Wall clock time and date at job start Tue Mar 31 2020 12:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46792 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46980 * 119.99883 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.34115 * 305.32104 * 17 16 14 19 19 O 1.42727 * 109.34134 * 64.99678 * 17 16 14 20 20 C 1.43218 * 113.12210 * 172.01192 * 19 17 16 21 21 C 1.52971 * 108.47779 * 289.28782 * 20 19 17 22 22 C 1.50744 * 109.76452 * 49.16217 * 21 20 19 23 23 C 1.38599 * 118.76190 * 163.19498 * 22 21 20 24 24 C 1.38072 * 120.27473 * 179.79597 * 23 22 21 25 25 C 1.38255 * 119.86435 * 359.97438 * 24 23 22 26 26 C 1.38059 * 119.89503 * 0.09483 * 25 24 23 27 27 C 1.37899 * 121.35580 * 343.13654 * 22 21 20 28 28 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 30 30 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 33 33 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 34 34 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 37 37 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 39 39 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 40 40 H 1.08998 * 109.63712 * 48.98661 * 20 19 17 41 41 H 1.09000 * 109.63555 * 169.38914 * 20 19 17 42 42 H 1.09000 * 109.41932 * 169.24914 * 21 20 19 43 43 H 1.08996 * 109.42406 * 289.12859 * 21 20 19 44 44 H 1.08002 * 119.86319 * 359.79356 * 23 22 21 45 45 H 1.08001 * 120.06277 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.05191 * 180.11761 * 25 24 23 47 47 H 1.07999 * 119.84621 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 3.1472 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8162 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 1 1.6009 -1.5531 6.1005 19 8 3.3074 -0.3990 6.2067 20 6 3.8574 -0.8877 7.4354 21 6 3.4903 0.0894 8.5536 22 6 2.0154 0.3962 8.4986 23 6 1.4109 0.9661 9.6080 24 6 0.0628 1.2639 9.5901 25 6 -0.6872 0.9930 8.4607 26 6 -0.0861 0.4239 7.3557 27 6 1.2670 0.1225 7.3731 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7086 1.1613 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.7375 1.2472 4.8999 39 1 0.2849 0.2185 4.9000 40 1 3.4422 -1.8709 7.6571 41 1 4.9416 -0.9591 7.3486 42 1 3.7320 -0.3565 9.5184 43 1 4.0565 1.0124 8.4288 44 1 1.9968 1.1782 10.4901 45 1 -0.4046 1.7084 10.4563 46 1 -1.7415 1.2264 8.4427 47 1 -0.6727 0.2122 6.4740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457997659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:55 Heat of formation + Delta-G solvation = -86.218259 kcal Electronic energy + Delta-G solvation = -26556.721254 eV Core-core repulsion = 22896.062829 eV Total energy + Delta-G solvation = -3660.658424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54868 -40.44346 -38.49732 -38.00211 -34.94826 -34.72146 -33.21763 -32.67883 -30.92075 -29.54902 -27.55128 -27.44776 -26.76467 -25.06682 -24.64773 -22.84725 -21.27776 -20.97564 -20.57134 -18.62968 -18.02186 -17.65301 -17.34550 -16.86695 -16.61712 -16.37666 -16.23314 -15.95508 -15.30288 -15.08112 -14.81874 -14.71548 -14.49468 -14.33377 -14.07986 -13.96289 -13.45233 -13.35523 -13.15635 -13.08797 -13.00800 -12.69365 -12.61197 -12.56638 -12.36386 -12.23086 -12.13791 -11.85289 -11.53445 -11.47378 -11.25309 -10.82650 -10.66897 -10.53051 -10.39662 -9.88469 -9.68803 -9.52898 -8.02323 -6.17878 0.37394 0.45887 1.40785 1.44860 1.54436 1.77146 2.33313 2.50455 2.74785 2.88852 3.21075 3.58041 3.67541 3.83759 3.91997 4.04624 4.15289 4.24985 4.31123 4.32691 4.44236 4.47855 4.53542 4.61737 4.64549 4.69583 4.73729 4.83423 4.90314 4.98002 5.02233 5.07270 5.09799 5.13464 5.18646 5.20879 5.39467 5.53220 5.61831 5.63616 5.64937 5.67647 5.68368 6.09336 6.16345 6.22250 6.22876 6.44423 6.73476 6.86557 7.40364 7.49807 8.96740 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002553 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.584786 B =10965.007922 C =11608.215513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.150 3.850 13 N -0.713 5.713 14 C 0.504 3.496 15 O -0.582 6.582 16 C -0.124 4.124 17 C 0.150 3.850 18 H 0.059 0.941 19 O -0.386 6.386 20 C 0.051 3.949 21 C -0.110 4.110 22 C -0.088 4.088 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.130 4.130 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.260 0.740 35 H 0.032 0.968 36 H 0.036 0.964 37 H 0.409 0.591 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 3.581 25.797 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.026 3.974 13 N -0.365 5.365 14 C 0.292 3.708 15 O -0.462 6.462 16 C -0.163 4.163 17 C 0.092 3.908 18 H 0.077 0.923 19 O -0.305 6.305 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.088 4.088 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.131 4.131 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.246 0.754 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.521 3.073 25.559 25.866 hybrid contribution 0.153 -0.421 -1.175 1.257 sum -2.368 2.652 24.384 24.642 Atomic orbital electron populations 1.21670 0.96929 0.98712 1.00522 1.18350 0.93390 0.92936 0.90241 1.21676 0.97813 0.97948 1.00461 1.21312 1.31593 1.12089 0.91697 0.93963 1.25448 0.95162 0.95617 1.00933 1.69910 1.37033 1.23294 1.23541 0.85715 0.78159 0.78712 0.80270 1.20144 1.20596 1.20689 1.21209 0.96699 0.95034 0.84497 1.46129 1.53068 1.32065 1.05263 1.21110 0.79850 0.84396 0.85444 1.90663 1.39605 1.28604 1.87375 1.21844 1.03961 1.01238 0.89249 1.20444 0.81279 0.97744 0.91334 0.92302 1.88137 1.19622 1.84487 1.38291 1.22780 0.99976 0.96157 0.83603 1.21144 0.92014 1.01027 1.00488 1.19776 0.96154 0.99211 0.93677 1.21341 0.95708 0.99177 0.98040 1.21494 0.94027 0.99229 0.99025 1.21431 1.01163 0.98813 0.93049 1.21322 0.93472 0.99025 0.99909 1.20202 0.95347 1.01931 0.95594 0.94167 0.91890 0.96287 0.96551 0.91834 0.94318 0.93016 0.94954 0.94519 0.75401 0.86823 0.84407 0.93023 0.87404 0.87534 0.89432 0.83990 0.83580 0.83682 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.47 8.08 71.98 0.58 -4.88 16 4 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 8 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.15 6.55 4.50 86.38 0.39 6.94 16 13 N -0.71 -24.97 4.96 -463.06 -2.30 -27.27 16 14 C 0.50 17.44 7.71 87.66 0.68 18.12 16 15 O -0.58 -25.32 15.41 10.87 0.17 -25.15 16 16 C -0.12 -3.01 5.11 29.85 0.15 -2.86 16 17 C 0.15 3.91 2.28 29.83 0.07 3.98 16 18 H 0.06 1.71 7.94 -2.38 -0.02 1.69 16 19 O -0.39 -11.47 9.66 -135.08 -1.30 -12.77 16 20 C 0.05 1.10 6.85 71.97 0.49 1.60 16 21 C -0.11 -1.82 6.00 29.85 0.18 -1.64 16 22 C -0.09 -1.69 5.78 -19.84 -0.11 -1.80 16 23 C -0.12 -1.88 9.67 22.32 0.22 -1.66 16 24 C -0.12 -1.61 10.05 22.23 0.22 -1.39 16 25 C -0.13 -1.82 10.05 22.23 0.22 -1.60 16 26 C -0.12 -2.09 9.08 22.32 0.20 -1.88 16 27 C -0.13 -2.78 5.46 -19.86 -0.11 -2.89 16 28 H 0.04 1.47 6.86 -2.38 -0.02 1.45 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 33 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 34 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 12.18 6.16 -92.71 -0.57 11.61 16 38 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.14 2.41 6.29 -2.39 -0.02 2.39 16 40 H 0.05 1.10 8.07 -2.39 -0.02 1.08 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 45 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.14 1.95 6.45 -2.91 -0.02 1.93 16 Total: -1.00 -67.46 368.73 3.57 -63.89 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.40 Total: 22.82 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.38 Total: -18.63 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.10 Total: -75.29 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.14 Total: -37.92 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.46 3.57 -63.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.329 kcal (2) G-P(sol) polarization free energy of solvation -67.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds