Wall clock time and date at job start Tue Mar 31 2020 12:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 C 1.50703 * 109.46371 * 240.00062 * 2 1 3 5 5 H 1.08005 * 119.99838 * 239.99642 * 4 2 1 6 6 C 1.37873 * 119.99840 * 60.00892 * 4 2 1 7 7 N 1.31513 * 120.00615 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99767 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47353 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47280 * 119.99650 * 8 6 4 11 11 H 1.48497 * 109.47031 * 239.99216 * 8 6 4 12 12 C 1.53000 * 109.47033 * 120.00517 * 2 1 3 13 13 N 1.46499 * 109.47090 * 299.99660 * 12 2 1 14 14 C 1.34776 * 119.99895 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99847 * 5.07126 * 14 13 12 16 16 C 1.50695 * 119.99798 * 185.08206 * 14 13 12 17 17 H 1.08996 * 109.21818 * 336.60467 * 16 14 13 18 18 C 1.52736 * 109.25208 * 217.15519 * 16 14 13 19 19 C 1.53319 * 108.39386 * 188.54924 * 18 16 14 20 20 C 1.52721 * 108.39427 * 69.78446 * 19 18 16 21 21 C 1.50618 * 110.60267 * 308.89924 * 20 19 18 22 22 C 1.39395 * 117.76812 * 197.63671 * 21 20 19 23 23 O 1.35908 * 119.78506 * 0.60717 * 22 21 20 24 24 C 1.38436 * 120.42977 * 180.60869 * 22 21 20 25 25 C 1.38172 * 119.70632 * 359.97438 * 24 22 21 26 26 C 1.37959 * 119.83342 * 359.87657 * 25 24 22 27 27 C 1.37574 * 122.58375 * 17.99006 * 21 20 19 28 28 H 1.09007 * 109.46782 * 299.99880 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99323 * 1 2 3 30 30 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46518 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47206 * 300.00111 * 3 2 1 33 33 H 1.09000 * 109.46801 * 60.00454 * 3 2 1 34 34 H 0.96992 * 120.00700 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46889 * 179.97438 * 12 2 1 36 36 H 1.09005 * 109.47382 * 59.99620 * 12 2 1 37 37 H 0.97000 * 119.99863 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.68119 * 68.81725 * 18 16 14 39 39 H 1.09001 * 109.67650 * 308.27189 * 18 16 14 40 40 H 1.09008 * 109.67737 * 310.05993 * 19 18 16 41 41 H 1.09002 * 109.68273 * 189.51679 * 19 18 16 42 42 H 1.09008 * 109.25368 * 188.61137 * 20 19 18 43 43 H 1.09004 * 109.22504 * 69.17116 * 20 19 18 44 44 H 0.96701 * 113.99971 * 270.00000 * 23 22 21 45 45 H 1.08000 * 120.14349 * 180.02562 * 24 22 21 46 46 H 1.08001 * 120.08233 * 179.85019 * 25 24 22 47 47 H 1.08003 * 119.66342 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 3.1479 -2.2857 -3.6040 10 1 1.1674 -1.5864 -4.8166 11 1 3.1469 -0.1857 -4.8162 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6694 15 8 2.6490 -1.4203 3.7823 16 6 1.2838 0.1487 4.8978 17 1 0.9769 1.1670 4.6592 18 6 2.3355 0.1859 6.0048 19 6 1.6560 0.6384 7.3026 20 6 0.7283 -0.4787 7.7757 21 6 -0.1807 -0.9212 6.6592 22 6 -1.3216 -1.6463 6.9993 23 8 -1.5844 -1.9182 8.3047 24 6 -2.1886 -2.0913 6.0161 25 6 -1.9200 -1.8135 4.6895 26 6 -0.7923 -1.0932 4.3538 27 6 0.0798 -0.6429 5.3373 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 0.7082 1.1612 -3.4843 35 1 3.1301 -0.7218 1.2489 36 1 1.6766 -1.7491 1.2492 37 1 0.9938 0.7577 2.3564 38 1 3.1240 0.8897 5.7385 39 1 2.7608 -0.8085 6.1405 40 1 1.0767 1.5430 7.1175 41 1 2.4115 0.8350 8.0633 42 1 0.1249 -0.1164 8.6081 43 1 1.3276 -1.3262 8.1085 44 1 -1.2016 -2.7491 8.6182 45 1 -3.0714 -2.6523 6.2849 46 1 -2.5910 -2.1597 3.9173 47 1 -0.5849 -0.8779 3.3160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:12 Heat of formation + Delta-G solvation = -95.534638 kcal Electronic energy + Delta-G solvation = -27238.759757 eV Core-core repulsion = 23577.697344 eV Total energy + Delta-G solvation = -3661.062413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87083 -40.42043 -38.42153 -37.78075 -36.66029 -35.02778 -33.22110 -32.30404 -31.29124 -29.49957 -27.56998 -27.55041 -26.96365 -24.97404 -23.81400 -23.31596 -21.57296 -20.66373 -20.37318 -19.14396 -18.31596 -17.64753 -17.19874 -17.04015 -16.76826 -16.47903 -16.35003 -15.97450 -15.12670 -14.99080 -14.89836 -14.68651 -14.58119 -14.31234 -14.02595 -13.74427 -13.52996 -13.27292 -13.19226 -13.11640 -12.84900 -12.67404 -12.58641 -12.49543 -12.26425 -12.21078 -12.14450 -11.82241 -11.70487 -11.48924 -11.28748 -11.07961 -10.82586 -10.67189 -10.40660 -9.95479 -9.61117 -9.48551 -8.03046 -6.18717 0.22583 0.30459 1.40328 1.44812 1.53894 1.62653 2.25297 2.47079 2.66421 3.20605 3.27722 3.52308 3.66213 3.85038 3.93460 4.06966 4.14991 4.24786 4.35681 4.41829 4.45381 4.50493 4.50666 4.63261 4.71039 4.88222 4.91991 4.97101 4.98909 4.99740 5.05248 5.10054 5.12281 5.18781 5.24748 5.35097 5.41336 5.42356 5.50505 5.56180 5.58277 5.66854 5.66976 5.86248 6.14761 6.21277 6.43003 6.63683 6.84938 6.85606 7.27946 7.49179 8.95875 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003171 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.987302 B = 8829.026780 C = 9492.494247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.148 3.852 13 N -0.709 5.709 14 C 0.516 3.484 15 O -0.585 6.585 16 C -0.059 4.059 17 H 0.120 0.880 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.075 4.075 21 C -0.101 4.101 22 C 0.099 3.901 23 O -0.500 6.500 24 C -0.147 4.147 25 C -0.110 4.110 26 C -0.145 4.145 27 C -0.062 4.062 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.408 0.592 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.407 0.593 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -0.017 21.286 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.360 5.360 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.080 4.080 17 H 0.138 0.862 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.102 4.102 22 C 0.054 3.946 23 O -0.312 6.312 24 C -0.166 4.166 25 C -0.128 4.128 26 C -0.164 4.164 27 C -0.063 4.063 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.245 0.755 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.266 0.734 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.829 -0.046 21.184 21.727 hybrid contribution 0.348 -0.799 -1.629 1.848 sum -4.481 -0.845 19.555 20.079 Atomic orbital electron populations 1.21658 0.97009 0.98664 1.00369 1.18345 0.93292 0.92961 0.90219 1.21675 0.97916 0.97886 1.00410 1.21299 1.31649 1.12110 0.91624 0.93875 1.25431 0.95145 0.95581 1.00906 1.69905 1.36979 1.23272 1.23535 0.85729 0.78143 0.78735 0.80327 1.20081 1.20692 1.20747 1.21263 0.97030 0.94937 0.84319 1.46267 1.52621 1.31848 1.05307 1.20961 0.80447 0.83121 0.85189 1.90637 1.37275 1.31293 1.87316 1.20240 0.94618 1.00113 0.93072 0.86195 1.21480 0.96347 1.02627 0.93831 1.21546 0.98881 0.98090 0.96240 1.20408 0.96295 0.99227 0.95227 1.20093 0.95990 0.99974 0.94129 1.18460 0.93425 0.98499 0.84177 1.84737 1.77975 1.46524 1.21999 1.21586 1.01045 1.01593 0.92344 1.21149 0.97049 0.97885 0.96764 1.21457 0.95705 0.99764 0.99441 1.19102 0.95014 0.99318 0.92842 0.94481 0.91934 0.96247 0.96345 0.91871 0.94441 0.93035 0.94470 0.94481 0.75452 0.90328 0.92062 0.90676 0.88812 0.89130 0.90050 0.73381 0.83508 0.84205 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -27.88 8.01 25.60 0.21 -27.68 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -47.60 9.35 21.45 0.20 -47.40 16 8 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.29 4.51 86.38 0.39 6.68 16 13 N -0.71 -24.22 4.16 -463.06 -1.92 -26.14 16 14 C 0.52 17.40 5.69 87.66 0.50 17.90 16 15 O -0.58 -24.59 16.14 -3.03 -0.05 -24.64 16 16 C -0.06 -1.49 2.59 -12.39 -0.03 -1.52 16 17 H 0.12 2.45 8.06 -2.39 -0.02 2.43 16 18 C -0.10 -2.29 5.08 30.61 0.16 -2.13 16 19 C -0.11 -1.72 5.98 30.61 0.18 -1.54 16 20 C -0.07 -1.26 5.28 29.73 0.16 -1.10 16 21 C -0.10 -2.25 5.75 -19.77 -0.11 -2.37 16 22 C 0.10 2.06 6.66 22.60 0.15 2.21 16 23 O -0.50 -8.10 12.53 -92.51 -1.16 -9.26 16 24 C -0.15 -3.07 9.98 22.30 0.22 -2.85 16 25 C -0.11 -2.60 10.04 22.19 0.22 -2.38 16 26 C -0.15 -3.95 9.04 22.37 0.20 -3.74 16 27 C -0.06 -1.59 5.42 -19.87 -0.11 -1.70 16 28 H 0.04 1.34 6.86 -2.38 -0.02 1.33 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 33 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.41 12.17 6.10 -92.71 -0.57 11.61 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.60 7.52 -2.39 -0.02 1.58 16 40 H 0.07 1.09 8.10 -2.38 -0.02 1.07 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.36 7.75 -2.38 -0.02 1.34 16 43 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.41 2.98 9.06 -74.06 -0.67 2.31 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 46 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 47 H 0.12 3.39 6.63 -2.91 -0.02 3.37 16 Total: -1.00 -64.70 367.12 2.55 -62.15 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.25 Total: 25.97 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.71 Total: -25.26 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.72 Total: -73.54 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.21 Total: -33.90 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -64.70 2.55 -62.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.386 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds