Wall clock time and date at job start Tue Mar 31 2020 12:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46792 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46980 * 119.99883 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.34115 * 305.32104 * 17 16 14 19 19 O 1.42727 * 109.34134 * 64.99678 * 17 16 14 20 20 C 1.43218 * 113.12210 * 172.01192 * 19 17 16 21 21 C 1.52971 * 108.47779 * 289.28782 * 20 19 17 22 22 C 1.50744 * 109.76452 * 49.16217 * 21 20 19 23 23 C 1.38599 * 118.76190 * 163.19498 * 22 21 20 24 24 C 1.38072 * 120.27473 * 179.79597 * 23 22 21 25 25 C 1.38255 * 119.86435 * 359.97438 * 24 23 22 26 26 C 1.38059 * 119.89503 * 0.09483 * 25 24 23 27 27 C 1.37899 * 121.35580 * 343.13654 * 22 21 20 28 28 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 30 30 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 33 33 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 34 34 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 37 37 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 39 39 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 40 40 H 1.08998 * 109.63712 * 48.98661 * 20 19 17 41 41 H 1.09000 * 109.63555 * 169.38914 * 20 19 17 42 42 H 1.09000 * 109.41932 * 169.24914 * 21 20 19 43 43 H 1.08996 * 109.42406 * 289.12859 * 21 20 19 44 44 H 1.08002 * 119.86319 * 359.79356 * 23 22 21 45 45 H 1.08001 * 120.06277 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.05191 * 180.11761 * 25 24 23 47 47 H 1.07999 * 119.84621 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 3.1472 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8162 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 1 1.6009 -1.5531 6.1005 19 8 3.3074 -0.3990 6.2067 20 6 3.8574 -0.8877 7.4354 21 6 3.4903 0.0894 8.5536 22 6 2.0154 0.3962 8.4986 23 6 1.4109 0.9661 9.6080 24 6 0.0628 1.2639 9.5901 25 6 -0.6872 0.9930 8.4607 26 6 -0.0861 0.4239 7.3557 27 6 1.2670 0.1225 7.3731 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7086 1.1613 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.7375 1.2472 4.8999 39 1 0.2849 0.2185 4.9000 40 1 3.4422 -1.8709 7.6571 41 1 4.9416 -0.9591 7.3486 42 1 3.7320 -0.3565 9.5184 43 1 4.0565 1.0124 8.4288 44 1 1.9968 1.1782 10.4901 45 1 -0.4046 1.7084 10.4563 46 1 -1.7415 1.2264 8.4427 47 1 -0.6727 0.2122 6.4740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457997659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:56 Heat of formation + Delta-G solvation = -69.711310 kcal Electronic energy + Delta-G solvation = -26556.005458 eV Core-core repulsion = 22896.062829 eV Total energy + Delta-G solvation = -3659.942629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66892 -39.07307 -37.58205 -36.29264 -33.84842 -33.20014 -32.37505 -30.91376 -30.08532 -28.61584 -25.70112 -25.67548 -25.08727 -24.10503 -23.75880 -21.97575 -20.22992 -19.87153 -18.73534 -17.58533 -16.79854 -16.46626 -15.98413 -15.65821 -15.48744 -15.11523 -14.71892 -14.59865 -14.40365 -14.07215 -13.77125 -13.35592 -13.21421 -12.99895 -12.88572 -12.54510 -12.38754 -12.16440 -12.13225 -11.89722 -11.51460 -11.30374 -11.17899 -11.10589 -10.84876 -10.74320 -10.64181 -10.35769 -10.18349 -9.68280 -9.60519 -9.47901 -9.20172 -8.98667 -8.81719 -8.74187 -8.41474 -8.24304 -6.00351 -4.10105 1.07161 1.11775 3.15765 3.28378 3.36901 3.41559 3.44666 3.72938 3.78874 4.40612 4.41204 4.48586 4.59099 4.69655 4.86311 4.92883 5.05248 5.15590 5.20539 5.21349 5.26450 5.31764 5.43997 5.51660 5.62341 5.69960 5.75209 5.82961 5.86997 6.19588 6.25808 6.28122 6.35447 6.37969 6.54460 6.73365 6.83196 6.85323 6.97168 7.05104 7.10617 7.13310 7.38953 7.58282 7.71726 8.03560 8.11602 8.20648 8.41396 8.80658 8.91528 9.55670 11.01100 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002553 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.584786 B =10965.007922 C =11608.215513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.133 3.867 13 N -0.720 5.720 14 C 0.506 3.494 15 O -0.541 6.541 16 C -0.135 4.135 17 C 0.149 3.851 18 H 0.080 0.920 19 O -0.353 6.353 20 C 0.060 3.940 21 C -0.117 4.117 22 C -0.071 4.071 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.110 4.110 27 C -0.111 4.111 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.397 0.603 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 2.327 23.735 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.371 5.371 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.175 4.175 17 C 0.091 3.909 18 H 0.097 0.903 19 O -0.272 6.272 20 C -0.017 4.017 21 C -0.154 4.154 22 C -0.071 4.071 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.112 4.112 28 H 0.025 0.975 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.231 0.769 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.377 1.795 23.482 23.591 hybrid contribution -0.205 -0.015 -0.596 0.631 sum -1.582 1.780 22.886 23.010 Atomic orbital electron populations 1.21829 0.97812 0.99122 1.00055 1.18355 0.92756 0.92765 0.90651 1.21826 0.98611 0.98365 1.00048 1.21041 1.31274 1.12033 0.89915 0.92409 1.24885 0.94895 0.94941 0.98850 1.69814 1.36813 1.22830 1.23073 0.86525 0.78634 0.79768 0.83020 1.19760 1.21088 1.21071 1.21673 0.98122 0.95664 0.83473 1.46298 1.52894 1.31873 1.06030 1.20304 0.80964 0.84975 0.84646 1.90680 1.37809 1.26574 1.86792 1.21811 1.02123 1.01553 0.92011 1.20518 0.81637 0.98553 0.90211 0.90277 1.88200 1.18621 1.84105 1.36228 1.22572 0.99544 0.95693 0.83942 1.21176 0.92471 1.01412 1.00317 1.19529 0.95551 0.98713 0.93323 1.21063 0.95091 0.99752 0.97900 1.21112 0.94155 1.00148 0.98325 1.21111 0.99972 0.99517 0.93414 1.21129 0.93958 0.98907 0.98830 1.20304 0.94508 1.00376 0.95992 0.97496 0.89628 0.95484 0.95449 0.89647 0.97470 0.93098 0.92826 0.92880 0.76859 0.88149 0.87674 0.92743 0.88304 0.89868 0.89649 0.86080 0.86066 0.85858 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.13 2.88 4.50 -4.04 -0.02 2.86 16 13 N -0.72 -12.91 4.96 -60.30 -0.30 -13.21 16 14 C 0.51 8.84 7.71 -10.98 -0.08 8.75 16 15 O -0.54 -11.48 15.41 -8.98 -0.14 -11.62 16 16 C -0.14 -1.74 5.11 -27.88 -0.14 -1.88 16 17 C 0.15 1.96 2.28 -27.90 -0.06 1.90 16 18 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 19 O -0.35 -5.19 9.66 -49.77 -0.48 -5.67 16 20 C 0.06 0.64 6.85 37.14 0.25 0.90 16 21 C -0.12 -1.05 6.00 -27.88 -0.17 -1.22 16 22 C -0.07 -0.74 5.78 -104.59 -0.60 -1.35 16 23 C -0.12 -1.07 9.67 -39.51 -0.38 -1.45 16 24 C -0.12 -1.00 10.05 -39.64 -0.40 -1.40 16 25 C -0.12 -1.06 10.05 -39.64 -0.40 -1.46 16 26 C -0.11 -1.09 9.08 -39.50 -0.36 -1.44 16 27 C -0.11 -1.26 5.46 -104.62 -0.57 -1.83 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 33 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.11 1.06 6.29 -51.93 -0.33 0.73 16 40 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.13 1.06 6.45 -52.49 -0.34 0.72 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -30.67 368.73 -9.93 -40.60 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.28 Total: 5.41 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.78 Total: -13.68 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.22 Total: -36.43 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.62 Total: -17.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.67 -9.93 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.114 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds