Wall clock time and date at job start Tue Mar 31 2020 12:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47225 * 2 1 4 4 C 1.50700 * 109.46980 * 240.00212 * 2 1 3 5 5 H 1.07996 * 120.00214 * 240.00486 * 4 2 1 6 6 C 1.37881 * 120.00080 * 59.99974 * 4 2 1 7 7 N 1.31517 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47434 * 59.99926 * 8 6 4 10 10 H 1.48500 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46826 * 299.99417 * 8 6 4 12 12 C 1.52997 * 109.47346 * 120.00638 * 2 1 3 13 13 N 1.46499 * 109.46939 * 299.99679 * 12 2 1 14 14 C 1.34778 * 120.00175 * 179.97438 * 13 12 2 15 15 O 1.21548 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.47848 * 120.00123 * 179.97438 * 14 13 12 17 17 C 1.39599 * 120.14489 * 0.02802 * 16 14 13 18 18 C 1.37929 * 119.85212 * 179.97438 * 17 16 14 19 19 C 1.38380 * 120.14853 * 359.73800 * 18 17 16 20 20 C 1.38338 * 120.28804 * 0.51487 * 19 18 17 21 21 C 1.50701 * 119.92660 * 179.76174 * 20 19 18 22 22 H 1.09001 * 110.98778 * 182.47172 * 21 20 19 23 23 C 1.55312 * 111.12394 * 306.71423 * 21 20 19 24 24 C 1.54380 * 102.25056 * 152.05243 * 23 21 20 25 25 O 1.43245 * 107.59000 * 338.64209 * 24 23 21 26 26 C 1.43641 * 109.97171 * 358.29008 * 25 24 23 27 27 C 1.37972 * 120.14772 * 359.48882 * 20 19 18 28 28 H 1.08998 * 109.46618 * 299.99542 * 1 2 3 29 29 H 1.08993 * 109.47253 * 59.99439 * 1 2 3 30 30 H 1.09005 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47121 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.46986 * 300.00668 * 3 2 1 33 33 H 1.09003 * 109.46663 * 59.99998 * 3 2 1 34 34 H 0.96999 * 119.99998 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47397 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.47527 * 59.99232 * 12 2 1 37 37 H 0.97000 * 120.00267 * 0.02562 * 13 12 2 38 38 H 1.07997 * 120.07114 * 359.97438 * 17 16 14 39 39 H 1.08008 * 119.92813 * 179.97438 * 18 17 16 40 40 H 1.07999 * 119.85426 * 180.27718 * 19 18 17 41 41 H 1.08999 * 110.84840 * 33.86168 * 23 21 20 42 42 H 1.08999 * 110.84966 * 270.23966 * 23 21 20 43 43 H 1.08996 * 109.83192 * 219.13077 * 24 23 21 44 44 H 1.09002 * 109.83458 * 98.15431 * 24 23 21 45 45 H 1.08996 * 110.31178 * 143.33952 * 26 25 24 46 46 H 1.09000 * 110.30769 * 265.41581 * 26 25 24 47 47 H 1.08006 * 120.07701 * 180.22866 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0080 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4917 3.6694 15 8 2.5758 -1.4799 3.7809 16 6 1.3847 0.2056 4.8767 17 6 0.5824 1.3412 4.7522 18 6 0.1260 1.9866 5.8825 19 6 0.4573 1.5077 7.1378 20 6 1.2563 0.3860 7.2681 21 6 1.6164 -0.1254 8.6392 22 1 2.2832 -0.9851 8.5726 23 6 2.2380 0.9999 9.5108 24 6 1.8605 0.5537 10.9397 25 8 0.7426 -0.3357 10.8344 26 6 0.3468 -0.4656 9.4597 27 6 1.7195 -0.2691 6.1456 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7080 1.1610 -3.4843 35 1 3.1300 -0.7218 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.9939 0.7576 2.3565 38 1 0.3196 1.7134 3.7731 39 1 -0.4945 2.8656 5.7876 40 1 0.0936 2.0142 8.0196 41 1 1.7903 1.9653 9.2749 42 1 3.3205 1.0326 9.3880 43 1 1.5866 1.4225 11.5382 44 1 2.7023 0.0365 11.4002 45 1 0.0253 -1.4864 9.2534 46 1 -0.4542 0.2367 9.2287 47 1 2.3402 -1.1469 6.2487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457996786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:36 Heat of formation + Delta-G solvation = -85.974026 kcal Electronic energy + Delta-G solvation = -26094.513561 eV Core-core repulsion = 22433.865728 eV Total energy + Delta-G solvation = -3660.647834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47059 -40.58448 -39.14647 -38.07845 -35.21075 -34.43255 -32.83671 -32.02364 -31.18545 -29.43948 -27.58411 -27.53494 -26.94481 -24.92693 -23.77591 -23.06187 -22.43040 -20.88814 -20.64600 -18.90565 -17.90394 -17.66986 -17.24350 -16.84894 -16.73389 -16.46195 -16.32459 -15.87102 -15.50912 -15.11244 -14.83454 -14.68410 -14.67105 -14.47463 -14.13902 -13.94514 -13.79670 -13.21402 -13.18542 -13.10612 -12.69720 -12.64081 -12.62847 -12.45259 -12.30870 -12.25175 -12.14201 -11.99466 -11.65971 -11.50865 -11.33369 -10.96023 -10.72142 -10.50163 -10.40966 -10.14658 -9.86695 -9.71943 -8.03166 -6.18781 -0.16684 0.32882 1.43811 1.44983 1.51517 1.83437 2.22371 2.47885 2.78368 2.93470 3.20375 3.53272 3.60969 3.74081 3.93016 3.99402 4.09576 4.16586 4.22055 4.29448 4.32392 4.39633 4.47617 4.55826 4.67318 4.74452 4.81375 4.89079 4.90229 4.95736 4.99850 5.01685 5.02860 5.09404 5.16211 5.17007 5.31028 5.34739 5.40100 5.51801 5.53574 5.65380 5.66336 5.89071 6.02630 6.13298 6.19217 6.41964 6.59007 6.84441 7.20653 7.48652 8.95685 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036972 B = 0.002286 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.141650 B =12247.569012 C =12601.960246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.544 3.456 15 O -0.591 6.591 16 C -0.145 4.145 17 C -0.090 4.090 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.081 4.081 21 C -0.083 4.083 22 H 0.091 0.909 23 C -0.143 4.143 24 C 0.046 3.954 25 O -0.407 6.407 26 C 0.059 3.941 27 C -0.070 4.070 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.408 0.592 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 6.621 24.011 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.354 5.354 14 C 0.332 3.668 15 O -0.474 6.474 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.101 4.101 22 H 0.109 0.891 23 C -0.180 4.180 24 C -0.030 4.030 25 O -0.327 6.327 26 C -0.017 4.017 27 C -0.089 4.089 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.155 0.845 39 H 0.180 0.820 40 H 0.173 0.827 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.702 5.953 24.067 24.939 hybrid contribution 0.488 -0.489 -1.660 1.798 sum -2.214 5.463 22.407 23.170 Atomic orbital electron populations 1.21686 0.97028 0.98741 1.00487 1.18361 0.93330 0.93085 0.90145 1.21683 0.97984 0.97778 1.00487 1.21222 1.31858 1.12218 0.91533 0.93777 1.25448 0.95141 0.95619 1.00932 1.69889 1.36817 1.23214 1.23723 0.85817 0.78601 0.78802 0.79581 1.20320 1.20734 1.20313 1.21334 0.97134 0.95168 0.84081 1.46055 1.52391 1.31816 1.05155 1.18899 0.79799 0.83721 0.84339 1.90703 1.40631 1.28462 1.87569 1.19877 1.03426 0.98901 0.92605 1.21580 0.95107 0.93321 1.00862 1.21444 0.99903 1.00725 0.91176 1.21515 0.95335 0.94564 0.98744 1.19529 0.98804 0.96408 0.93352 1.21803 0.97927 0.99316 0.91073 0.89081 1.23267 1.02908 0.98738 0.93136 1.23295 0.88848 0.93701 0.97187 1.88390 1.50385 1.67544 1.26427 1.23545 0.95758 1.02556 0.79879 1.21142 0.97868 0.99011 0.90892 0.94471 0.91631 0.96314 0.96294 0.91643 0.94459 0.92954 0.94192 0.94220 0.75317 0.84526 0.81988 0.82664 0.88798 0.88999 0.89899 0.90713 0.89637 0.90578 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.04 8.01 25.60 0.21 -27.83 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.50 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.47 9.35 21.45 0.20 -47.27 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.35 4.50 86.38 0.39 6.74 16 13 N -0.70 -25.13 4.91 -465.98 -2.29 -27.42 16 14 C 0.54 19.71 7.77 86.79 0.67 20.38 16 15 O -0.59 -26.05 16.35 -3.87 -0.06 -26.11 16 16 C -0.15 -4.00 5.87 -20.09 -0.12 -4.11 16 17 C -0.09 -1.87 9.54 22.53 0.21 -1.66 16 18 C -0.11 -1.68 10.03 22.23 0.22 -1.46 16 19 C -0.08 -1.14 8.27 22.33 0.18 -0.96 16 20 C -0.08 -1.42 5.01 -19.90 -0.10 -1.52 16 21 C -0.08 -1.21 3.31 -10.08 -0.03 -1.24 16 22 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 23 C -0.14 -1.54 6.43 31.86 0.20 -1.34 16 24 C 0.05 0.54 7.79 72.45 0.56 1.11 16 25 O -0.41 -7.20 11.36 -148.98 -1.69 -8.89 16 26 C 0.06 0.87 7.21 72.65 0.52 1.39 16 27 C -0.07 -1.73 9.23 22.53 0.21 -1.53 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 29 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 33 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 34 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 12.52 4.20 -92.71 -0.39 12.13 16 38 H 0.14 2.54 6.41 -2.91 -0.02 2.53 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.16 1.21 6.99 -2.91 -0.02 1.19 16 41 H 0.09 0.79 6.75 -2.39 -0.02 0.77 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 0.94 7.05 -2.39 -0.02 0.92 16 47 H 0.12 3.25 7.58 -2.91 -0.02 3.23 16 Total: -1.00 -64.62 369.66 3.48 -61.14 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.58 Total: 21.28 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.71 Total: -17.30 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.09 Total: -74.68 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.76 Total: -35.00 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.62 3.48 -61.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.833 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds