Wall clock time and date at job start Tue Mar 31 2020 12:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 C 1.47532 * 119.99530 * 179.72393 * 14 13 12 17 17 C 1.39704 * 120.19577 * 359.72055 * 16 14 13 18 18 C 1.37786 * 119.91227 * 179.78678 * 17 16 14 19 19 C 1.38554 * 120.29823 * 0.49236 * 18 17 16 20 20 C 1.38052 * 120.38753 * 359.74270 * 19 18 17 21 21 C 1.38710 * 120.08585 * 0.02562 * 20 19 18 22 22 O 1.35658 * 120.14962 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99887 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.46989 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.50000 * 243.62479 * 24 23 22 26 26 C 1.53001 * 117.50016 * 175.00110 * 24 23 22 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 37 37 H 1.07999 * 120.04452 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.85487 * 180.25375 * 18 17 16 39 39 H 1.07998 * 119.80446 * 179.76219 * 19 18 17 40 40 H 1.08009 * 119.95864 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47372 * 299.99617 * 23 22 21 42 42 H 1.08994 * 109.47184 * 60.00274 * 23 22 21 43 43 H 1.08999 * 115.54953 * 29.32659 * 24 23 22 44 44 H 1.09002 * 117.49880 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.50197 * 145.02429 * 25 24 23 46 46 H 1.08999 * 117.49875 * 214.98490 * 26 24 23 47 47 H 1.08995 * 117.49741 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 6 1.3950 0.2114 4.8741 17 6 0.5964 1.3510 4.7505 18 6 0.1414 1.9969 5.8793 19 6 0.4805 1.5272 7.1379 20 6 1.2730 0.4051 7.2744 21 6 1.7360 -0.2603 6.1488 22 8 2.5152 -1.3628 6.2814 23 6 2.8207 -1.7851 7.6120 24 6 3.7020 -3.0347 7.5608 25 6 3.1293 -4.3275 8.1453 26 6 4.2368 -3.5770 8.8878 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7090 1.1613 -3.4845 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 0.3336 1.7235 3.7714 38 1 -0.4793 2.8754 5.7827 39 1 0.1226 2.0419 8.0174 40 1 1.5328 0.0447 8.2589 41 1 3.3501 -0.9879 8.1337 42 1 1.8961 -2.0146 8.1417 43 1 4.3465 -3.1199 6.6859 44 1 2.1249 -4.2877 8.5668 45 1 3.3971 -5.2635 7.6551 46 1 5.2331 -4.0191 8.8859 47 1 3.9611 -3.0432 9.7972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:07 Heat of formation + Delta-G solvation = -43.737458 kcal Electronic energy + Delta-G solvation = -26400.872337 eV Core-core repulsion = 22742.056018 eV Total energy + Delta-G solvation = -3658.816319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59935 -40.22763 -38.76703 -38.00774 -37.54355 -35.00941 -33.07240 -31.92487 -31.07133 -28.51275 -27.57910 -27.49899 -26.86246 -24.62517 -23.34859 -23.11092 -21.96630 -21.19014 -20.63734 -19.51818 -18.45051 -17.75004 -17.38954 -16.98086 -16.65740 -16.43933 -16.12716 -15.93143 -15.67212 -15.60854 -14.92537 -14.81209 -14.57182 -14.45958 -14.01826 -13.85355 -13.63258 -13.18806 -13.10868 -12.79232 -12.68237 -12.63119 -12.49335 -12.44841 -12.26905 -12.25471 -12.13933 -11.99225 -11.50062 -11.43489 -11.28000 -10.93330 -10.80849 -10.68394 -10.40457 -10.13966 -9.86998 -9.20549 -8.02893 -6.18812 -0.10568 0.42467 1.43811 1.44381 1.51563 1.96219 2.10395 2.30619 2.49667 2.84593 2.89555 3.20358 3.65033 3.74065 3.85741 3.86851 4.02116 4.05100 4.16322 4.26792 4.39596 4.41460 4.47753 4.48869 4.53447 4.60394 4.68865 4.72835 4.86159 4.95962 4.97427 5.03713 5.10717 5.16463 5.17714 5.19987 5.21281 5.34110 5.35803 5.47967 5.58343 5.65777 5.66081 5.79799 6.13548 6.19697 6.42557 6.44775 6.70460 6.84392 7.34733 7.48621 8.96142 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002987 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.623154 B = 9373.214341 C =10868.688603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.121 4.121 4 C -0.533 4.533 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.150 3.850 13 N -0.709 5.709 14 C 0.544 3.456 15 O -0.576 6.576 16 C -0.201 4.201 17 C -0.052 4.052 18 C -0.163 4.163 19 C -0.043 4.043 20 C -0.221 4.221 21 C 0.163 3.837 22 O -0.311 6.311 23 C 0.083 3.917 24 C -0.183 4.183 25 C -0.179 4.179 26 C -0.145 4.145 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.406 0.594 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 2.226 25.643 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.053 3.947 3 C -0.179 4.179 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.361 5.361 14 C 0.333 3.667 15 O -0.457 6.457 16 C -0.205 4.205 17 C -0.071 4.071 18 C -0.180 4.180 19 C -0.061 4.061 20 C -0.239 4.239 21 C 0.115 3.885 22 O -0.224 6.224 23 C 0.008 3.992 24 C -0.201 4.201 25 C -0.216 4.216 26 C -0.182 4.182 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.244 0.756 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.176 0.824 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.125 0.875 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.360 1.501 25.395 25.475 hybrid contribution 0.341 -0.453 -1.447 1.554 sum -1.019 1.048 23.948 23.993 Atomic orbital electron populations 1.21680 0.97035 0.98682 1.00481 1.18338 0.93308 0.93034 0.90037 1.21682 0.97911 0.97809 1.00486 1.21245 1.31946 1.12264 0.91666 0.93907 1.25443 0.95075 0.95592 1.00897 1.69888 1.36860 1.23181 1.23753 0.85810 0.78611 0.78815 0.79534 1.20296 1.20542 1.20314 1.21263 0.96813 0.95009 0.84275 1.46016 1.52993 1.32074 1.05037 1.18657 0.80074 0.83949 0.84035 1.90745 1.39787 1.27882 1.87290 1.19456 1.08801 1.01573 0.90640 1.21435 0.92951 0.91556 1.01151 1.21403 1.02903 1.02302 0.91432 1.21615 0.92450 0.93085 0.98947 1.21540 1.04966 1.00025 0.97413 1.19345 0.89445 0.86247 0.93487 1.86353 1.63943 1.41037 1.31039 1.22591 0.98977 0.95990 0.81609 1.22071 1.03740 0.94775 0.99550 1.23179 0.99523 0.95231 1.03668 1.23098 0.99198 1.02004 0.93923 0.94502 0.91536 0.96410 0.96413 0.91533 0.94494 0.92901 0.94682 0.94674 0.75594 0.84133 0.82018 0.81307 0.82428 0.89951 0.90186 0.89361 0.87552 0.88747 0.87492 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 2 C 0.05 2.58 0.50 -52.93 -0.03 2.56 16 3 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 4 C -0.53 -29.19 8.01 25.60 0.21 -28.98 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.61 5.15 84.65 0.44 2.04 16 7 N -0.90 -48.53 9.35 21.45 0.20 -48.33 16 8 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.15 6.96 4.50 86.38 0.39 7.35 16 13 N -0.71 -27.69 4.91 -466.27 -2.29 -29.98 16 14 C 0.54 22.06 7.76 86.69 0.67 22.73 16 15 O -0.58 -28.08 15.16 16.94 0.26 -27.82 16 16 C -0.20 -6.37 5.89 -20.01 -0.12 -6.49 16 17 C -0.05 -1.23 9.53 22.52 0.21 -1.02 16 18 C -0.16 -2.67 10.02 22.24 0.22 -2.45 16 19 C -0.04 -0.62 10.03 22.30 0.22 -0.39 16 20 C -0.22 -4.15 9.03 22.34 0.20 -3.95 16 21 C 0.16 4.68 6.70 22.84 0.15 4.83 16 22 O -0.31 -10.02 8.21 -68.82 -0.56 -10.58 16 23 C 0.08 1.74 5.02 71.98 0.36 2.10 16 24 C -0.18 -3.92 6.06 -10.79 -0.07 -3.99 16 25 C -0.18 -3.06 10.18 30.60 0.31 -2.75 16 26 C -0.15 -1.99 10.25 30.60 0.31 -1.68 16 27 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 28 H 0.07 3.34 6.07 -2.38 -0.01 3.33 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 3.35 6.07 -2.38 -0.01 3.33 16 32 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 33 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 13.66 4.19 -92.71 -0.39 13.27 16 37 H 0.14 2.96 6.40 -2.91 -0.02 2.94 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 41 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 42 H 0.08 1.32 7.39 -2.39 -0.02 1.30 16 43 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.11 1.55 8.03 -2.39 -0.02 1.53 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.89 376.44 4.87 -66.02 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.58 Total: 25.28 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.66 Total: -20.05 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.09 Total: -78.31 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.31 Total: -38.40 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.89 4.87 -66.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.279 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds