Wall clock time and date at job start Tue Mar 31 2020 11:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99780 * 2 1 4 4 C 1.52999 * 109.46964 * 125.00491 * 3 2 1 5 5 C 1.52999 * 109.46900 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47298 * 55.00185 * 5 4 3 7 7 C 1.52998 * 109.46946 * 174.99845 * 5 4 3 8 8 O 1.42904 * 109.47426 * 54.99998 * 7 5 4 9 9 N 1.46493 * 109.47252 * 294.99527 * 5 4 3 10 10 C 1.34777 * 119.99965 * 154.99709 * 9 5 4 11 11 O 1.21281 * 120.00396 * 0.02562 * 10 9 5 12 12 C 1.50705 * 119.99941 * 180.02562 * 10 9 5 13 13 C 1.52996 * 109.47003 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46921 * 55.00778 * 13 12 10 15 15 C 1.50694 * 109.47457 * 295.00261 * 13 12 10 16 16 H 1.07993 * 120.00152 * 325.85241 * 15 13 12 17 17 C 1.37888 * 119.99986 * 145.85230 * 15 13 12 18 18 N 1.31509 * 119.99716 * 6.11495 * 17 15 13 19 19 Si 1.86797 * 119.99687 * 186.11939 * 17 15 13 20 20 H 1.48496 * 109.47130 * 89.99924 * 19 17 15 21 21 H 1.48504 * 109.46827 * 209.99798 * 19 17 15 22 22 H 1.48493 * 109.47238 * 329.99521 * 19 17 15 23 23 C 1.50702 * 109.47259 * 175.00191 * 13 12 10 24 24 C 1.38238 * 119.99994 * 63.45678 * 23 13 12 25 25 C 1.38235 * 120.00005 * 179.79140 * 24 23 13 26 26 C 1.38231 * 119.99990 * 0.44025 * 25 24 23 27 27 C 1.38237 * 119.99841 * 359.81770 * 26 25 24 28 28 C 1.38230 * 120.00434 * 359.97159 * 27 26 25 29 29 H 1.08005 * 119.99784 * 180.02562 * 1 2 3 30 30 H 1.07991 * 120.00303 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00236 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47154 * 5.00652 * 3 2 1 33 33 H 1.08995 * 109.46989 * 245.00322 * 3 2 1 34 34 H 1.08997 * 109.47520 * 60.00161 * 4 3 2 35 35 H 1.09003 * 109.47099 * 300.00048 * 4 3 2 36 36 H 1.08997 * 109.47490 * 174.99981 * 7 5 4 37 37 H 1.09002 * 109.47480 * 295.00097 * 7 5 4 38 38 H 0.96698 * 114.00123 * 180.02562 * 8 7 5 39 39 H 0.97005 * 120.00115 * 335.01067 * 9 5 4 40 40 H 1.08999 * 109.47159 * 300.00767 * 12 10 9 41 41 H 1.09005 * 109.46734 * 60.00799 * 12 10 9 42 42 H 0.97006 * 119.99678 * 179.97438 * 18 17 15 43 43 H 1.08002 * 119.99340 * 0.02562 * 24 23 13 44 44 H 1.07996 * 119.99651 * 180.27824 * 25 24 23 45 45 H 1.08001 * 120.00106 * 179.83248 * 26 25 24 46 46 H 1.08006 * 119.99485 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.00445 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 1 3.0910 3.4866 1.1823 7 6 4.6792 2.7394 2.4311 8 8 5.5285 1.5917 2.4910 9 7 4.6418 2.7367 -0.0142 10 6 5.0047 3.9382 -0.5053 11 8 4.6344 4.9545 0.0431 12 6 5.8706 4.0187 -1.7362 13 6 6.1341 5.4863 -2.0791 14 1 6.5623 5.9906 -1.2128 15 6 4.8378 6.1540 -2.4593 16 1 4.0758 5.5955 -2.9825 17 6 4.6244 7.4781 -2.1391 18 7 5.5948 8.1914 -1.6108 19 14 2.9571 8.2585 -2.4556 20 1 2.0954 8.0879 -1.2583 21 1 3.1334 9.7061 -2.7363 22 1 2.3171 7.6022 -3.6237 23 6 7.0983 5.5668 -3.2345 24 6 6.7421 5.0567 -4.4689 25 6 7.6248 5.1345 -5.5299 26 6 8.8673 5.7142 -5.3541 27 6 9.2256 6.2195 -4.1183 28 6 8.3413 6.1457 -3.0585 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.7401 0.5067 1.0919 35 1 2.4774 1.2355 2.1130 36 1 5.2898 3.6412 2.3878 37 1 4.0476 2.7706 3.3189 38 1 6.1151 1.5760 3.2596 39 1 4.9381 1.9238 -0.4528 40 1 6.8181 3.5141 -1.5474 41 1 5.3617 3.5360 -2.5706 42 1 5.4449 9.1230 -1.3859 43 1 5.7725 4.6008 -4.6053 44 1 7.3447 4.7399 -6.4954 45 1 9.5581 5.7725 -6.1822 46 1 10.1966 6.6721 -3.9809 47 1 8.6213 6.5401 -2.0929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456770880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:51 Heat of formation + Delta-G solvation = -59.473714 kcal Electronic energy + Delta-G solvation = -26612.944611 eV Core-core repulsion = 22953.445917 eV Total energy + Delta-G solvation = -3659.498694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.36999 -38.30744 -37.12867 -35.80106 -34.14949 -33.65185 -31.51859 -30.84091 -29.97348 -28.80477 -27.86152 -25.44781 -23.72062 -22.79438 -21.61557 -20.83825 -20.05432 -19.76353 -19.18770 -17.40484 -16.57928 -16.20925 -15.94085 -15.67219 -15.27346 -14.71762 -14.47061 -14.26777 -14.07951 -13.85849 -13.77746 -13.34393 -13.13493 -12.74975 -12.56560 -12.41049 -12.26688 -11.92698 -11.78230 -11.58293 -11.47302 -11.39463 -10.87377 -10.83402 -10.73978 -10.64747 -10.53687 -10.22609 -10.02910 -9.97105 -9.42759 -9.40604 -9.02570 -8.79554 -8.47135 -8.28548 -8.01153 -7.56884 -5.90386 -3.89297 2.18326 2.32245 2.38262 3.40079 3.45490 3.47218 3.60526 3.76327 4.36783 4.54573 4.61302 4.78802 4.95104 5.06371 5.19333 5.28230 5.42978 5.44504 5.55213 5.64953 5.69134 5.76062 5.76231 5.80096 5.86484 5.89332 5.96768 6.13571 6.16215 6.25700 6.29632 6.34443 6.44654 6.53356 6.58088 6.68565 6.85499 6.95140 7.04201 7.08715 7.34273 7.48430 7.56952 7.61504 7.89289 7.98665 8.08790 8.21215 8.42720 9.10328 9.17033 9.72364 11.19933 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.003874 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.380283 B = 7225.833533 C = 7948.372027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.098 4.098 4 C -0.113 4.113 5 C 0.150 3.850 6 H 0.097 0.903 7 C 0.063 3.937 8 O -0.569 6.569 9 N -0.737 5.737 10 C 0.513 3.487 11 O -0.500 6.500 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.071 0.929 15 C -0.490 4.490 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.882 5.882 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.374 0.626 39 H 0.394 0.606 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 -14.863 4.147 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.165 4.165 3 C -0.135 4.135 4 C -0.151 4.151 5 C 0.045 3.955 6 H 0.115 0.885 7 C -0.016 4.016 8 O -0.374 6.374 9 N -0.392 5.392 10 C 0.300 3.700 11 O -0.372 6.372 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.089 0.911 15 C -0.527 4.527 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.220 0.780 39 H 0.227 0.773 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.441 -14.010 4.061 14.658 hybrid contribution -0.562 0.408 0.092 0.701 sum -2.003 -13.602 4.153 14.362 Atomic orbital electron populations 1.23841 0.96063 1.01660 1.02324 1.23010 0.95990 0.98610 0.98917 1.20821 0.98276 0.95075 0.99369 1.21675 0.97598 0.97380 0.98413 1.20909 0.91696 0.98596 0.84334 0.88526 1.22692 0.93013 0.88337 0.97566 1.86449 1.55798 1.44723 1.50431 1.46169 1.54511 1.08911 1.29598 1.20907 0.80739 0.82441 0.85900 1.90748 1.52883 1.34131 1.59430 1.21787 0.97462 1.02272 0.94764 1.17828 0.94099 0.88887 0.93055 0.91080 1.20672 0.99118 0.95680 1.37223 0.93205 1.24796 0.95922 0.97318 0.94383 1.69915 1.31298 1.08030 1.42664 0.86716 0.85291 0.78301 0.78329 1.20709 1.21550 1.20155 1.20748 0.92744 0.91722 0.96857 1.20946 0.98595 1.00929 0.92871 1.20970 0.94666 1.01162 0.98202 1.20787 0.97062 1.02656 0.96931 1.20979 0.99143 1.00835 0.93687 1.21084 0.93937 1.00164 0.98543 0.88817 0.88629 0.87559 0.91417 0.90442 0.90604 0.91115 0.92751 0.93533 0.78026 0.77282 0.91744 0.90639 0.93208 0.86930 0.87705 0.87843 0.87682 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 29.01 0.42 -1.48 16 2 C -0.15 -1.44 9.52 -36.02 -0.34 -1.79 16 3 C -0.10 -1.08 5.54 -27.88 -0.15 -1.23 16 4 C -0.11 -1.21 4.45 -26.73 -0.12 -1.33 16 5 C 0.15 2.03 2.37 -67.94 -0.16 1.87 16 6 H 0.10 1.51 7.58 -51.93 -0.39 1.11 16 7 C 0.06 0.79 6.85 37.16 0.25 1.04 16 8 O -0.57 -6.42 12.83 -35.23 -0.45 -6.88 16 9 N -0.74 -10.98 4.48 -53.81 -0.24 -11.22 16 10 C 0.51 10.09 7.54 -10.98 -0.08 10.01 16 11 O -0.50 -12.23 14.65 5.56 0.08 -12.15 16 12 C -0.12 -2.38 4.95 -27.88 -0.14 -2.51 16 13 C 0.08 1.92 1.67 -92.93 -0.16 1.77 16 14 H 0.07 1.96 6.98 -51.93 -0.36 1.59 16 15 C -0.49 -13.14 6.37 -34.44 -0.22 -13.36 16 16 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 18 N -0.88 -26.00 12.87 55.43 0.71 -25.29 16 19 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.35 8.86 -39.58 -0.35 -2.70 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 27 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 28 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 29 H 0.09 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.10 0.90 7.84 -52.49 -0.41 0.49 16 31 H 0.11 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 33 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 34 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.37 2.71 9.12 45.56 0.42 3.13 16 39 H 0.39 4.98 8.60 -40.82 -0.35 4.63 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.36 7.78 -51.93 -0.40 0.95 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.11 2.22 7.76 -52.49 -0.41 1.81 16 44 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.11 2.44 7.95 -52.49 -0.42 2.02 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -32.62 394.02 -9.10 -41.72 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.89 Total: 10.75 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.23 Total: -20.20 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.47 Total: -36.50 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.37 Total: -19.03 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.62 -9.10 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456770880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.751 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds