Wall clock time and date at job start Tue Mar 31 2020 12:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46702 * 2 1 4 4 C 1.50699 * 109.46942 * 240.00360 * 2 1 3 5 5 H 1.08001 * 119.99408 * 239.99649 * 4 2 1 6 6 C 1.37873 * 120.00206 * 59.99674 * 4 2 1 7 7 N 1.31513 * 120.00328 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47549 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46661 * 119.99917 * 8 6 4 11 11 H 1.48497 * 109.47477 * 240.00073 * 8 6 4 12 12 C 1.52997 * 109.47106 * 119.99865 * 2 1 3 13 13 N 1.46497 * 109.47040 * 300.00140 * 12 2 1 14 14 C 1.34783 * 119.99704 * 180.02562 * 13 12 2 15 15 O 1.21277 * 120.00116 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99922 * 179.97438 * 14 13 12 17 17 O 1.42901 * 109.47516 * 179.97438 * 16 14 13 18 18 C 1.42893 * 114.00493 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.32564 * 120.00601 * 135.99695 * 19 18 17 21 21 C 1.47813 * 119.99292 * 8.07111 * 20 19 18 22 22 C 1.39532 * 120.14779 * 34.97599 * 21 20 19 23 23 C 1.37970 * 119.86028 * 179.97438 * 22 21 20 24 24 C 1.38347 * 120.14274 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.28318 * 0.02562 * 24 23 22 26 26 C 1.37969 * 120.14252 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.46824 * 299.99665 * 1 2 3 28 28 H 1.08993 * 109.47417 * 60.00322 * 1 2 3 29 29 H 1.09001 * 109.46467 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47192 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47410 * 300.00258 * 3 2 1 32 32 H 1.08998 * 109.47456 * 60.00101 * 3 2 1 33 33 H 0.97000 * 120.00262 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46853 * 180.02562 * 12 2 1 35 35 H 1.08989 * 109.47130 * 60.00343 * 12 2 1 36 36 H 0.97000 * 120.00426 * 0.02562 * 13 12 2 37 37 H 1.09002 * 109.47351 * 59.99810 * 16 14 13 38 38 H 1.09001 * 109.47336 * 300.00288 * 16 14 13 39 39 H 1.09008 * 109.47093 * 60.00277 * 18 17 16 40 40 H 1.08996 * 109.47074 * 300.00215 * 18 17 16 41 41 H 1.08008 * 119.99961 * 316.00291 * 19 18 17 42 42 H 1.07991 * 120.00643 * 188.06451 * 20 19 18 43 43 H 1.08007 * 120.07092 * 359.96221 * 22 21 20 44 44 H 1.08004 * 119.92934 * 180.02562 * 23 22 21 45 45 H 1.07996 * 119.85770 * 179.74341 * 24 23 22 46 46 H 1.07993 * 119.92693 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.07152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5866 -4.8164 11 1 3.1472 -0.1857 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8778 -0.4908 3.6695 15 8 2.5758 -1.4763 3.7808 16 6 1.3759 0.2199 4.8999 17 8 1.8521 -0.4537 6.0668 18 6 1.4314 0.1432 7.2950 19 6 1.9875 -0.6448 8.4529 20 6 2.5182 -0.0132 9.4906 21 6 2.4059 1.4568 9.5973 22 6 1.2581 2.1068 9.1423 23 6 1.1594 3.4791 9.2452 24 6 2.1951 4.2106 9.7986 25 6 3.3358 3.5722 10.2516 26 6 3.4474 2.2005 10.1535 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7086 1.1613 -3.4844 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7488 1.2492 36 1 0.9937 0.7579 2.3564 37 1 0.2859 0.2200 4.9004 38 1 1.7392 1.2476 4.8996 39 1 0.3424 0.1424 7.3451 40 1 1.7966 1.1689 7.3443 41 1 1.9538 -1.7242 8.4374 42 1 3.0324 -0.5725 10.2580 43 1 0.4488 1.5369 8.7102 44 1 0.2713 3.9834 8.8937 45 1 2.1147 5.2850 9.8731 46 1 4.1410 4.1489 10.6822 47 1 4.3383 1.7033 10.5079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:43 Heat of formation + Delta-G solvation = -41.426855 kcal Electronic energy + Delta-G solvation = -25355.706350 eV Core-core repulsion = 21696.990227 eV Total energy + Delta-G solvation = -3658.716123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83589 -39.34124 -37.72311 -36.26975 -34.88364 -33.28499 -31.39982 -31.00056 -30.19326 -28.37663 -26.28924 -25.74111 -25.42961 -24.35808 -22.84841 -22.60410 -20.34929 -19.57982 -18.81375 -17.49106 -16.79491 -16.58009 -16.43629 -15.90614 -15.72691 -15.23049 -14.86683 -14.74592 -14.64871 -14.14415 -13.78152 -13.72278 -13.33084 -12.95255 -12.91423 -12.87727 -12.44784 -12.19295 -12.14886 -11.85370 -11.40493 -11.37992 -11.20975 -11.00347 -10.88179 -10.66692 -10.40564 -10.34893 -10.20823 -9.73116 -9.64897 -9.52261 -9.23210 -9.19889 -8.78880 -8.57506 -8.46807 -8.32374 -6.03118 -4.12941 0.66300 1.06756 1.98559 3.02066 3.17554 3.26947 3.35649 3.40925 3.52687 4.16802 4.39820 4.43765 4.53510 4.63395 4.77056 4.81626 4.98857 5.02549 5.08564 5.13210 5.19066 5.20732 5.23804 5.24932 5.47365 5.61412 5.71576 6.00076 6.04102 6.18379 6.21196 6.26699 6.32363 6.41616 6.49299 6.65319 6.76993 6.80615 6.88130 6.97338 7.00704 7.04502 7.34477 7.54302 7.68839 7.99777 8.02894 8.14524 8.37655 8.69514 8.88133 9.52984 10.98379 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.002044 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.035808 B =13692.970139 C =14228.470326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.134 3.866 13 N -0.716 5.716 14 C 0.505 3.495 15 O -0.532 6.532 16 C 0.044 3.956 17 O -0.359 6.359 18 C 0.076 3.924 19 C -0.128 4.128 20 C -0.119 4.119 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.108 4.108 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 6.812 24.730 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.369 5.369 14 C 0.289 3.711 15 O -0.408 6.408 16 C -0.036 4.036 17 O -0.277 6.277 18 C 0.001 3.999 19 C -0.146 4.146 20 C -0.137 4.137 21 C -0.059 4.059 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.126 4.126 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.873 6.033 24.641 25.383 hybrid contribution -0.138 0.203 -0.878 0.912 sum -1.011 6.236 23.762 24.588 Atomic orbital electron populations 1.21835 0.97731 0.99219 1.00083 1.18376 0.92839 0.92797 0.90567 1.21835 0.98647 0.98324 1.00087 1.21023 1.31348 1.12076 0.89837 0.92345 1.24884 0.94876 0.94946 0.98884 1.69810 1.36756 1.22815 1.23120 0.86510 0.78639 0.79762 0.82951 1.19741 1.21073 1.21062 1.21734 0.98223 0.95807 0.83097 1.46208 1.52995 1.32029 1.05633 1.20117 0.81441 0.85172 0.84398 1.90696 1.37395 1.26069 1.86658 1.22255 0.99262 0.96375 0.85707 1.88027 1.74216 1.53357 1.12109 1.22023 0.98123 0.96332 0.83464 1.23063 0.97648 1.00625 0.93233 1.21657 1.00221 0.91964 0.99879 1.19134 0.94495 0.93359 0.98905 1.21513 0.97646 0.94801 0.99491 1.21124 0.99095 0.93992 0.99648 1.21240 0.93913 0.99992 0.98692 1.21120 0.98042 0.94596 1.00077 1.21292 0.98191 0.94021 0.99074 0.97504 0.89562 0.95400 0.95393 0.89566 0.97494 0.93067 0.92633 0.92622 0.76728 0.90513 0.90530 0.92204 0.91330 0.85464 0.85393 0.85557 0.85802 0.86047 0.85939 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.18 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.84 16 13 N -0.72 -12.69 4.96 -60.30 -0.30 -12.99 16 14 C 0.50 9.05 7.91 -10.98 -0.09 8.96 16 15 O -0.53 -11.94 16.50 -14.35 -0.24 -12.18 16 16 C 0.04 0.58 6.42 36.00 0.23 0.81 16 17 O -0.36 -5.27 9.86 -55.14 -0.54 -5.82 16 18 C 0.08 0.80 4.52 36.00 0.16 0.97 16 19 C -0.13 -1.25 9.84 -36.22 -0.36 -1.61 16 20 C -0.12 -1.03 9.81 -37.57 -0.37 -1.40 16 21 C -0.06 -0.53 5.19 -105.01 -0.54 -1.07 16 22 C -0.12 -0.98 7.41 -39.20 -0.29 -1.27 16 23 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 24 C -0.12 -0.89 10.04 -39.50 -0.40 -1.29 16 25 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 26 C -0.11 -0.89 9.79 -39.19 -0.38 -1.28 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 33 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.94 -0.42 0.83 16 36 H 0.40 6.15 6.16 -40.82 -0.25 5.90 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.51 7.52 -51.92 -0.39 0.12 16 40 H 0.07 0.70 5.29 -51.93 -0.27 0.42 16 41 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 0.91 5.79 -52.48 -0.30 0.61 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -31.12 380.71 -9.72 -40.83 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.18 Total: 4.54 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.69 Total: -12.86 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.22 Total: -35.96 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.78 Total: -18.00 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.12 -9.72 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.596 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds