Wall clock time and date at job start Tue Mar 31 2020 12:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 C 1.50696 * 109.47004 * 240.00110 * 2 1 3 5 5 H 1.07998 * 120.00172 * 239.99857 * 4 2 1 6 6 C 1.37884 * 120.00097 * 59.99741 * 4 2 1 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46952 * 90.00100 * 8 6 4 10 10 H 1.48502 * 109.47366 * 210.00051 * 8 6 4 11 11 H 1.48499 * 109.47124 * 330.00018 * 8 6 4 12 12 C 1.52996 * 109.47031 * 120.00119 * 2 1 3 13 13 N 1.46502 * 109.47064 * 299.99959 * 12 2 1 14 14 C 1.34779 * 120.00008 * 180.02562 * 13 12 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.47840 * 119.99962 * 179.97438 * 14 13 12 17 17 C 1.39600 * 120.14716 * 0.02562 * 16 14 13 18 18 C 1.37936 * 119.85389 * 179.97438 * 17 16 14 19 19 C 1.38378 * 120.14466 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29499 * 359.71598 * 19 18 17 21 21 C 1.50693 * 119.92989 * 180.28108 * 20 19 18 22 22 H 1.08999 * 110.80470 * 183.90560 * 21 20 19 23 23 C 1.54809 * 110.90901 * 60.27712 * 21 20 19 24 24 C 1.54092 * 104.19177 * 220.92430 * 23 21 20 25 25 O 1.43741 * 107.29405 * 357.96603 * 24 23 21 26 26 C 1.44384 * 106.97536 * 26.51739 * 25 24 23 27 27 C 1.37977 * 120.14117 * 0.56443 * 20 19 18 28 28 H 1.08993 * 109.47261 * 299.99606 * 1 2 3 29 29 H 1.09004 * 109.46957 * 60.00275 * 1 2 3 30 30 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47483 * 300.00311 * 3 2 1 33 33 H 1.08998 * 109.47098 * 59.99730 * 3 2 1 34 34 H 0.96992 * 120.00063 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46715 * 180.02562 * 12 2 1 36 36 H 1.08991 * 109.47434 * 60.00168 * 12 2 1 37 37 H 0.96996 * 119.99823 * 0.02562 * 13 12 2 38 38 H 1.08006 * 120.06877 * 359.97438 * 17 16 14 39 39 H 1.07996 * 119.92236 * 180.02562 * 18 17 16 40 40 H 1.08003 * 119.84872 * 180.02562 * 19 18 17 41 41 H 1.09003 * 110.48745 * 339.59790 * 23 21 20 42 42 H 1.09000 * 110.48928 * 102.24116 * 23 21 20 43 43 H 1.09001 * 109.88333 * 117.39265 * 24 23 21 44 44 H 1.09005 * 109.87916 * 238.39597 * 24 23 21 45 45 H 1.08996 * 110.61966 * 201.43748 * 26 25 24 46 46 H 1.09003 * 110.61706 * 78.43368 * 26 25 24 47 47 H 1.08002 * 120.07529 * 179.72187 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5772 -1.4786 3.7810 16 6 1.3853 0.2064 4.8766 17 6 0.5821 1.3414 4.7521 18 6 0.1257 1.9869 5.8824 19 6 0.4627 1.5121 7.1377 20 6 1.2539 0.3848 7.2682 21 6 1.6106 -0.1288 8.6392 22 1 2.2914 -0.9773 8.5698 23 6 0.3382 -0.5053 9.4365 24 6 0.6203 0.0070 10.8622 25 8 1.9448 0.5655 10.8612 26 6 2.2185 0.9991 9.5115 27 6 1.7218 -0.2669 6.1456 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.7095 1.1618 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.3188 1.7132 3.7728 39 1 -0.4961 2.8648 5.7873 40 1 0.1023 2.0210 8.0195 41 1 -0.5359 -0.0064 9.0179 42 1 0.1963 -1.5860 9.4406 43 1 -0.1055 0.7747 11.1306 44 1 0.5646 -0.8194 11.5708 45 1 3.2926 1.0773 9.3439 46 1 1.7267 1.9500 9.3066 47 1 2.3431 -1.1443 6.2488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:40 Heat of formation + Delta-G solvation = -69.740324 kcal Electronic energy + Delta-G solvation = -26107.798673 eV Core-core repulsion = 22447.854786 eV Total energy + Delta-G solvation = -3659.943887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53528 -39.53162 -38.12580 -36.35865 -33.92769 -33.20679 -31.36575 -30.88400 -30.37233 -28.64442 -25.83504 -25.76462 -25.16857 -24.00020 -22.89858 -22.50917 -21.37546 -19.68312 -18.87923 -17.81678 -16.87842 -16.40085 -16.02322 -15.76007 -15.69809 -15.19265 -14.81497 -14.76591 -14.54790 -14.13750 -13.80127 -13.48942 -13.24749 -13.19474 -12.92528 -12.68795 -12.47261 -12.19950 -11.91108 -11.70169 -11.62314 -11.40825 -11.28014 -11.21438 -10.96160 -10.89207 -10.71728 -10.42358 -10.22975 -10.06761 -9.68656 -9.67275 -9.30540 -9.09636 -8.93594 -8.82428 -8.48106 -8.34076 -6.04665 -4.14674 0.78042 1.16375 2.97859 3.26859 3.33921 3.37584 3.53935 3.64480 3.84267 4.25024 4.32476 4.38493 4.55775 4.67636 4.69325 4.75024 4.85809 4.90117 5.08522 5.13528 5.22217 5.30003 5.36662 5.41603 5.42465 5.58561 5.64419 5.70414 5.82845 6.15355 6.20458 6.24474 6.28956 6.33067 6.46625 6.47615 6.70158 6.73448 6.77846 6.90213 6.96882 6.98202 7.31592 7.51993 7.66787 7.97456 7.98701 8.11548 8.35241 8.61481 8.85921 9.51215 10.96850 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.981794 B =12231.479817 C =12581.080332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.081 4.081 22 H 0.096 0.904 23 C -0.150 4.150 24 C 0.046 3.954 25 O -0.379 6.379 26 C 0.054 3.946 27 C -0.057 4.057 28 H 0.005 0.995 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 3.638 22.173 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.123 4.123 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.099 4.099 22 H 0.115 0.885 23 C -0.187 4.187 24 C -0.031 4.031 25 O -0.297 6.297 26 C -0.023 4.023 27 C -0.076 4.076 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.236 3.061 22.234 22.675 hybrid contribution -0.205 -0.066 -1.206 1.225 sum -3.441 2.994 21.027 21.517 Atomic orbital electron populations 1.21843 0.97752 0.99252 1.00059 1.18366 0.92807 0.92791 0.90562 1.21839 0.98687 0.98318 1.00062 1.20973 1.31499 1.12105 0.89828 0.92396 1.24884 0.94867 0.94918 0.98878 1.69795 1.36714 1.22694 1.23257 0.86561 0.79335 0.79376 0.82539 1.20705 1.21261 1.19896 1.21774 0.98292 0.95865 0.83205 1.46268 1.52141 1.31640 1.05910 1.18270 0.80850 0.84278 0.83507 1.90737 1.38638 1.26490 1.86949 1.20154 1.00783 0.97246 0.94165 1.21434 0.95654 0.94159 0.99372 1.21068 1.00569 1.00372 0.92025 1.21114 0.97295 0.95654 0.97593 1.19491 0.99160 0.96291 0.93824 1.21696 0.97507 0.99151 0.91595 0.88518 1.23078 0.98099 1.02809 0.94730 1.23180 0.84910 0.97921 0.97078 1.88883 1.32330 1.80135 1.28393 1.23715 1.01654 0.96136 0.80761 1.21161 0.97175 0.98898 0.90319 0.97613 0.89499 0.95365 0.95344 0.89505 0.97602 0.92985 0.92490 0.92504 0.76618 0.85332 0.85303 0.85873 0.90109 0.90024 0.92327 0.89772 0.88540 0.91641 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.71 -12.73 4.91 -61.26 -0.30 -13.03 16 14 C 0.54 9.74 7.77 -12.33 -0.10 9.64 16 15 O -0.55 -11.61 16.35 5.32 0.09 -11.52 16 16 C -0.12 -1.70 5.87 -104.97 -0.62 -2.32 16 17 C -0.09 -1.02 9.54 -39.18 -0.37 -1.39 16 18 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 19 C -0.10 -0.87 8.20 -39.49 -0.32 -1.19 16 20 C -0.09 -0.87 4.94 -104.68 -0.52 -1.38 16 21 C -0.08 -0.67 3.34 -89.77 -0.30 -0.97 16 22 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 23 C -0.15 -1.05 6.50 -25.21 -0.16 -1.21 16 24 C 0.05 0.32 7.70 37.73 0.29 0.61 16 25 O -0.38 -3.65 11.52 -35.23 -0.41 -4.06 16 26 C 0.05 0.44 7.10 38.21 0.27 0.71 16 27 C -0.06 -0.71 9.23 -39.18 -0.36 -1.08 16 28 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.40 6.38 4.20 -40.82 -0.17 6.21 16 38 H 0.13 1.38 6.41 -52.48 -0.34 1.05 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.82 7.22 -52.48 -0.38 0.44 16 41 H 0.08 0.53 7.22 -51.93 -0.38 0.16 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.48 6.67 -51.93 -0.35 0.13 16 47 H 0.14 1.76 7.57 -52.49 -0.40 1.36 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -29.29 369.90 -9.11 -38.40 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.11 Total: 5.09 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.45 Total: -13.20 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.22 Total: -35.87 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.32 Total: -15.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.29 -9.11 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.337 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds