Wall clock time and date at job start Tue Mar 31 2020 12:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47388 * 2 1 4 4 C 1.50699 * 109.47360 * 239.99565 * 2 1 3 5 5 H 1.08006 * 120.00181 * 240.00115 * 4 2 1 6 6 C 1.37873 * 119.99910 * 60.00719 * 4 2 1 7 7 N 1.31513 * 120.00092 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00332 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47020 * 89.99480 * 8 6 4 10 10 H 1.48493 * 109.47028 * 209.99602 * 8 6 4 11 11 H 1.48505 * 109.46725 * 329.99713 * 8 6 4 12 12 C 1.53006 * 109.46916 * 119.99639 * 2 1 3 13 13 N 1.46500 * 109.47196 * 300.00388 * 12 2 1 14 14 C 1.34772 * 119.99794 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00193 * 5.13655 * 14 13 12 16 16 C 1.50700 * 119.99823 * 185.12909 * 14 13 12 17 17 H 1.08994 * 109.24775 * 24.09726 * 16 14 13 18 18 C 1.52731 * 109.25049 * 143.56490 * 16 14 13 19 19 C 1.53336 * 108.37789 * 171.28805 * 18 16 14 20 20 C 1.52741 * 108.35971 * 290.10273 * 19 18 16 21 21 C 1.50624 * 110.58132 * 51.08069 * 20 19 18 22 22 C 1.39403 * 117.74921 * 162.46692 * 21 20 19 23 23 O 1.35899 * 119.78725 * 359.76084 * 22 21 20 24 24 C 1.38431 * 120.42423 * 179.74759 * 22 21 20 25 25 C 1.38175 * 119.70907 * 359.97438 * 24 22 21 26 26 C 1.37950 * 119.83454 * 0.12065 * 25 24 22 27 27 C 1.37568 * 122.59546 * 342.41169 * 21 20 19 28 28 H 1.08999 * 109.47498 * 300.00388 * 1 2 3 29 29 H 1.09001 * 109.46856 * 60.00586 * 1 2 3 30 30 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47244 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46719 * 300.00075 * 3 2 1 33 33 H 1.09005 * 109.46936 * 59.99777 * 3 2 1 34 34 H 0.97004 * 120.00372 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47277 * 179.97438 * 12 2 1 36 36 H 1.09009 * 109.46800 * 60.00335 * 12 2 1 37 37 H 0.96997 * 119.99786 * 359.97438 * 13 12 2 38 38 H 1.09000 * 109.68199 * 51.56912 * 18 16 14 39 39 H 1.08994 * 109.68326 * 291.00665 * 18 16 14 40 40 H 1.09003 * 109.68523 * 170.39119 * 19 18 16 41 41 H 1.08993 * 109.71900 * 49.83880 * 19 18 16 42 42 H 1.08997 * 109.25034 * 171.36237 * 20 19 18 43 43 H 1.08998 * 109.25409 * 290.79432 * 20 19 18 44 44 H 0.96696 * 113.99362 * 90.00201 * 23 22 21 45 45 H 1.08005 * 120.14662 * 179.97438 * 24 22 21 46 46 H 1.08003 * 120.07872 * 180.14348 * 25 24 22 47 47 H 1.08005 * 119.67104 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4868 -0.1415 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 6 2.0399 -0.7212 1.2494 13 7 1.5515 -0.0306 2.4455 14 6 1.8767 -0.4913 3.6695 15 8 2.6482 -1.4203 3.7827 16 6 1.2817 0.1479 4.8977 17 1 0.3420 0.6318 4.6316 18 6 1.0140 -0.9295 5.9466 19 6 0.6180 -0.2400 7.2577 20 6 1.8513 0.4605 7.8245 21 6 2.4968 1.3274 6.7753 22 6 3.3887 2.3094 7.2036 23 8 3.6428 2.4585 8.5303 24 6 4.0173 3.1337 6.2861 25 6 3.7584 2.9802 4.9376 26 6 2.8742 2.0095 4.5146 27 6 2.2386 1.1814 5.4320 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7085 1.1608 -3.4845 35 1 3.1299 -0.7216 1.2492 36 1 1.6766 -1.7490 1.2493 37 1 0.9942 0.7582 2.3564 38 1 1.9150 -1.5230 6.1016 39 1 0.2019 -1.5746 5.6114 40 1 0.2585 -0.9832 7.9694 41 1 -0.1651 0.4934 7.0657 42 1 1.5553 1.0805 8.6707 43 1 2.5672 -0.2890 8.1618 44 1 4.3820 1.9243 8.8514 45 1 4.7072 3.8934 6.6229 46 1 4.2473 3.6185 4.2164 47 1 2.6741 1.8915 3.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:08 Heat of formation + Delta-G solvation = -95.380809 kcal Electronic energy + Delta-G solvation = -27215.731381 eV Core-core repulsion = 23554.675639 eV Total energy + Delta-G solvation = -3661.055742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87489 -40.42093 -38.42287 -37.78259 -36.66128 -35.03012 -33.22856 -32.30214 -31.28979 -29.49632 -27.57387 -27.55140 -26.96474 -24.97888 -23.81639 -23.30403 -21.59361 -20.64919 -20.37943 -19.14114 -18.32324 -17.64755 -17.20751 -17.04214 -16.75326 -16.48610 -16.35501 -15.97898 -15.15326 -14.97903 -14.89850 -14.69182 -14.58120 -14.29714 -14.02008 -13.75645 -13.52854 -13.26445 -13.19506 -13.10641 -12.85393 -12.67299 -12.60336 -12.49602 -12.26921 -12.20609 -12.14150 -11.82671 -11.70636 -11.49080 -11.28821 -11.08028 -10.82909 -10.67986 -10.40342 -9.95982 -9.61062 -9.48587 -8.02897 -6.18684 0.22369 0.30549 1.41698 1.44803 1.52777 1.62447 2.24665 2.47072 2.66494 3.20724 3.27796 3.52376 3.65512 3.84698 3.93220 4.06534 4.14337 4.24381 4.35612 4.41886 4.45368 4.50132 4.51029 4.62974 4.70952 4.88037 4.91772 4.96878 4.98730 4.99574 5.05114 5.09919 5.11976 5.18630 5.24559 5.34914 5.41060 5.42183 5.50210 5.55921 5.58027 5.66597 5.66829 5.86087 6.14666 6.21129 6.42912 6.63132 6.84938 6.85436 7.27459 7.49149 8.95846 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.003127 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.464439 B = 8951.532161 C = 9595.162361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.709 5.709 14 C 0.516 3.484 15 O -0.585 6.585 16 C -0.060 4.060 17 H 0.120 0.880 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.075 4.075 21 C -0.101 4.101 22 C 0.099 3.901 23 O -0.500 6.500 24 C -0.148 4.148 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.063 4.063 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.407 0.593 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 4.450 21.472 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.081 4.081 17 H 0.138 0.862 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.111 4.111 21 C -0.102 4.102 22 C 0.055 3.945 23 O -0.313 6.313 24 C -0.166 4.166 25 C -0.128 4.128 26 C -0.164 4.164 27 C -0.064 4.064 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.245 0.755 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.266 0.734 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.329 4.286 21.365 21.793 hybrid contribution 0.725 -0.489 -1.597 1.820 sum 1.054 3.797 19.768 20.157 Atomic orbital electron populations 1.21674 0.97055 0.98729 1.00423 1.18340 0.93266 0.92975 0.90220 1.21661 0.97860 0.97855 1.00342 1.21275 1.31749 1.12165 0.91632 0.93838 1.25433 0.95144 0.95565 1.00905 1.69903 1.36950 1.23237 1.23595 0.85781 0.78651 0.78523 0.79982 1.20471 1.20819 1.20151 1.21274 0.96939 0.95076 0.84312 1.46276 1.52804 1.31666 1.05324 1.20963 0.80710 0.82865 0.85157 1.90638 1.37012 1.31546 1.87298 1.20261 0.98848 0.96126 0.92842 0.86199 1.21475 1.02292 0.96080 0.94404 1.21550 0.97338 1.00113 0.95754 1.20408 0.97262 0.97602 0.95877 1.20096 0.99166 0.97226 0.93722 1.18466 0.96959 0.95229 0.83890 1.84734 1.56925 1.70074 1.19517 1.21591 1.01156 1.01080 0.92765 1.21151 0.97558 0.97904 0.96150 1.21450 0.98456 0.96796 0.99706 1.19121 0.98212 0.96140 0.92878 0.94416 0.91894 0.96220 0.96375 0.91888 0.94546 0.93023 0.94607 0.94253 0.75490 0.92026 0.90420 0.88830 0.90688 0.89140 0.90050 0.73376 0.83493 0.84093 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -27.97 8.01 25.60 0.21 -27.76 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 8 Si 0.94 42.53 29.54 68.60 2.03 44.56 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.27 4.51 86.38 0.39 6.66 16 13 N -0.71 -24.30 4.16 -463.04 -1.92 -26.22 16 14 C 0.52 17.44 5.72 87.66 0.50 17.95 16 15 O -0.58 -24.59 16.12 -3.05 -0.05 -24.64 16 16 C -0.06 -1.50 2.57 -12.39 -0.03 -1.54 16 17 H 0.12 2.48 8.12 -2.39 -0.02 2.46 16 18 C -0.10 -2.30 5.07 30.62 0.16 -2.14 16 19 C -0.11 -1.74 5.98 30.62 0.18 -1.56 16 20 C -0.07 -1.26 5.28 29.74 0.16 -1.10 16 21 C -0.10 -2.25 5.75 -19.77 -0.11 -2.36 16 22 C 0.10 2.05 6.66 22.60 0.15 2.20 16 23 O -0.50 -8.04 12.53 -92.41 -1.16 -9.20 16 24 C -0.15 -3.02 9.98 22.30 0.22 -2.80 16 25 C -0.11 -2.52 10.04 22.19 0.22 -2.30 16 26 C -0.15 -3.88 9.04 22.38 0.20 -3.68 16 27 C -0.06 -1.60 5.42 -19.87 -0.11 -1.71 16 28 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 29 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 33 H 0.04 1.33 6.86 -2.38 -0.02 1.32 16 34 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.41 12.25 6.03 -92.71 -0.56 11.69 16 38 H 0.06 1.61 7.51 -2.39 -0.02 1.60 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.09 1.36 7.76 -2.39 -0.02 1.34 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.41 2.94 9.06 -74.06 -0.67 2.26 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.12 3.29 6.53 -2.91 -0.02 3.27 16 Total: -1.00 -64.61 366.98 2.56 -62.05 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.24 Total: 26.06 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.71 Total: -25.17 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.72 Total: -73.66 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.21 Total: -33.84 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.61 2.56 -62.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.331 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds