112 2.8787 -0.0666 8 1 5.9785 3.9044 -0.1016 9 6 6.1607 2.1062 -1.2382 10 8 5.4041 1.6059 -2.0432 11 7 7.4930 1.9724 -1.3918 12 6 8.0017 1.1705 -2.4196 13 6 9.2005 1.5132 -3.0405 14 6 9.7133 0.7264 -4.0583 15 6 9.0426 -0.4040 -4.4682 16 6 7.8295 -0.7623 -3.8509 17 6 7.1352 -1.9221 -4.2661 18 1 6.5111 -2.4575 -3.5659 19 6 7.2567 -2.3760 -5.5842 20 7 6.8362 -3.5724 -5.9054 21 14 8.0192 -1.2734 -6.8851 22 1 9.4623 -1.5955 -7.0230 23 1 7.3360 -1.4958 -8.1848 24 1 7.8655 0.1474 -6.4819 25 6 7.3164 0.0362 -2.8134 26 6 6.0596 2.2161 1.2397 27 6 5.4739 0.8036 1.3135 28 8 4.0496 0.8746 1.2215 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6847 3.4803 0.6929 37 1 3.7536 3.3010 -1.0772 38 1 8.0992 2.4319 -0.7901 39 1 9.7341 2.3978 -2.7255 40 1 10.6439 1.0008 -4.5328 41 1 9.4466 -1.0147 -5.2621 42 1 6.9200 -3.8869 -6.8192 43 1 6.3892 -0.2330 -2.3294 44 1 7.1479 2.1609 1.2653 45 1 5.7037 2.8029 2.0865 46 1 5.8621 0.2055 0.4891 47 1 5.7544 0.3429 2.2607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456751210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:26 Heat of formation + Delta-G solvation = -102.677225 kcal Electronic energy + Delta-G solvation = -27305.318363 eV Core-core repulsion = 23643.946224 eV Total energy + Delta-G solvation = -3661.372139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98145 -40.11971 -38.88592 -36.28211 -35.97608 -35.10482 -34.63572 -32.29156 -32.09013 -30.44465 -28.27805 -27.20373 -25.97410 -24.14244 -23.59289 -22.73722 -22.27122 -21.96879 -20.46446 -19.61039 -18.03865 -17.64381 -17.46711 -17.30042 -17.06534 -16.45694 -16.29257 -15.79982 -15.49511 -15.28585 -15.27788 -14.86910 -14.62608 -14.33451 -14.03446 -13.93472 -13.64926 -13.56701 -13.38657 -13.27342 -12.89918 -12.85049 -12.66947 -12.51849 -12.46343 -12.26662 -11.90828 -11.80165 -11.67834 -11.63822 -11.58109 -11.46454 -11.14766 -10.81220 -10.66066 -10.22089 -9.56889 -8.92409 -8.85124 -6.57400 0.64152 0.77886 1.20958 1.38912 1.45744 1.69515 2.09618 2.17126 2.59194 2.82797 3.48026 3.48752 3.67121 3.75938 3.86473 4.03036 4.11297 4.21755 4.29428 4.31463 4.41204 4.48079 4.50633 4.57068 4.66033 4.69608 4.77185 4.81192 4.83229 4.87641 4.93174 4.97720 4.99096 5.00053 5.03987 5.08016 5.18648 5.25933 5.32971 5.37006 5.43881 5.59442 5.69391 5.76627 5.89416 6.20779 6.28540 6.34854 6.57875 6.71097 6.77361 7.29595 8.17223 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004172 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.164579 B = 6709.542008 C = 8227.673822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.102 4.102 4 C 0.074 3.926 5 H 0.039 0.961 6 C -0.124 4.124 7 C -0.101 4.101 8 H 0.142 0.858 9 C 0.499 3.501 10 O -0.558 6.558 11 N -0.657 5.657 12 C 0.172 3.828 13 C -0.240 4.240 14 C -0.064 4.064 15 C -0.263 4.263 16 C 0.082 3.918 17 C -0.484 4.484 18 H 0.042 0.958 19 C 0.041 3.959 20 N -0.857 5.857 21 Si 0.976 3.024 22 H -0.249 1.249 23 H -0.282 1.282 24 H -0.252 1.252 25 C -0.222 4.222 26 C -0.135 4.135 27 C 0.049 3.951 28 O -0.389 6.389 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.424 0.576 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.294 0.706 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.011 0.989 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 16.680 14.244 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.139 4.139 4 C 0.017 3.983 5 H 0.057 0.943 6 C -0.162 4.162 7 C -0.122 4.122 8 H 0.160 0.840 9 C 0.288 3.712 10 O -0.435 6.435 11 N -0.304 5.304 12 C 0.078 3.922 13 C -0.260 4.260 14 C -0.082 4.082 15 C -0.282 4.282 16 C 0.079 3.921 17 C -0.514 4.514 18 H 0.060 0.940 19 C -0.172 4.172 20 N -0.484 5.484 21 Si 0.800 3.200 22 H -0.174 1.174 23 H -0.209 1.209 24 H -0.176 1.176 25 C -0.244 4.244 26 C -0.173 4.173 27 C -0.028 4.028 28 O -0.308 6.308 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.133 0.867 46 H 0.030 0.970 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.441 16.037 13.732 21.253 hybrid contribution 0.369 -0.617 -0.895 1.148 sum -2.073 15.420 12.837 20.171 Atomic orbital electron populations 1.21734 0.94162 1.01969 1.02398 1.21469 0.97071 0.96945 1.00844 1.21577 0.91778 0.97338 1.03234 1.22396 0.95505 0.94076 0.86358 0.94284 1.21986 0.93264 0.97092 1.03869 1.21539 0.97179 1.01763 0.91759 0.84041 1.21667 0.81847 0.80345 0.87297 1.90746 1.58282 1.48827 1.45638 1.43442 1.07533 1.47931 1.31474 1.17595 0.94305 0.89712 0.90586 1.20643 0.98687 1.04136 1.02569 1.20868 0.98826 0.92974 0.95573 1.21098 0.97756 1.02710 1.06660 1.17734 0.91384 0.91101 0.91923 1.19455 1.26321 1.08377 0.97262 0.94010 1.26919 0.93074 0.95755 1.01424 1.69700 1.38814 1.17544 1.22312 0.85362 0.78799 0.80370 0.75501 1.17384 1.20907 1.17625 1.20834 1.01410 0.96867 1.05307 1.22205 1.02606 0.95990 0.96458 1.22706 0.81124 0.97158 1.01783 1.87868 1.21199 1.83121 1.38658 0.92478 0.92711 0.91327 0.94790 0.92348 0.89576 0.90359 0.87465 0.91072 0.73706 0.83618 0.84127 0.88416 0.89570 0.89946 0.88270 0.86747 0.97033 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.99 0.71 -2.28 16 2 C -0.13 -3.33 5.83 30.60 0.18 -3.15 16 3 C -0.10 -2.48 4.93 30.59 0.15 -2.33 16 4 C 0.07 2.12 2.36 30.63 0.07 2.19 16 5 H 0.04 1.52 5.81 -2.39 -0.01 1.51 16 6 C -0.12 -2.72 4.55 30.68 0.14 -2.58 16 7 C -0.10 -2.01 3.04 -11.42 -0.03 -2.04 16 8 H 0.14 1.72 8.14 -2.38 -0.02 1.70 16 9 C 0.50 15.76 5.56 87.66 0.49 16.24 16 10 O -0.56 -24.16 11.52 -3.02 -0.03 -24.20 16 11 N -0.66 -19.49 5.18 -303.64 -1.57 -21.06 16 12 C 0.17 6.92 6.27 38.10 0.24 7.16 16 13 C -0.24 -8.56 9.97 22.58 0.23 -8.33 16 14 C -0.06 -2.50 10.02 22.20 0.22 -2.28 16 15 C -0.26 -12.68 6.92 22.75 0.16 -12.52 16 16 C 0.08 4.50 5.19 -21.31 -0.11 4.39 16 17 C -0.48 -29.82 9.61 23.46 0.23 -29.59 16 18 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 19 C 0.04 2.39 5.47 85.25 0.47 2.85 16 20 N -0.86 -50.23 13.93 21.82 0.30 -49.93 16 21 Si 0.98 45.51 24.37 68.60 1.67 47.18 16 22 H -0.25 -10.55 6.77 99.48 0.67 -9.87 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.25 -12.08 6.48 99.48 0.64 -11.44 16 25 C -0.22 -11.44 8.39 22.85 0.19 -11.25 16 26 C -0.14 -2.17 5.57 30.68 0.17 -2.00 16 27 C 0.05 1.20 6.62 72.01 0.48 1.67 16 28 O -0.39 -10.94 9.96 -148.98 -1.48 -12.43 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.62 7.83 -2.39 -0.02 1.60 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.80 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.70 8.03 -2.39 -0.02 1.68 16 38 H 0.42 8.19 8.40 -92.71 -0.78 7.41 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.10 4.66 4.20 -2.91 -0.01 4.65 16 42 H 0.29 15.39 8.30 -92.71 -0.77 14.62 16 43 H 0.08 4.66 6.41 -2.91 -0.02 4.64 16 44 H 0.10 1.20 7.64 -2.39 -0.02 1.18 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.01 0.37 7.38 -2.39 -0.02 0.35 16 47 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.95 365.07 2.95 -74.00 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.09 Total: 30.27 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.97 Total: -43.84 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.27 Total: -70.98 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.52 Total: -36.62 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -76.95 2.95 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.676 kcal (2) G-P(sol) polarization free energy of solvation -76.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds