Wall clock time and date at job start Tue Mar 31 2020 11:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00024 * 2 1 4 4 C 1.53001 * 109.46898 * 124.99843 * 3 2 1 5 5 C 1.53003 * 109.46698 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47397 * 304.99923 * 5 4 3 7 7 C 1.53001 * 109.46927 * 184.99984 * 5 4 3 8 8 O 1.42898 * 109.46999 * 305.00067 * 7 5 4 9 9 N 1.46499 * 109.47410 * 65.00288 * 5 4 3 10 10 C 1.34772 * 120.00099 * 205.00180 * 9 5 4 11 11 O 1.21285 * 120.00211 * 359.97438 * 10 9 5 12 12 C 1.50702 * 120.00285 * 179.97438 * 10 9 5 13 13 C 1.53002 * 109.47379 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46897 * 54.99804 * 13 12 10 15 15 C 1.50701 * 109.47001 * 295.00382 * 13 12 10 16 16 H 1.08004 * 119.99608 * 325.84392 * 15 13 12 17 17 C 1.37879 * 119.99989 * 145.85155 * 15 13 12 18 18 N 1.31512 * 119.99928 * 6.10934 * 17 15 13 19 19 Si 1.86795 * 119.99698 * 186.11684 * 17 15 13 20 20 H 1.48502 * 109.47455 * 59.99782 * 19 17 15 21 21 H 1.48503 * 109.46776 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47333 * 299.99395 * 19 17 15 23 23 C 1.50696 * 109.46834 * 175.00133 * 13 12 10 24 24 C 1.38233 * 120.00194 * 63.46896 * 23 13 12 25 25 C 1.38240 * 119.99955 * 179.78688 * 24 23 13 26 26 C 1.38230 * 119.99746 * 0.43400 * 25 24 23 27 27 C 1.38229 * 120.00410 * 359.81874 * 26 25 24 28 28 C 1.38234 * 119.99982 * 243.73266 * 23 13 12 29 29 H 1.07995 * 120.00395 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.00232 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99941 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46728 * 5.00137 * 3 2 1 33 33 H 1.08994 * 109.47066 * 245.00323 * 3 2 1 34 34 H 1.08990 * 109.46950 * 60.00301 * 4 3 2 35 35 H 1.09001 * 109.46983 * 299.99606 * 4 3 2 36 36 H 1.08999 * 109.47363 * 184.99838 * 7 5 4 37 37 H 1.08999 * 109.47178 * 64.99793 * 7 5 4 38 38 H 0.96708 * 113.99963 * 179.97438 * 8 7 5 39 39 H 0.96998 * 120.00175 * 24.99592 * 9 5 4 40 40 H 1.08997 * 109.47322 * 300.00028 * 12 10 9 41 41 H 1.09002 * 109.46692 * 59.99872 * 12 10 9 42 42 H 0.97002 * 120.00030 * 180.02562 * 18 17 15 43 43 H 1.07996 * 120.00070 * 359.97438 * 24 23 13 44 44 H 1.08003 * 119.99704 * 180.27378 * 25 24 23 45 45 H 1.08003 * 119.99824 * 179.83396 * 26 25 24 46 46 H 1.08003 * 120.00359 * 180.02562 * 27 26 25 47 47 H 1.08008 * 119.99613 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7995 2.6583 1.1820 6 1 4.2856 2.7977 0.2164 7 6 4.8575 2.6365 2.2870 8 8 4.2339 2.3380 3.5377 9 7 2.8654 3.7610 1.4222 10 6 3.1606 5.0015 0.9858 11 8 4.1999 5.2051 0.3946 12 6 2.1994 6.1357 1.2323 13 6 2.7705 7.4260 0.6407 14 1 2.9997 7.2719 -0.4137 15 6 4.0294 7.8027 1.3785 16 1 4.1188 7.5954 2.4347 17 6 5.0669 8.4120 0.7052 18 7 4.9139 8.7734 -0.5500 19 14 6.6898 8.7241 1.5759 20 1 7.2654 7.4320 2.0282 21 1 7.6343 9.3857 0.6401 22 1 6.4602 9.6022 2.7512 23 6 1.7573 8.5330 0.7781 24 6 1.3638 8.9580 2.0333 25 6 0.4376 9.9765 2.1593 26 6 -0.1017 10.5638 1.0301 27 6 0.2879 10.1353 -0.2250 28 6 1.2173 9.1198 -0.3510 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.7399 0.5066 1.0921 35 1 2.4771 1.2356 2.1130 36 1 5.3417 3.6112 2.3459 37 1 5.6028 1.8737 2.0615 38 1 4.8466 2.3073 4.2853 39 1 2.0343 3.5983 1.8952 40 1 1.2433 5.9109 0.7597 41 1 2.0537 6.2616 2.3052 42 1 5.6439 9.2017 -1.0239 43 1 1.7822 8.4964 2.9154 44 1 0.1335 10.3115 3.1400 45 1 -0.8272 11.3577 1.1286 46 1 -0.1332 10.5945 -1.1072 47 1 1.5219 8.7850 -1.3317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456770883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:57 Heat of formation + Delta-G solvation = -80.320126 kcal Electronic energy + Delta-G solvation = -26655.824526 eV Core-core repulsion = 22995.421864 eV Total energy + Delta-G solvation = -3660.402662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83488 -39.80468 -38.35405 -36.69375 -35.79159 -34.95360 -33.42969 -32.08707 -31.48944 -30.21582 -28.95414 -27.34735 -24.86095 -24.32472 -23.14171 -22.09545 -21.35909 -20.84233 -20.57326 -18.53311 -18.40536 -17.82457 -17.16332 -17.02506 -16.45994 -16.28377 -16.00586 -15.71720 -15.47104 -15.09158 -14.97301 -14.58066 -14.42337 -14.18281 -13.99023 -13.86890 -13.62705 -13.45451 -13.28194 -13.08337 -12.82260 -12.57316 -12.52574 -12.47989 -12.29643 -11.84905 -11.82063 -11.66666 -11.58972 -11.30029 -10.96508 -10.93511 -10.58698 -10.29646 -10.17472 -9.82291 -9.53384 -9.17761 -8.02995 -6.05094 0.78694 0.85364 1.35014 1.39215 1.43508 1.45704 2.03115 2.44973 2.46689 3.19729 3.37379 3.43124 3.69911 4.04707 4.12297 4.21205 4.26729 4.35914 4.37853 4.42583 4.44636 4.49276 4.56378 4.59968 4.66009 4.73635 4.78605 4.85319 4.93099 4.94075 5.00589 5.07790 5.19133 5.28778 5.37643 5.39222 5.54167 5.64804 5.75658 5.79772 5.80202 5.84579 5.95536 5.96713 6.18975 6.43434 6.47934 6.84600 6.86281 7.02125 7.57273 7.66524 9.06666 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.004162 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.029203 B = 6726.644845 C = 8401.713697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.096 4.096 4 C -0.098 4.098 5 C 0.145 3.855 6 H 0.075 0.925 7 C 0.069 3.931 8 O -0.573 6.573 9 N -0.716 5.716 10 C 0.513 3.487 11 O -0.557 6.557 12 C -0.117 4.117 13 C 0.084 3.916 14 H 0.024 0.976 15 C -0.483 4.483 16 H 0.044 0.956 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.934 3.066 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.268 1.268 23 C -0.044 4.044 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.408 0.592 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.253 0.747 43 H 0.114 0.886 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -13.677 5.911 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.040 3.960 6 H 0.093 0.907 7 C -0.010 4.010 8 O -0.381 6.381 9 N -0.370 5.370 10 C 0.300 3.700 11 O -0.433 6.433 12 C -0.157 4.157 13 C 0.065 3.935 14 H 0.042 0.958 15 C -0.521 4.521 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.761 3.239 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.193 1.193 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.090 0.910 38 H 0.241 0.759 39 H 0.243 0.757 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.150 0.850 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.089 -13.461 4.957 16.982 hybrid contribution 1.710 0.399 0.490 1.823 sum -7.379 -13.061 5.448 15.960 Atomic orbital electron populations 1.24014 0.96049 1.02381 1.01137 1.23012 0.96217 0.98319 0.99917 1.20776 0.98336 0.95850 0.98417 1.21572 0.98309 0.94637 0.99016 1.21068 0.90595 0.87488 0.96846 0.90652 1.22505 0.95026 0.98528 0.84971 1.86386 1.39951 1.93971 1.17771 1.45939 1.23952 1.07199 1.59928 1.20966 0.87270 0.84121 0.77643 1.90729 1.27273 1.83524 1.41816 1.21666 0.97300 0.93851 1.02874 1.17601 0.90857 0.88091 0.96950 0.95771 1.20908 0.99466 1.37345 0.94366 0.93797 1.25456 1.00905 0.95693 0.95318 1.70045 1.32505 1.42057 1.11064 0.85998 0.81390 0.77761 0.78751 1.20836 1.21463 1.19297 1.20572 0.92840 0.97977 0.93116 1.21030 0.98202 0.98608 0.96803 1.21367 0.97242 0.96338 0.99499 1.21257 1.01887 1.01387 0.92071 1.21284 0.97804 0.96955 0.98550 1.21102 0.98373 0.98850 0.97864 0.88848 0.87288 0.86262 0.92015 0.91757 0.89234 0.90272 0.96373 0.90995 0.75883 0.75658 0.89359 0.89064 0.93800 0.86829 0.84202 0.83860 0.85033 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 14.32 67.78 0.97 -2.21 16 2 C -0.16 -2.64 9.52 25.65 0.24 -2.39 16 3 C -0.10 -1.91 5.54 29.85 0.17 -1.75 16 4 C -0.10 -1.91 4.45 30.60 0.14 -1.78 16 5 C 0.15 3.92 2.37 44.99 0.11 4.03 16 6 H 0.08 2.38 7.58 -2.39 -0.02 2.36 16 7 C 0.07 1.80 6.85 71.98 0.49 2.29 16 8 O -0.57 -12.90 12.82 -148.98 -1.91 -14.81 16 9 N -0.72 -21.57 4.48 -442.53 -1.98 -23.55 16 10 C 0.51 20.93 7.54 87.66 0.66 21.59 16 11 O -0.56 -28.92 14.65 -3.04 -0.04 -28.96 16 12 C -0.12 -4.63 4.95 29.85 0.15 -4.49 16 13 C 0.08 4.21 1.67 -12.29 -0.02 4.19 16 14 H 0.02 1.42 6.98 -2.39 -0.02 1.40 16 15 C -0.48 -26.89 6.37 25.60 0.16 -26.72 16 16 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 17 C 0.02 1.46 5.45 84.66 0.46 1.92 16 18 N -0.92 -56.85 12.87 21.45 0.28 -56.58 16 19 Si 0.93 47.05 29.54 68.60 2.03 49.08 16 20 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 23 C -0.04 -2.02 4.77 -19.87 -0.09 -2.11 16 24 C -0.13 -5.11 8.86 22.27 0.20 -4.91 16 25 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 26 C -0.15 -4.68 10.05 22.27 0.22 -4.46 16 27 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 28 C -0.14 -6.25 9.67 22.27 0.22 -6.03 16 29 H 0.09 1.54 7.84 -2.91 -0.02 1.51 16 30 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.06 1.32 7.40 -2.38 -0.02 1.31 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.56 7.73 -2.39 -0.02 1.54 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.39 5.72 9.12 -74.05 -0.68 5.04 16 39 H 0.41 10.07 8.60 -92.71 -0.80 9.27 16 40 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.09 3.31 7.77 -2.39 -0.02 3.29 16 42 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.11 4.39 7.76 -2.91 -0.02 4.36 16 44 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 46 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 47 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -74.63 394.02 2.37 -72.26 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.52 Total: 33.69 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 4.52 Total: -31.13 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.70 Total: -80.13 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.96 Total: -43.77 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -74.63 2.37 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456770883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.055 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds