Wall clock time and date at job start Tue Mar 31 2020 12:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 C 1.50703 * 109.46371 * 240.00062 * 2 1 3 5 5 H 1.08005 * 119.99838 * 239.99642 * 4 2 1 6 6 C 1.37873 * 119.99840 * 60.00892 * 4 2 1 7 7 N 1.31513 * 120.00615 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99767 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47353 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47280 * 119.99650 * 8 6 4 11 11 H 1.48497 * 109.47031 * 239.99216 * 8 6 4 12 12 C 1.53000 * 109.47033 * 120.00517 * 2 1 3 13 13 N 1.46499 * 109.47090 * 299.99660 * 12 2 1 14 14 C 1.34776 * 119.99895 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99847 * 5.07126 * 14 13 12 16 16 C 1.50695 * 119.99798 * 185.08206 * 14 13 12 17 17 H 1.08996 * 109.21818 * 336.60467 * 16 14 13 18 18 C 1.52736 * 109.25208 * 217.15519 * 16 14 13 19 19 C 1.53319 * 108.39386 * 188.54924 * 18 16 14 20 20 C 1.52721 * 108.39427 * 69.78446 * 19 18 16 21 21 C 1.50618 * 110.60267 * 308.89924 * 20 19 18 22 22 C 1.39395 * 117.76812 * 197.63671 * 21 20 19 23 23 O 1.35908 * 119.78506 * 0.60717 * 22 21 20 24 24 C 1.38436 * 120.42977 * 180.60869 * 22 21 20 25 25 C 1.38172 * 119.70632 * 359.97438 * 24 22 21 26 26 C 1.37959 * 119.83342 * 359.87657 * 25 24 22 27 27 C 1.37574 * 122.58375 * 17.99006 * 21 20 19 28 28 H 1.09007 * 109.46782 * 299.99880 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99323 * 1 2 3 30 30 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46518 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47206 * 300.00111 * 3 2 1 33 33 H 1.09000 * 109.46801 * 60.00454 * 3 2 1 34 34 H 0.96992 * 120.00700 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46889 * 179.97438 * 12 2 1 36 36 H 1.09005 * 109.47382 * 59.99620 * 12 2 1 37 37 H 0.97000 * 119.99863 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.68119 * 68.81725 * 18 16 14 39 39 H 1.09001 * 109.67650 * 308.27189 * 18 16 14 40 40 H 1.09008 * 109.67737 * 310.05993 * 19 18 16 41 41 H 1.09002 * 109.68273 * 189.51679 * 19 18 16 42 42 H 1.09008 * 109.25368 * 188.61137 * 20 19 18 43 43 H 1.09004 * 109.22504 * 69.17116 * 20 19 18 44 44 H 0.96701 * 113.99971 * 270.00000 * 23 22 21 45 45 H 1.08000 * 120.14349 * 180.02562 * 24 22 21 46 46 H 1.08001 * 120.08233 * 179.85019 * 25 24 22 47 47 H 1.08003 * 119.66342 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 3.1479 -2.2857 -3.6040 10 1 1.1674 -1.5864 -4.8166 11 1 3.1469 -0.1857 -4.8162 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6694 15 8 2.6490 -1.4203 3.7823 16 6 1.2838 0.1487 4.8978 17 1 0.9769 1.1670 4.6592 18 6 2.3355 0.1859 6.0048 19 6 1.6560 0.6384 7.3026 20 6 0.7283 -0.4787 7.7757 21 6 -0.1807 -0.9212 6.6592 22 6 -1.3216 -1.6463 6.9993 23 8 -1.5844 -1.9182 8.3047 24 6 -2.1886 -2.0913 6.0161 25 6 -1.9200 -1.8135 4.6895 26 6 -0.7923 -1.0932 4.3538 27 6 0.0798 -0.6429 5.3373 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 0.7082 1.1612 -3.4843 35 1 3.1301 -0.7218 1.2489 36 1 1.6766 -1.7491 1.2492 37 1 0.9938 0.7577 2.3564 38 1 3.1240 0.8897 5.7385 39 1 2.7608 -0.8085 6.1405 40 1 1.0767 1.5430 7.1175 41 1 2.4115 0.8350 8.0633 42 1 0.1249 -0.1164 8.6081 43 1 1.3276 -1.3262 8.1085 44 1 -1.2016 -2.7491 8.6182 45 1 -3.0714 -2.6523 6.2849 46 1 -2.5910 -2.1597 3.9173 47 1 -0.5849 -0.8779 3.3160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:13 Heat of formation + Delta-G solvation = -78.177384 kcal Electronic energy + Delta-G solvation = -27238.007090 eV Core-core repulsion = 23577.697344 eV Total energy + Delta-G solvation = -3660.309746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83696 -39.19710 -37.25093 -36.36556 -35.74074 -33.34575 -31.99570 -30.71445 -30.40374 -28.58234 -25.88208 -25.75667 -25.18524 -23.85611 -22.94246 -22.31666 -20.27810 -19.54361 -18.83504 -18.15957 -16.97291 -16.26721 -16.08972 -15.80431 -15.62471 -15.12905 -14.80045 -14.61631 -14.02811 -13.97892 -13.71598 -13.45971 -12.96669 -12.93146 -12.80687 -12.50378 -12.34938 -12.21153 -11.94974 -11.59146 -11.39449 -11.35174 -11.22311 -11.03142 -10.90016 -10.81763 -10.67998 -10.41946 -10.24363 -10.22540 -9.66356 -9.61282 -9.27709 -8.81166 -8.65403 -8.58625 -8.47989 -8.33864 -6.04291 -4.14369 1.14269 1.21611 2.97166 3.25608 3.34395 3.38317 3.42972 3.77581 4.08105 4.38434 4.46035 4.54309 4.80251 4.84489 4.96477 5.04699 5.21265 5.22650 5.28346 5.29836 5.38171 5.47603 5.71392 5.72132 5.77611 5.84502 5.87375 6.06461 6.20463 6.25129 6.29341 6.31991 6.40551 6.48097 6.49301 6.70893 6.75649 6.79499 6.90359 6.98735 7.00145 7.32651 7.48622 7.53053 7.67476 7.98459 8.01473 8.13002 8.36194 8.65926 8.86659 9.51741 10.97086 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003171 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.987302 B = 8829.026780 C = 9492.494247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.514 3.486 15 O -0.545 6.545 16 C -0.067 4.067 17 H 0.099 0.901 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.093 4.093 22 C 0.097 3.903 23 O -0.497 6.497 24 C -0.144 4.144 25 C -0.103 4.103 26 C -0.122 4.122 27 C -0.047 4.047 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.387 0.613 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -0.572 19.209 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.298 3.702 15 O -0.423 6.423 16 C -0.089 4.089 17 H 0.117 0.883 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.093 4.093 22 C 0.052 3.948 23 O -0.307 6.307 24 C -0.163 4.163 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.048 4.048 28 H 0.025 0.975 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.242 0.758 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.079 -0.610 19.088 19.529 hybrid contribution 0.144 -0.568 -1.046 1.199 sum -3.935 -1.179 18.042 18.504 Atomic orbital electron populations 1.21834 0.97761 0.99128 1.00108 1.18356 0.92777 0.92757 0.90570 1.21830 0.98598 0.98342 1.00084 1.21024 1.31416 1.12081 0.89886 0.92413 1.24875 0.94856 0.94914 0.98853 1.69805 1.36701 1.22773 1.23135 0.86527 0.78654 0.79766 0.83011 1.19763 1.21057 1.21064 1.21732 0.98321 0.95651 0.83444 1.46446 1.52587 1.31715 1.06016 1.20267 0.81486 0.83897 0.84507 1.90658 1.35425 1.29440 1.86737 1.20220 0.94290 0.99512 0.94838 0.88343 1.21466 0.96470 1.03459 0.92977 1.21556 0.98568 0.98149 0.97246 1.20351 0.96403 0.98757 0.95817 1.19816 0.95305 1.00147 0.94066 1.18369 0.93849 0.99153 0.83393 1.84791 1.77759 1.45008 1.23166 1.21334 1.00401 1.01781 0.92777 1.20958 0.97266 0.98139 0.95771 1.21438 0.94466 0.98170 0.99938 1.19041 0.95058 0.98540 0.92164 0.97529 0.89570 0.95453 0.95443 0.89581 0.97514 0.93055 0.92658 0.92798 0.76668 0.90978 0.90004 0.91466 0.90969 0.90207 0.90749 0.75803 0.85517 0.85347 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.31 9.35 55.43 0.52 -22.79 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.72 4.51 -4.04 -0.02 2.70 16 13 N -0.72 -12.35 4.16 -60.29 -0.25 -12.60 16 14 C 0.51 8.70 5.69 -10.99 -0.06 8.64 16 15 O -0.54 -11.25 16.14 5.56 0.09 -11.16 16 16 C -0.07 -0.89 2.59 -93.09 -0.24 -1.13 16 17 H 0.10 1.12 8.06 -51.93 -0.42 0.70 16 18 C -0.11 -1.24 5.08 -26.70 -0.14 -1.38 16 19 C -0.12 -1.09 5.98 -26.71 -0.16 -1.25 16 20 C -0.08 -0.75 5.28 -28.07 -0.15 -0.90 16 21 C -0.09 -1.13 5.75 -104.47 -0.60 -1.73 16 22 C 0.10 1.12 6.66 -39.08 -0.26 0.86 16 23 O -0.50 -4.78 12.53 -19.45 -0.24 -5.02 16 24 C -0.14 -1.64 9.98 -39.53 -0.39 -2.04 16 25 C -0.10 -1.26 10.04 -39.71 -0.40 -1.66 16 26 C -0.12 -1.69 9.04 -39.42 -0.36 -2.04 16 27 C -0.05 -0.64 5.42 -104.63 -0.57 -1.20 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 6.20 6.10 -40.82 -0.25 5.95 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.10 7.52 -51.93 -0.39 0.71 16 40 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.74 7.75 -51.92 -0.40 0.33 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.39 2.01 9.06 45.56 0.41 2.42 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.13 1.90 6.63 -52.48 -0.35 1.56 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -29.78 367.12 -9.07 -38.85 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.51 Total: 8.45 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.19 Total: -16.81 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.27 Total: -35.39 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.15 Total: -16.18 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.78 -9.07 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.329 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds