Wall clock time and date at job start Tue Mar 31 2020 12:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47225 * 2 1 4 4 C 1.50700 * 109.46980 * 240.00212 * 2 1 3 5 5 H 1.07996 * 120.00214 * 240.00486 * 4 2 1 6 6 C 1.37881 * 120.00080 * 59.99974 * 4 2 1 7 7 N 1.31517 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47434 * 59.99926 * 8 6 4 10 10 H 1.48500 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46826 * 299.99417 * 8 6 4 12 12 C 1.52997 * 109.47346 * 120.00638 * 2 1 3 13 13 N 1.46499 * 109.46939 * 299.99679 * 12 2 1 14 14 C 1.34778 * 120.00175 * 179.97438 * 13 12 2 15 15 O 1.21548 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.47848 * 120.00123 * 179.97438 * 14 13 12 17 17 C 1.39599 * 120.14489 * 0.02802 * 16 14 13 18 18 C 1.37929 * 119.85212 * 179.97438 * 17 16 14 19 19 C 1.38380 * 120.14853 * 359.73800 * 18 17 16 20 20 C 1.38338 * 120.28804 * 0.51487 * 19 18 17 21 21 C 1.50701 * 119.92660 * 179.76174 * 20 19 18 22 22 H 1.09001 * 110.98778 * 182.47172 * 21 20 19 23 23 C 1.55312 * 111.12394 * 306.71423 * 21 20 19 24 24 C 1.54380 * 102.25056 * 152.05243 * 23 21 20 25 25 O 1.43245 * 107.59000 * 338.64209 * 24 23 21 26 26 C 1.43641 * 109.97171 * 358.29008 * 25 24 23 27 27 C 1.37972 * 120.14772 * 359.48882 * 20 19 18 28 28 H 1.08998 * 109.46618 * 299.99542 * 1 2 3 29 29 H 1.08993 * 109.47253 * 59.99439 * 1 2 3 30 30 H 1.09005 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47121 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.46986 * 300.00668 * 3 2 1 33 33 H 1.09003 * 109.46663 * 59.99998 * 3 2 1 34 34 H 0.96999 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47397 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.47527 * 59.99232 * 12 2 1 37 37 H 0.97000 * 120.00267 * 0.02562 * 13 12 2 38 38 H 1.07997 * 120.07114 * 359.97438 * 17 16 14 39 39 H 1.08008 * 119.92813 * 179.97438 * 18 17 16 40 40 H 1.07999 * 119.85426 * 180.27718 * 19 18 17 41 41 H 1.08999 * 110.84840 * 33.86168 * 23 21 20 42 42 H 1.08999 * 110.84966 * 270.23966 * 23 21 20 43 43 H 1.08996 * 109.83192 * 219.13077 * 24 23 21 44 44 H 1.09002 * 109.83458 * 98.15431 * 24 23 21 45 45 H 1.08996 * 110.31178 * 143.33952 * 26 25 24 46 46 H 1.09000 * 110.30769 * 265.41581 * 26 25 24 47 47 H 1.08006 * 120.07701 * 180.22866 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0080 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4917 3.6694 15 8 2.5758 -1.4799 3.7809 16 6 1.3847 0.2056 4.8767 17 6 0.5824 1.3412 4.7522 18 6 0.1260 1.9866 5.8825 19 6 0.4573 1.5077 7.1378 20 6 1.2563 0.3860 7.2681 21 6 1.6164 -0.1254 8.6392 22 1 2.2832 -0.9851 8.5726 23 6 2.2380 0.9999 9.5108 24 6 1.8605 0.5537 10.9397 25 8 0.7426 -0.3357 10.8344 26 6 0.3468 -0.4656 9.4597 27 6 1.7195 -0.2691 6.1456 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7080 1.1610 -3.4843 35 1 3.1300 -0.7218 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.9939 0.7576 2.3565 38 1 0.3196 1.7134 3.7731 39 1 -0.4945 2.8656 5.7876 40 1 0.0936 2.0142 8.0196 41 1 1.7903 1.9653 9.2749 42 1 3.3205 1.0326 9.3880 43 1 1.5866 1.4225 11.5382 44 1 2.7023 0.0365 11.4002 45 1 0.0253 -1.4864 9.2534 46 1 -0.4542 0.2367 9.2287 47 1 2.3402 -1.1469 6.2487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:36 Heat of formation + Delta-G solvation = -69.912243 kcal Electronic energy + Delta-G solvation = -26093.817070 eV Core-core repulsion = 22433.865728 eV Total energy + Delta-G solvation = -3659.951342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53137 -39.53917 -38.14101 -36.36028 -33.94362 -33.21415 -31.36473 -30.91454 -30.38859 -28.70425 -25.83899 -25.76504 -25.16704 -23.94339 -22.89815 -22.41440 -21.48975 -19.70675 -18.88145 -17.84654 -16.97922 -16.40522 -16.07965 -15.75047 -15.60239 -15.04053 -14.81794 -14.76337 -14.51711 -14.13490 -13.93016 -13.49111 -13.28332 -13.22771 -12.92609 -12.68038 -12.52031 -12.20425 -11.90891 -11.77729 -11.62260 -11.40358 -11.26982 -11.21062 -11.03409 -10.87301 -10.75277 -10.42162 -10.23078 -9.89755 -9.69127 -9.67206 -9.30600 -9.10001 -8.94742 -8.83182 -8.47973 -8.34028 -6.04466 -4.14596 0.77547 1.15417 2.97077 3.28774 3.33087 3.36305 3.49125 3.63352 3.82468 4.18281 4.29820 4.38413 4.57512 4.67756 4.72380 4.74252 4.81984 4.88608 5.08718 5.12395 5.22283 5.30102 5.35833 5.40257 5.44345 5.55076 5.65239 5.70977 5.82608 6.15070 6.20066 6.24478 6.28773 6.32204 6.46798 6.60052 6.69854 6.73297 6.77786 6.90139 6.96701 6.98154 7.31532 7.52016 7.66700 7.97497 7.98427 8.11478 8.35234 8.61142 8.85718 9.51217 10.96989 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036972 B = 0.002286 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.141650 B =12247.569012 C =12601.960246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.097 4.097 20 C -0.087 4.087 21 C -0.082 4.082 22 H 0.098 0.902 23 C -0.149 4.149 24 C 0.050 3.950 25 O -0.385 6.385 26 C 0.059 3.941 27 C -0.056 4.056 28 H 0.005 0.995 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 4.611 22.144 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.087 4.087 21 C -0.101 4.101 22 H 0.116 0.884 23 C -0.187 4.187 24 C -0.027 4.027 25 O -0.305 6.305 26 C -0.017 4.017 27 C -0.075 4.075 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.616 3.919 22.191 22.593 hybrid contribution 0.166 0.121 -1.192 1.209 sum -1.450 4.040 20.999 21.434 Atomic orbital electron populations 1.21841 0.97739 0.99263 1.00058 1.18362 0.92817 0.92772 0.90544 1.21839 0.98675 0.98331 1.00057 1.20934 1.31584 1.12130 0.89840 0.92451 1.24883 0.94845 0.94929 0.98867 1.69789 1.36564 1.22742 1.23369 0.86618 0.79236 0.79792 0.82124 1.20266 1.21326 1.20277 1.21773 0.98285 0.95878 0.83203 1.46267 1.52148 1.31626 1.05907 1.18268 0.80850 0.84275 0.83506 1.90736 1.38683 1.26451 1.86949 1.20152 1.00810 0.97246 0.94160 1.21434 0.95601 0.94136 0.99382 1.21072 1.00612 1.00344 0.92017 1.21121 0.97126 0.95669 0.97618 1.19420 0.99249 0.96402 0.93664 1.21821 0.97724 0.98802 0.91710 0.88390 1.23268 1.02524 0.98987 0.93897 1.23145 0.89296 0.93465 0.96744 1.88412 1.49470 1.66737 1.25836 1.23512 0.95627 1.02303 0.80298 1.21154 0.97204 0.98841 0.90321 0.97614 0.89497 0.95353 0.95356 0.89506 0.97609 0.92925 0.92500 0.92497 0.76613 0.85317 0.85281 0.85823 0.90020 0.89563 0.91342 0.91141 0.89311 0.91682 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.14 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.35 9.35 55.43 0.52 -22.83 16 8 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.71 4.91 -61.25 -0.30 -13.01 16 14 C 0.54 9.72 7.77 -12.33 -0.10 9.62 16 15 O -0.55 -11.58 16.35 5.32 0.09 -11.49 16 16 C -0.12 -1.70 5.87 -104.96 -0.62 -2.31 16 17 C -0.09 -1.01 9.54 -39.19 -0.37 -1.38 16 18 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 19 C -0.10 -0.86 8.27 -39.49 -0.33 -1.19 16 20 C -0.09 -0.86 5.01 -104.68 -0.52 -1.39 16 21 C -0.08 -0.67 3.31 -89.52 -0.30 -0.97 16 22 H 0.10 0.80 7.96 -51.93 -0.41 0.39 16 23 C -0.15 -1.01 6.43 -24.78 -0.16 -1.17 16 24 C 0.05 0.36 7.79 37.88 0.30 0.65 16 25 O -0.39 -3.77 11.36 -35.23 -0.40 -4.17 16 26 C 0.06 0.49 7.21 38.19 0.28 0.77 16 27 C -0.06 -0.71 9.23 -39.19 -0.36 -1.07 16 28 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.40 6.37 4.20 -40.82 -0.17 6.20 16 38 H 0.13 1.38 6.41 -52.49 -0.34 1.05 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.83 6.99 -52.49 -0.37 0.46 16 41 H 0.08 0.51 6.75 -51.93 -0.35 0.16 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.51 7.05 -51.93 -0.37 0.14 16 47 H 0.14 1.74 7.58 -52.48 -0.40 1.35 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -29.25 369.66 -9.08 -38.33 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.09 Total: 5.09 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.45 Total: -13.07 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.22 Total: -35.84 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.31 Total: -15.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.25 -9.08 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.583 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds