Wall clock time and date at job start Tue Mar 31 2020 11:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99780 * 2 1 4 4 C 1.52999 * 109.46964 * 125.00491 * 3 2 1 5 5 C 1.52999 * 109.46900 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47298 * 55.00185 * 5 4 3 7 7 C 1.52998 * 109.46946 * 174.99845 * 5 4 3 8 8 O 1.42904 * 109.47426 * 54.99998 * 7 5 4 9 9 N 1.46493 * 109.47252 * 294.99527 * 5 4 3 10 10 C 1.34777 * 119.99965 * 154.99709 * 9 5 4 11 11 O 1.21281 * 120.00396 * 0.02562 * 10 9 5 12 12 C 1.50705 * 119.99941 * 180.02562 * 10 9 5 13 13 C 1.52996 * 109.47003 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46921 * 55.00778 * 13 12 10 15 15 C 1.50694 * 109.47457 * 295.00261 * 13 12 10 16 16 H 1.07993 * 120.00152 * 325.85241 * 15 13 12 17 17 C 1.37888 * 119.99986 * 145.85230 * 15 13 12 18 18 N 1.31509 * 119.99716 * 6.11495 * 17 15 13 19 19 Si 1.86797 * 119.99687 * 186.11939 * 17 15 13 20 20 H 1.48496 * 109.47130 * 89.99924 * 19 17 15 21 21 H 1.48504 * 109.46827 * 209.99798 * 19 17 15 22 22 H 1.48493 * 109.47238 * 329.99521 * 19 17 15 23 23 C 1.50702 * 109.47259 * 175.00191 * 13 12 10 24 24 C 1.38238 * 119.99994 * 63.45678 * 23 13 12 25 25 C 1.38235 * 120.00005 * 179.79140 * 24 23 13 26 26 C 1.38231 * 119.99990 * 0.44025 * 25 24 23 27 27 C 1.38237 * 119.99841 * 359.81770 * 26 25 24 28 28 C 1.38230 * 120.00434 * 359.97159 * 27 26 25 29 29 H 1.08005 * 119.99784 * 180.02562 * 1 2 3 30 30 H 1.07991 * 120.00303 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00236 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47154 * 5.00652 * 3 2 1 33 33 H 1.08995 * 109.46989 * 245.00322 * 3 2 1 34 34 H 1.08997 * 109.47520 * 60.00161 * 4 3 2 35 35 H 1.09003 * 109.47099 * 300.00048 * 4 3 2 36 36 H 1.08997 * 109.47490 * 174.99981 * 7 5 4 37 37 H 1.09002 * 109.47480 * 295.00097 * 7 5 4 38 38 H 0.96698 * 114.00123 * 180.02562 * 8 7 5 39 39 H 0.97005 * 120.00115 * 335.01067 * 9 5 4 40 40 H 1.08999 * 109.47159 * 300.00767 * 12 10 9 41 41 H 1.09005 * 109.46734 * 60.00799 * 12 10 9 42 42 H 0.97006 * 119.99678 * 179.97438 * 18 17 15 43 43 H 1.08002 * 119.99340 * 0.02562 * 24 23 13 44 44 H 1.07996 * 119.99651 * 180.27824 * 25 24 23 45 45 H 1.08001 * 120.00106 * 179.83248 * 26 25 24 46 46 H 1.08006 * 119.99485 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.00445 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 1 3.0910 3.4866 1.1823 7 6 4.6792 2.7394 2.4311 8 8 5.5285 1.5917 2.4910 9 7 4.6418 2.7367 -0.0142 10 6 5.0047 3.9382 -0.5053 11 8 4.6344 4.9545 0.0431 12 6 5.8706 4.0187 -1.7362 13 6 6.1341 5.4863 -2.0791 14 1 6.5623 5.9906 -1.2128 15 6 4.8378 6.1540 -2.4593 16 1 4.0758 5.5955 -2.9825 17 6 4.6244 7.4781 -2.1391 18 7 5.5948 8.1914 -1.6108 19 14 2.9571 8.2585 -2.4556 20 1 2.0954 8.0879 -1.2583 21 1 3.1334 9.7061 -2.7363 22 1 2.3171 7.6022 -3.6237 23 6 7.0983 5.5668 -3.2345 24 6 6.7421 5.0567 -4.4689 25 6 7.6248 5.1345 -5.5299 26 6 8.8673 5.7142 -5.3541 27 6 9.2256 6.2195 -4.1183 28 6 8.3413 6.1457 -3.0585 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.7401 0.5067 1.0919 35 1 2.4774 1.2355 2.1130 36 1 5.2898 3.6412 2.3878 37 1 4.0476 2.7706 3.3189 38 1 6.1151 1.5760 3.2596 39 1 4.9381 1.9238 -0.4528 40 1 6.8181 3.5141 -1.5474 41 1 5.3617 3.5360 -2.5706 42 1 5.4449 9.1230 -1.3859 43 1 5.7725 4.6008 -4.6053 44 1 7.3447 4.7399 -6.4954 45 1 9.5581 5.7725 -6.1822 46 1 10.1966 6.6721 -3.9809 47 1 8.6213 6.5401 -2.0929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456770880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:50 Heat of formation + Delta-G solvation = -80.495107 kcal Electronic energy + Delta-G solvation = -26613.856167 eV Core-core repulsion = 22953.445917 eV Total energy + Delta-G solvation = -3660.410250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83341 -39.80269 -38.35432 -36.69519 -35.79247 -34.97064 -33.42728 -32.07325 -31.48807 -30.21204 -28.96926 -27.35367 -24.84167 -24.34118 -23.14076 -22.09893 -21.37272 -20.83651 -20.58650 -18.51587 -18.41848 -17.81107 -17.16747 -17.02699 -16.44646 -16.31725 -15.91813 -15.66107 -15.40142 -15.24102 -15.15831 -14.55935 -14.31594 -14.22029 -13.95679 -13.86277 -13.57857 -13.47247 -13.25936 -13.16698 -12.86352 -12.60875 -12.47821 -12.43110 -12.31386 -11.81913 -11.78743 -11.68513 -11.61294 -11.29652 -10.96729 -10.93837 -10.58552 -10.29873 -10.23305 -9.78947 -9.53207 -9.17500 -8.03235 -6.05053 0.78922 0.85506 1.34918 1.39440 1.43807 1.44063 2.03752 2.44877 2.46618 3.19963 3.37471 3.43260 3.68456 4.02788 4.15082 4.21312 4.26804 4.35224 4.38230 4.42183 4.43550 4.48369 4.56727 4.59051 4.66626 4.71299 4.77641 4.83513 4.94221 4.97935 5.00972 5.07779 5.15838 5.27986 5.37573 5.39264 5.54385 5.65322 5.75426 5.77793 5.80449 5.84790 5.94366 5.96880 6.19075 6.43513 6.48079 6.85880 6.87874 7.02657 7.57437 7.67119 9.06694 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.003874 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.380283 B = 7225.833533 C = 7948.372027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.098 4.098 4 C -0.097 4.097 5 C 0.144 3.856 6 H 0.071 0.929 7 C 0.071 3.929 8 O -0.573 6.573 9 N -0.715 5.715 10 C 0.513 3.487 11 O -0.558 6.558 12 C -0.117 4.117 13 C 0.084 3.916 14 H 0.023 0.977 15 C -0.481 4.481 16 H 0.046 0.954 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.933 3.067 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.409 0.591 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -17.514 2.475 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.171 4.171 3 C -0.135 4.135 4 C -0.135 4.135 5 C 0.039 3.961 6 H 0.089 0.911 7 C -0.008 4.008 8 O -0.381 6.381 9 N -0.370 5.370 10 C 0.300 3.700 11 O -0.434 6.434 12 C -0.157 4.157 13 C 0.064 3.936 14 H 0.041 0.959 15 C -0.519 4.519 16 H 0.064 0.936 17 C -0.174 4.174 18 N -0.558 5.558 19 Si 0.760 3.240 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.163 4.163 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.242 0.758 39 H 0.245 0.755 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.133 0.867 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.220 -16.735 2.385 16.948 hybrid contribution -0.558 1.115 0.605 1.386 sum -1.778 -15.620 2.990 16.002 Atomic orbital electron populations 1.24003 0.96124 1.02259 1.01504 1.23027 0.96134 0.98363 0.99601 1.20782 0.98097 0.95570 0.99046 1.21565 0.97352 0.95520 0.99027 1.21053 0.91561 0.99467 0.84044 0.91105 1.22467 0.92887 0.87526 0.97900 1.86389 1.56122 1.43588 1.51958 1.45924 1.53401 1.07980 1.29667 1.20974 0.80355 0.82930 0.85740 1.90731 1.55260 1.36321 1.61116 1.21665 0.98822 0.99784 0.95396 1.17606 0.93080 0.90783 0.92082 0.95896 1.20954 1.00115 0.95374 1.35444 0.93568 1.25459 0.98476 0.98314 0.95175 1.70055 1.32810 1.07892 1.44994 0.85951 0.82171 0.77749 0.78116 1.21585 1.21318 1.18797 1.20579 0.93113 0.93829 0.97021 1.21036 0.99392 1.01381 0.92764 1.21370 0.94219 1.00004 0.98839 1.21259 0.97407 1.00596 0.97331 1.21283 0.99644 1.00339 0.93370 1.21100 0.94855 1.01326 0.98988 0.87127 0.89225 0.85980 0.92888 0.91264 0.89612 0.89728 0.96010 0.91132 0.75776 0.75530 0.89530 0.88756 0.93841 0.86693 0.84157 0.83866 0.85065 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.15 -2.70 9.52 25.65 0.24 -2.45 16 3 C -0.10 -2.04 5.54 29.85 0.17 -1.88 16 4 C -0.10 -1.93 4.45 30.59 0.14 -1.79 16 5 C 0.14 3.89 2.37 44.99 0.11 3.99 16 6 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 7 C 0.07 1.77 6.85 71.98 0.49 2.26 16 8 O -0.57 -11.94 12.83 -148.98 -1.91 -13.85 16 9 N -0.72 -21.30 4.48 -442.55 -1.98 -23.28 16 10 C 0.51 20.82 7.54 87.66 0.66 21.48 16 11 O -0.56 -28.93 14.65 -3.03 -0.04 -28.98 16 12 C -0.12 -4.59 4.95 29.85 0.15 -4.44 16 13 C 0.08 4.17 1.67 -12.29 -0.02 4.15 16 14 H 0.02 1.35 6.98 -2.38 -0.02 1.33 16 15 C -0.48 -26.68 6.37 25.60 0.16 -26.52 16 16 H 0.05 2.53 7.82 -2.91 -0.02 2.50 16 17 C 0.02 1.43 5.45 84.66 0.46 1.89 16 18 N -0.92 -56.99 12.87 21.45 0.28 -56.71 16 19 Si 0.93 47.21 29.54 68.60 2.03 49.24 16 20 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 C -0.04 -2.03 4.77 -19.86 -0.09 -2.13 16 24 C -0.13 -5.05 8.86 22.27 0.20 -4.85 16 25 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 26 C -0.15 -4.66 10.05 22.27 0.22 -4.44 16 27 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 28 C -0.14 -6.30 9.67 22.27 0.22 -6.08 16 29 H 0.11 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.09 1.61 7.84 -2.92 -0.02 1.59 16 31 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.05 1.25 7.79 -2.39 -0.02 1.23 16 33 H 0.07 1.55 7.75 -2.39 -0.02 1.53 16 34 H 0.09 1.59 7.73 -2.39 -0.02 1.57 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.39 4.96 9.12 -74.06 -0.68 4.28 16 39 H 0.41 9.80 8.60 -92.70 -0.80 9.00 16 40 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.09 3.33 7.78 -2.38 -0.02 3.31 16 42 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 43 H 0.12 4.38 7.76 -2.91 -0.02 4.36 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 47 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -74.88 394.02 2.37 -72.52 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.52 Total: 32.62 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 4.52 Total: -31.56 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.71 Total: -79.99 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.96 Total: -42.83 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -74.88 2.37 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456770880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.978 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds