Wall clock time and date at job start Tue Mar 31 2020 12:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 C 1.47532 * 119.99530 * 179.72393 * 14 13 12 17 17 C 1.39704 * 120.19577 * 359.72055 * 16 14 13 18 18 C 1.37786 * 119.91227 * 179.78678 * 17 16 14 19 19 C 1.38554 * 120.29823 * 0.49236 * 18 17 16 20 20 C 1.38052 * 120.38753 * 359.74270 * 19 18 17 21 21 C 1.38710 * 120.08585 * 0.02562 * 20 19 18 22 22 O 1.35658 * 120.14962 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99887 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.46989 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.50000 * 243.62479 * 24 23 22 26 26 C 1.53001 * 117.50016 * 175.00110 * 24 23 22 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 37 37 H 1.07999 * 120.04452 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.85487 * 180.25375 * 18 17 16 39 39 H 1.07998 * 119.80446 * 179.76219 * 19 18 17 40 40 H 1.08009 * 119.95864 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47372 * 299.99617 * 23 22 21 42 42 H 1.08994 * 109.47184 * 60.00274 * 23 22 21 43 43 H 1.08999 * 115.54953 * 29.32659 * 24 23 22 44 44 H 1.09002 * 117.49880 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.50197 * 145.02429 * 25 24 23 46 46 H 1.08999 * 117.49875 * 214.98490 * 26 24 23 47 47 H 1.08995 * 117.49741 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 6 1.3950 0.2114 4.8741 17 6 0.5964 1.3510 4.7505 18 6 0.1414 1.9969 5.8793 19 6 0.4805 1.5272 7.1379 20 6 1.2730 0.4051 7.2744 21 6 1.7360 -0.2603 6.1488 22 8 2.5152 -1.3628 6.2814 23 6 2.8207 -1.7851 7.6120 24 6 3.7020 -3.0347 7.5608 25 6 3.1293 -4.3275 8.1453 26 6 4.2368 -3.5770 8.8878 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7090 1.1613 -3.4845 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 0.3336 1.7235 3.7714 38 1 -0.4793 2.8754 5.7827 39 1 0.1226 2.0419 8.0174 40 1 1.5328 0.0447 8.2589 41 1 3.3501 -0.9879 8.1337 42 1 1.8961 -2.0146 8.1417 43 1 4.3465 -3.1199 6.6859 44 1 2.1249 -4.2877 8.5668 45 1 3.3971 -5.2635 7.6551 46 1 5.2331 -4.0191 8.8859 47 1 3.9611 -3.0432 9.7972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:08 Heat of formation + Delta-G solvation = -28.065609 kcal Electronic energy + Delta-G solvation = -26400.192755 eV Core-core repulsion = 22742.056018 eV Total energy + Delta-G solvation = -3658.136736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52507 -38.87472 -37.82683 -36.72085 -36.19947 -33.24667 -31.59475 -30.47319 -30.18005 -27.65700 -25.69090 -25.68822 -25.04077 -23.47068 -22.68383 -22.18596 -20.97055 -19.98584 -18.88357 -18.34108 -17.22578 -16.46822 -15.99641 -15.77741 -15.34726 -15.05891 -14.80813 -14.68001 -14.51761 -14.42481 -14.00777 -13.12489 -13.07268 -13.04101 -12.84779 -12.44559 -12.13119 -11.94229 -11.85472 -11.62679 -11.45630 -11.33318 -11.16553 -11.14447 -10.81399 -10.72309 -10.70296 -10.34523 -10.21077 -10.17074 -9.59209 -9.45401 -9.16018 -9.13689 -8.75866 -8.41484 -8.33234 -8.14050 -5.99053 -4.08918 0.87926 1.30932 2.94662 3.17324 3.32511 3.36454 3.40186 3.56043 3.79969 4.00535 4.41408 4.42969 4.57317 4.64259 4.67508 4.74692 4.91977 5.00444 5.06030 5.22214 5.27179 5.27590 5.31046 5.33500 5.48952 5.60657 5.71530 5.81288 5.97654 6.06704 6.15300 6.31261 6.33233 6.39365 6.55276 6.60377 6.84610 6.85812 6.98832 7.06455 7.11642 7.35464 7.40558 7.59251 7.72483 8.04545 8.12685 8.22931 8.42529 8.83423 8.92416 9.56651 11.02386 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002987 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.623154 B = 9373.214341 C =10868.688603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.715 5.715 14 C 0.547 3.453 15 O -0.530 6.530 16 C -0.163 4.163 17 C -0.048 4.048 18 C -0.168 4.168 19 C -0.060 4.060 20 C -0.225 4.225 21 C 0.183 3.817 22 O -0.272 6.272 23 C 0.085 3.915 24 C -0.153 4.153 25 C -0.175 4.175 26 C -0.172 4.172 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.395 0.605 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 0.525 22.738 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.333 3.667 15 O -0.408 6.408 16 C -0.167 4.167 17 C -0.066 4.066 18 C -0.186 4.186 19 C -0.078 4.078 20 C -0.244 4.244 21 C 0.135 3.865 22 O -0.183 6.183 23 C 0.010 3.990 24 C -0.171 4.171 25 C -0.212 4.212 26 C -0.209 4.209 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.066 -0.227 22.480 22.481 hybrid contribution -0.045 0.059 -0.647 0.651 sum -0.111 -0.168 21.834 21.835 Atomic orbital electron populations 1.21834 0.97798 0.99221 1.00016 1.18349 0.92769 0.92740 0.90577 1.21836 0.98647 0.98378 1.00019 1.20963 1.31461 1.12095 0.89917 0.92471 1.24874 0.94872 0.94922 0.98808 1.69792 1.36718 1.22749 1.23284 0.86636 0.79246 0.79802 0.82189 1.20282 1.21352 1.20288 1.21700 0.98127 0.95774 0.83256 1.46220 1.52779 1.31896 1.05819 1.17978 0.81117 0.84465 0.83093 1.90782 1.37670 1.25725 1.86605 1.19605 1.05639 0.99556 0.91889 1.21276 0.93391 0.92406 0.99568 1.20983 1.03614 1.01946 0.92075 1.21062 0.94704 0.94348 0.97684 1.21201 1.05565 1.00077 0.97511 1.19015 0.88881 0.85858 0.92739 1.86395 1.63404 1.40247 1.28241 1.22359 0.98008 0.95585 0.83053 1.22085 1.02685 0.93505 0.98815 1.23083 0.98347 0.96168 1.03598 1.22985 0.99270 1.03782 0.94867 0.97559 0.89584 0.95402 0.95402 0.89580 0.97557 0.92978 0.92728 0.92720 0.76924 0.84787 0.85315 0.85568 0.85196 0.91684 0.92020 0.86109 0.88663 0.88329 0.88210 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 4 C -0.51 -13.46 8.01 -34.44 -0.28 -13.74 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.81 9.35 55.43 0.52 -23.29 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.13 2.97 4.50 -4.04 -0.02 2.95 16 13 N -0.72 -13.65 4.91 -61.35 -0.30 -13.95 16 14 C 0.55 10.66 7.76 -12.47 -0.10 10.56 16 15 O -0.53 -12.09 15.16 -16.59 -0.25 -12.35 16 16 C -0.16 -2.59 5.89 -104.85 -0.62 -3.20 16 17 C -0.05 -0.61 9.53 -39.20 -0.37 -0.98 16 18 C -0.17 -1.73 10.02 -39.63 -0.40 -2.13 16 19 C -0.06 -0.57 10.03 -39.53 -0.40 -0.97 16 20 C -0.22 -2.47 9.03 -39.48 -0.36 -2.83 16 21 C 0.18 2.69 6.70 -38.69 -0.26 2.43 16 22 O -0.27 -4.24 8.21 -40.55 -0.33 -4.57 16 23 C 0.09 0.92 5.02 37.16 0.19 1.11 16 24 C -0.15 -1.60 6.06 -90.62 -0.55 -2.15 16 25 C -0.18 -1.54 10.18 -26.73 -0.27 -1.81 16 26 C -0.17 -1.31 10.25 -26.73 -0.27 -1.59 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.05 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.39 6.73 4.19 -40.82 -0.17 6.56 16 37 H 0.13 1.54 6.40 -52.49 -0.34 1.20 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 41 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 42 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 43 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -30.77 376.44 -10.13 -40.90 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.15 Total: 6.49 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.27 Total: -14.82 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.22 Total: -37.24 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.58 Total: -16.92 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.77 -10.13 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.836 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds