Wall clock time and date at job start Tue Mar 31 2020 12:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47388 * 2 1 4 4 C 1.50699 * 109.47360 * 239.99565 * 2 1 3 5 5 H 1.08006 * 120.00181 * 240.00115 * 4 2 1 6 6 C 1.37873 * 119.99910 * 60.00719 * 4 2 1 7 7 N 1.31513 * 120.00092 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00332 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47020 * 89.99480 * 8 6 4 10 10 H 1.48493 * 109.47028 * 209.99602 * 8 6 4 11 11 H 1.48505 * 109.46725 * 329.99713 * 8 6 4 12 12 C 1.53006 * 109.46916 * 119.99639 * 2 1 3 13 13 N 1.46500 * 109.47196 * 300.00388 * 12 2 1 14 14 C 1.34772 * 119.99794 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00193 * 5.13655 * 14 13 12 16 16 C 1.50700 * 119.99823 * 185.12909 * 14 13 12 17 17 H 1.08994 * 109.24775 * 24.09726 * 16 14 13 18 18 C 1.52731 * 109.25049 * 143.56490 * 16 14 13 19 19 C 1.53336 * 108.37789 * 171.28805 * 18 16 14 20 20 C 1.52741 * 108.35971 * 290.10273 * 19 18 16 21 21 C 1.50624 * 110.58132 * 51.08069 * 20 19 18 22 22 C 1.39403 * 117.74921 * 162.46692 * 21 20 19 23 23 O 1.35899 * 119.78725 * 359.76084 * 22 21 20 24 24 C 1.38431 * 120.42423 * 179.74759 * 22 21 20 25 25 C 1.38175 * 119.70907 * 359.97438 * 24 22 21 26 26 C 1.37950 * 119.83454 * 0.12065 * 25 24 22 27 27 C 1.37568 * 122.59546 * 342.41169 * 21 20 19 28 28 H 1.08999 * 109.47498 * 300.00388 * 1 2 3 29 29 H 1.09001 * 109.46856 * 60.00586 * 1 2 3 30 30 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47244 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46719 * 300.00075 * 3 2 1 33 33 H 1.09005 * 109.46936 * 59.99777 * 3 2 1 34 34 H 0.97004 * 120.00372 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47277 * 179.97438 * 12 2 1 36 36 H 1.09009 * 109.46800 * 60.00335 * 12 2 1 37 37 H 0.96997 * 119.99786 * 359.97438 * 13 12 2 38 38 H 1.09000 * 109.68199 * 51.56912 * 18 16 14 39 39 H 1.08994 * 109.68326 * 291.00665 * 18 16 14 40 40 H 1.09003 * 109.68523 * 170.39119 * 19 18 16 41 41 H 1.08993 * 109.71900 * 49.83880 * 19 18 16 42 42 H 1.08997 * 109.25034 * 171.36237 * 20 19 18 43 43 H 1.08998 * 109.25409 * 290.79432 * 20 19 18 44 44 H 0.96696 * 113.99362 * 90.00201 * 23 22 21 45 45 H 1.08005 * 120.14662 * 179.97438 * 24 22 21 46 46 H 1.08003 * 120.07872 * 180.14348 * 25 24 22 47 47 H 1.08005 * 119.67104 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4868 -0.1415 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 6 2.0399 -0.7212 1.2494 13 7 1.5515 -0.0306 2.4455 14 6 1.8767 -0.4913 3.6695 15 8 2.6482 -1.4203 3.7827 16 6 1.2817 0.1479 4.8977 17 1 0.3420 0.6318 4.6316 18 6 1.0140 -0.9295 5.9466 19 6 0.6180 -0.2400 7.2577 20 6 1.8513 0.4605 7.8245 21 6 2.4968 1.3274 6.7753 22 6 3.3887 2.3094 7.2036 23 8 3.6428 2.4585 8.5303 24 6 4.0173 3.1337 6.2861 25 6 3.7584 2.9802 4.9376 26 6 2.8742 2.0095 4.5146 27 6 2.2386 1.1814 5.4320 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7085 1.1608 -3.4845 35 1 3.1299 -0.7216 1.2492 36 1 1.6766 -1.7490 1.2493 37 1 0.9942 0.7582 2.3564 38 1 1.9150 -1.5230 6.1016 39 1 0.2019 -1.5746 5.6114 40 1 0.2585 -0.9832 7.9694 41 1 -0.1651 0.4934 7.0657 42 1 1.5553 1.0805 8.6707 43 1 2.5672 -0.2890 8.1618 44 1 4.3820 1.9243 8.8514 45 1 4.7072 3.8934 6.6229 46 1 4.2473 3.6185 4.2164 47 1 2.6741 1.8915 3.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:09 Heat of formation + Delta-G solvation = -78.038934 kcal Electronic energy + Delta-G solvation = -27214.979381 eV Core-core repulsion = 23554.675639 eV Total energy + Delta-G solvation = -3660.303742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84583 -39.20003 -37.25646 -36.36828 -35.74524 -33.34852 -32.00363 -30.71318 -30.40678 -28.58923 -25.88472 -25.75587 -25.18363 -23.86536 -22.94795 -22.31251 -20.30025 -19.53647 -18.83066 -18.16795 -16.97681 -16.28797 -16.09373 -15.80254 -15.63477 -15.12291 -14.78907 -14.63628 -14.04675 -13.98175 -13.73614 -13.43534 -12.96387 -12.93320 -12.81432 -12.51382 -12.33987 -12.20848 -11.96686 -11.59366 -11.40446 -11.34849 -11.21573 -11.03525 -10.88258 -10.82145 -10.71021 -10.41454 -10.24905 -10.22391 -9.66197 -9.61585 -9.27721 -8.82067 -8.66056 -8.60022 -8.47629 -8.33569 -6.04072 -4.14223 1.12883 1.20631 2.97273 3.26896 3.34046 3.37128 3.41443 3.77614 4.07433 4.38479 4.45680 4.53617 4.79951 4.84490 4.95656 5.03102 5.19575 5.22782 5.27247 5.30157 5.38500 5.46910 5.70451 5.71869 5.77328 5.84267 5.87171 6.05816 6.20609 6.25308 6.29098 6.31150 6.39083 6.47750 6.48328 6.69736 6.75544 6.79531 6.90519 6.98824 7.00179 7.32720 7.47813 7.53107 7.67398 7.98588 8.01322 8.12989 8.36306 8.65781 8.86520 9.51800 10.97255 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.003127 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.464439 B = 8951.532161 C = 9595.162361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.514 3.486 15 O -0.545 6.545 16 C -0.068 4.068 17 H 0.100 0.900 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.093 4.093 22 C 0.097 3.903 23 O -0.497 6.497 24 C -0.145 4.145 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.048 4.048 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.387 0.613 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 3.687 19.425 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.368 5.368 14 C 0.299 3.701 15 O -0.423 6.423 16 C -0.089 4.089 17 H 0.117 0.883 18 C -0.143 4.143 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.093 4.093 22 C 0.053 3.947 23 O -0.307 6.307 24 C -0.163 4.163 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.049 4.049 28 H 0.025 0.975 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.242 0.758 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.798 3.508 19.300 19.632 hybrid contribution 0.519 -0.265 -1.028 1.182 sum 1.317 3.243 18.272 18.604 Atomic orbital electron populations 1.21834 0.97764 0.99179 1.00098 1.18350 0.92775 0.92743 0.90555 1.21831 0.98571 0.98344 1.00063 1.20984 1.31511 1.12102 0.89901 0.92463 1.24874 0.94858 0.94897 0.98841 1.69799 1.36656 1.22732 1.23236 0.86578 0.79336 0.79403 0.82607 1.20713 1.21262 1.19901 1.21735 0.98261 0.95716 0.83445 1.46450 1.52734 1.31565 1.06023 1.20266 0.81698 0.83680 0.84481 1.90659 1.35214 1.29656 1.86728 1.20247 0.98301 0.95720 0.94645 0.88251 1.21461 1.02985 0.96477 0.93395 1.21561 0.97365 0.99682 0.96916 1.20355 0.97042 0.97623 0.96308 1.19824 0.99008 0.96720 0.93762 1.18374 0.97490 0.95761 0.83090 1.84787 1.55760 1.69480 1.20695 1.21334 1.01059 1.00767 0.93154 1.20951 0.97849 0.98079 0.95228 1.21418 0.97024 0.95494 1.00169 1.19070 0.97639 0.95986 0.92164 0.97506 0.89582 0.95443 0.95433 0.89571 0.97573 0.92997 0.92672 0.92766 0.76687 0.89994 0.90960 0.90959 0.91457 0.90203 0.90741 0.75782 0.85504 0.85341 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.34 9.35 55.43 0.52 -22.82 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.73 4.51 -4.04 -0.02 2.71 16 13 N -0.72 -12.39 4.16 -60.29 -0.25 -12.64 16 14 C 0.51 8.73 5.72 -10.99 -0.06 8.66 16 15 O -0.54 -11.26 16.12 5.55 0.09 -11.17 16 16 C -0.07 -0.90 2.57 -93.09 -0.24 -1.13 16 17 H 0.10 1.14 8.12 -51.93 -0.42 0.72 16 18 C -0.11 -1.24 5.07 -26.70 -0.14 -1.37 16 19 C -0.12 -1.10 5.98 -26.69 -0.16 -1.26 16 20 C -0.08 -0.75 5.28 -28.05 -0.15 -0.90 16 21 C -0.09 -1.12 5.75 -104.47 -0.60 -1.72 16 22 C 0.10 1.11 6.66 -39.08 -0.26 0.85 16 23 O -0.50 -4.74 12.53 -19.42 -0.24 -4.98 16 24 C -0.14 -1.63 9.98 -39.53 -0.39 -2.02 16 25 C -0.10 -1.24 10.04 -39.71 -0.40 -1.64 16 26 C -0.12 -1.67 9.04 -39.42 -0.36 -2.03 16 27 C -0.05 -0.64 5.42 -104.62 -0.57 -1.21 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.19 8.14 -51.92 -0.42 0.76 16 37 H 0.40 6.22 6.03 -40.82 -0.25 5.98 16 38 H 0.08 1.10 7.51 -51.93 -0.39 0.71 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.08 0.73 7.76 -51.93 -0.40 0.33 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.39 1.99 9.06 45.56 0.41 2.40 16 45 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 46 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 47 H 0.13 1.84 6.53 -52.48 -0.34 1.50 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -29.79 366.98 -9.06 -38.85 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.50 Total: 8.43 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -3.19 Total: -16.76 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.27 Total: -35.46 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.15 Total: -16.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.79 -9.06 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.187 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds