Wall clock time and date at job start Tue Mar 31 2020 12:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 C 1.50696 * 109.47004 * 240.00110 * 2 1 3 5 5 H 1.07998 * 120.00172 * 239.99857 * 4 2 1 6 6 C 1.37884 * 120.00097 * 59.99741 * 4 2 1 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46952 * 90.00100 * 8 6 4 10 10 H 1.48502 * 109.47366 * 210.00051 * 8 6 4 11 11 H 1.48499 * 109.47124 * 330.00018 * 8 6 4 12 12 C 1.52996 * 109.47031 * 120.00119 * 2 1 3 13 13 N 1.46502 * 109.47064 * 299.99959 * 12 2 1 14 14 C 1.34779 * 120.00008 * 180.02562 * 13 12 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.47840 * 119.99962 * 179.97438 * 14 13 12 17 17 C 1.39600 * 120.14716 * 0.02562 * 16 14 13 18 18 C 1.37936 * 119.85389 * 179.97438 * 17 16 14 19 19 C 1.38378 * 120.14466 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29499 * 359.71598 * 19 18 17 21 21 C 1.50693 * 119.92989 * 180.28108 * 20 19 18 22 22 H 1.08999 * 110.80470 * 183.90560 * 21 20 19 23 23 C 1.54809 * 110.90901 * 60.27712 * 21 20 19 24 24 C 1.54092 * 104.19177 * 220.92430 * 23 21 20 25 25 O 1.43741 * 107.29405 * 357.96603 * 24 23 21 26 26 C 1.44384 * 106.97536 * 26.51739 * 25 24 23 27 27 C 1.37977 * 120.14117 * 0.56443 * 20 19 18 28 28 H 1.08993 * 109.47261 * 299.99606 * 1 2 3 29 29 H 1.09004 * 109.46957 * 60.00275 * 1 2 3 30 30 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47483 * 300.00311 * 3 2 1 33 33 H 1.08998 * 109.47098 * 59.99730 * 3 2 1 34 34 H 0.96992 * 120.00063 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46715 * 180.02562 * 12 2 1 36 36 H 1.08991 * 109.47434 * 60.00168 * 12 2 1 37 37 H 0.96996 * 119.99823 * 0.02562 * 13 12 2 38 38 H 1.08006 * 120.06877 * 359.97438 * 17 16 14 39 39 H 1.07996 * 119.92236 * 180.02562 * 18 17 16 40 40 H 1.08003 * 119.84872 * 180.02562 * 19 18 17 41 41 H 1.09003 * 110.48745 * 339.59790 * 23 21 20 42 42 H 1.09000 * 110.48928 * 102.24116 * 23 21 20 43 43 H 1.09001 * 109.88333 * 117.39265 * 24 23 21 44 44 H 1.09005 * 109.87916 * 238.39597 * 24 23 21 45 45 H 1.08996 * 110.61966 * 201.43748 * 26 25 24 46 46 H 1.09003 * 110.61706 * 78.43368 * 26 25 24 47 47 H 1.08002 * 120.07529 * 179.72187 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5772 -1.4786 3.7810 16 6 1.3853 0.2064 4.8766 17 6 0.5821 1.3414 4.7521 18 6 0.1257 1.9869 5.8824 19 6 0.4627 1.5121 7.1377 20 6 1.2539 0.3848 7.2682 21 6 1.6106 -0.1288 8.6392 22 1 2.2914 -0.9773 8.5698 23 6 0.3382 -0.5053 9.4365 24 6 0.6203 0.0070 10.8622 25 8 1.9448 0.5655 10.8612 26 6 2.2185 0.9991 9.5115 27 6 1.7218 -0.2669 6.1456 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.7095 1.1618 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.3188 1.7132 3.7728 39 1 -0.4961 2.8648 5.7873 40 1 0.1023 2.0210 8.0195 41 1 -0.5359 -0.0064 9.0179 42 1 0.1963 -1.5860 9.4406 43 1 -0.1055 0.7747 11.1306 44 1 0.5646 -0.8194 11.5708 45 1 3.2926 1.0773 9.3439 46 1 1.7267 1.9500 9.3066 47 1 2.3431 -1.1443 6.2488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457996787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:39 Heat of formation + Delta-G solvation = -85.881940 kcal Electronic energy + Delta-G solvation = -26108.498626 eV Core-core repulsion = 22447.854786 eV Total energy + Delta-G solvation = -3660.643840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47331 -40.58208 -39.12719 -38.07856 -35.20942 -34.41494 -32.83853 -32.01439 -31.15361 -29.37215 -27.58473 -27.53384 -26.94477 -24.95948 -23.77314 -23.21560 -22.30390 -20.85446 -20.64461 -18.88936 -17.89635 -17.55763 -17.24132 -16.85493 -16.68994 -16.47009 -16.32562 -16.04007 -15.53473 -15.14756 -14.84453 -14.68288 -14.67374 -14.40387 -14.10033 -13.88077 -13.79416 -13.21952 -13.14972 -13.10771 -12.70950 -12.63165 -12.61206 -12.40600 -12.29702 -12.25020 -12.14520 -12.00701 -11.58152 -11.51061 -11.33473 -10.96601 -10.71815 -10.64832 -10.41387 -10.14798 -9.86495 -9.71079 -8.03517 -6.19019 -0.16459 0.33608 1.41911 1.44888 1.53004 1.83651 2.22390 2.47697 2.79759 2.99319 3.20104 3.58004 3.63934 3.75698 3.93145 3.98767 4.09143 4.17228 4.22045 4.31045 4.34356 4.39661 4.47525 4.56144 4.67270 4.75036 4.82779 4.87447 4.90922 4.95685 4.99929 5.02788 5.05174 5.09318 5.13760 5.16932 5.30957 5.34984 5.40315 5.51913 5.53501 5.65238 5.66354 5.88293 5.92276 6.13143 6.19076 6.41860 6.58984 6.84420 7.20635 7.48500 8.95551 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.981794 B =12231.479817 C =12581.080332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.543 3.457 15 O -0.591 6.591 16 C -0.145 4.145 17 C -0.091 4.091 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.081 4.081 21 C -0.082 4.082 22 H 0.087 0.913 23 C -0.145 4.145 24 C 0.043 3.957 25 O -0.401 6.401 26 C 0.054 3.946 27 C -0.071 4.071 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.408 0.592 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 5.434 24.049 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.354 5.354 14 C 0.332 3.668 15 O -0.474 6.474 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.101 4.101 22 H 0.105 0.895 23 C -0.183 4.183 24 C -0.034 4.034 25 O -0.321 6.321 26 C -0.022 4.022 27 C -0.090 4.090 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.155 0.845 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.814 4.879 24.118 25.073 hybrid contribution 0.266 -0.611 -1.682 1.809 sum -4.549 4.267 22.436 23.287 Atomic orbital electron populations 1.21687 0.97012 0.98750 1.00490 1.18363 0.93341 0.93085 0.90144 1.21684 0.97990 0.97778 1.00490 1.21248 1.31776 1.12175 0.91529 0.93798 1.25447 0.95160 0.95606 1.00934 1.69891 1.36953 1.23156 1.23659 0.85757 0.78619 0.78503 0.79907 1.20486 1.20740 1.20198 1.21335 0.97117 0.95177 0.84090 1.46055 1.52379 1.31829 1.05150 1.18904 0.79797 0.83723 0.84349 1.90704 1.40597 1.28517 1.87573 1.19877 1.03409 0.98918 0.92588 1.21581 0.95157 0.93329 1.00872 1.21444 0.99854 1.00734 0.91173 1.21511 0.95457 0.94502 0.98747 1.19599 0.98693 0.96353 0.93463 1.21682 0.98261 0.99124 0.91004 0.89461 1.23072 0.97540 1.03147 0.94507 1.23330 0.84196 0.98651 0.97179 1.88863 1.33730 1.80484 1.29024 1.23766 1.01853 0.96411 0.80176 1.21144 0.97847 0.99094 0.90930 0.94462 0.91632 0.96298 0.96295 0.91636 0.94458 0.92960 0.94231 0.94198 0.75314 0.84538 0.81969 0.82622 0.89084 0.89850 0.90781 0.89058 0.88689 0.90189 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.01 8.01 25.60 0.21 -27.80 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.49 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.47 9.35 21.45 0.20 -47.27 16 8 Si 0.95 42.58 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.37 4.50 86.38 0.39 6.75 16 13 N -0.70 -25.19 4.91 -465.99 -2.29 -27.48 16 14 C 0.54 19.78 7.77 86.78 0.67 20.45 16 15 O -0.59 -26.17 16.35 -3.87 -0.06 -26.24 16 16 C -0.14 -4.01 5.87 -20.09 -0.12 -4.13 16 17 C -0.09 -1.89 9.54 22.53 0.21 -1.67 16 18 C -0.11 -1.67 10.03 22.23 0.22 -1.45 16 19 C -0.08 -1.14 8.20 22.33 0.18 -0.96 16 20 C -0.08 -1.43 4.94 -19.90 -0.10 -1.53 16 21 C -0.08 -1.22 3.34 -10.24 -0.03 -1.26 16 22 H 0.09 1.46 7.95 -2.39 -0.02 1.44 16 23 C -0.15 -1.66 6.50 31.58 0.21 -1.46 16 24 C 0.04 0.49 7.70 72.35 0.56 1.05 16 25 O -0.40 -6.94 11.52 -148.98 -1.72 -8.66 16 26 C 0.05 0.76 7.10 72.67 0.52 1.28 16 27 C -0.07 -1.77 9.23 22.53 0.21 -1.57 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 29 H 0.06 3.20 6.07 -2.38 -0.01 3.18 16 30 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 33 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.41 12.54 4.20 -92.71 -0.39 12.15 16 38 H 0.14 2.55 6.41 -2.91 -0.02 2.53 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.16 1.17 7.22 -2.91 -0.02 1.15 16 41 H 0.09 0.86 7.22 -2.39 -0.02 0.85 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 0.88 6.67 -2.39 -0.02 0.86 16 47 H 0.12 3.27 7.57 -2.91 -0.02 3.25 16 Total: -1.00 -64.84 369.90 3.44 -61.40 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.58 Total: 21.22 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.70 Total: -17.58 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -2.09 Total: -74.75 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.78 Total: -34.89 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -64.84 3.44 -61.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.480 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds