Wall clock time and date at job start Tue Mar 31 2020 12:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 300.00028 * 14 13 12 16 16 C 1.52996 * 109.47131 * 59.99859 * 14 13 12 17 17 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 14 13 19 19 C 1.37876 * 120.00428 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99996 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.46792 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46980 * 119.99883 * 21 19 17 24 24 H 1.48498 * 109.46996 * 239.99688 * 21 19 17 25 25 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 8 7 27 27 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 31 31 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 32 32 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 35 35 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 36 36 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 38 38 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 39 39 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 40 40 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47067 * 300.00018 * 15 14 13 42 42 H 1.09001 * 109.46997 * 60.00426 * 16 14 13 43 43 H 1.09004 * 109.47552 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.47452 * 300.00000 * 16 14 13 45 45 H 0.96993 * 120.00405 * 179.97438 * 20 19 17 46 46 H 1.07999 * 119.97019 * 179.70188 * 25 8 7 47 47 H 1.07998 * 120.03323 * 180.24999 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6374 4.7613 -0.2069 12 7 8.4391 6.7166 0.4688 13 6 9.5656 6.6274 -0.4636 14 6 10.4456 7.8707 -0.3204 15 6 9.6197 9.1193 -0.6364 16 6 10.9751 7.9586 1.1123 17 6 11.6041 7.7794 -1.2799 18 1 11.7030 6.9202 -1.9268 19 6 12.5383 8.7921 -1.3312 20 7 12.4182 9.8381 -0.5431 21 14 13.9747 8.6785 -2.5201 22 1 13.8811 7.4120 -3.2899 23 1 13.9345 9.8304 -3.4565 24 1 15.2499 8.7031 -1.7595 25 6 4.4502 4.5909 0.4380 26 6 3.6576 3.4676 0.3029 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4754 1.4869 -0.9926 32 1 5.1569 1.4805 2.5907 33 1 6.5716 3.4820 2.8163 34 1 6.7442 5.8810 2.4991 35 1 5.7789 6.7075 1.2527 36 1 8.3501 7.4883 1.0495 37 1 10.1542 5.7381 -0.2382 38 1 9.1883 6.5644 -1.4843 39 1 8.7815 9.1856 0.0574 40 1 10.2466 10.0051 -0.5340 41 1 9.2425 9.0567 -1.6571 42 1 11.5636 7.0691 1.3373 43 1 11.6018 8.8446 1.2144 44 1 10.1370 8.0249 1.8060 45 1 13.0756 10.5504 -0.5789 46 1 4.2519 5.4665 -0.1623 47 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458042615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:34 Heat of formation + Delta-G solvation = -40.372286 kcal Electronic energy + Delta-G solvation = -25419.452553 eV Core-core repulsion = 21760.782159 eV Total energy + Delta-G solvation = -3658.670394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37690 -39.30161 -37.73283 -36.28359 -34.49965 -33.24541 -32.09337 -31.10049 -30.76948 -27.80274 -26.56421 -25.73092 -25.45407 -24.51056 -22.88376 -21.61126 -20.34193 -19.94198 -18.77736 -18.35758 -16.86895 -16.67823 -16.11283 -15.82880 -15.69969 -15.13971 -14.82575 -14.60828 -14.52745 -14.22360 -13.71254 -13.54126 -13.34028 -13.04134 -12.90431 -12.80627 -12.56223 -12.19355 -11.84766 -11.65019 -11.52644 -11.34560 -11.25446 -11.18604 -10.89392 -10.86319 -10.66324 -10.38866 -10.20637 -9.94491 -9.63793 -9.53681 -9.24238 -9.02875 -8.78168 -8.44661 -8.29248 -8.13541 -6.02557 -4.12374 1.31253 1.35776 1.62969 3.10098 3.11557 3.26784 3.35432 3.40099 3.57210 4.00762 4.39698 4.40705 4.58557 4.71682 4.74499 4.78701 4.91837 5.00181 5.19164 5.24279 5.29598 5.33911 5.37197 5.47277 5.57677 5.65799 5.97378 6.06152 6.13592 6.18188 6.25169 6.28771 6.33819 6.51098 6.58990 6.69344 6.79362 6.81984 6.93803 7.01684 7.05777 7.27348 7.35571 7.55348 7.69419 8.00679 8.07753 8.16889 8.38644 8.75251 8.88904 9.53489 10.98864 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031414 B = 0.002003 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.120379 B =13977.534241 C =14278.696999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.123 3.877 6 C -0.149 4.149 7 C -0.065 4.065 8 C -0.093 4.093 9 C -0.102 4.102 10 C 0.503 3.497 11 O -0.545 6.545 12 N -0.719 5.719 13 C 0.133 3.867 14 C 0.054 3.946 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.065 4.065 26 C -0.207 4.207 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.259 0.741 46 H 0.123 0.877 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 -11.116 5.843 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.011 3.989 4 O -0.228 6.228 5 C 0.078 3.922 6 C -0.168 4.168 7 C -0.083 4.083 8 C -0.094 4.094 9 C -0.142 4.142 10 C 0.288 3.712 11 O -0.422 6.422 12 N -0.370 5.370 13 C 0.010 3.990 14 C 0.053 3.947 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.083 4.083 26 C -0.226 4.226 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.232 0.768 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.813 -11.814 5.439 24.543 hybrid contribution 0.723 0.519 -0.625 1.088 sum -20.090 -11.295 4.814 23.545 Atomic orbital electron populations 1.23880 0.95412 1.02555 0.99243 1.22694 0.95657 0.97883 1.00949 1.21809 0.87950 0.96665 0.92460 1.86060 1.42201 1.35992 1.58569 1.18948 0.91693 0.85851 0.95716 1.20340 0.95867 0.99768 1.00826 1.20805 0.97610 0.91643 0.98288 1.19233 0.96495 0.95450 0.98187 1.20659 0.95349 0.97487 1.00688 1.20461 0.83473 0.83110 0.84110 1.90691 1.76148 1.32156 1.43249 1.46330 1.26551 1.22295 1.41837 1.21684 0.85708 1.00468 0.91109 1.18376 0.92567 0.89319 0.94408 1.21822 0.97157 1.02573 0.97210 1.21819 0.98739 1.02500 0.95709 1.21028 1.07603 1.05268 1.20384 0.92422 1.24884 0.97778 0.95232 0.95671 1.69811 1.35625 1.08798 1.38242 0.86524 0.82349 0.78061 0.81009 1.19770 1.21075 1.21060 1.20769 0.93821 0.97595 0.96159 1.21132 1.03745 0.94250 1.03454 0.88238 0.87453 0.86234 0.91517 0.90951 0.85321 0.85410 0.88235 0.88317 0.76762 0.92841 0.92865 0.97484 0.89627 0.95492 0.95472 0.89631 0.97470 0.93077 0.85890 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.31 29.01 0.42 -0.56 16 2 C -0.15 -1.11 9.89 -36.03 -0.36 -1.46 16 3 C 0.09 0.73 5.15 36.01 0.19 0.91 16 4 O -0.31 -3.63 10.12 -19.42 -0.20 -3.83 16 5 C 0.12 1.52 6.69 -39.21 -0.26 1.26 16 6 C -0.15 -1.84 9.99 -39.43 -0.39 -2.23 16 7 C -0.07 -0.81 9.69 -39.61 -0.38 -1.20 16 8 C -0.09 -1.20 4.37 -104.60 -0.46 -1.66 16 9 C -0.10 -1.22 5.83 -29.03 -0.17 -1.39 16 10 C 0.50 8.47 7.82 -10.98 -0.09 8.38 16 11 O -0.54 -11.43 16.03 5.56 0.09 -11.34 16 12 N -0.72 -12.48 4.96 -60.30 -0.30 -12.77 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 15 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.50 -13.20 8.01 -34.44 -0.28 -13.47 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.50 9.36 55.43 0.52 -22.98 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.07 -0.80 9.69 -39.60 -0.38 -1.19 16 26 C -0.21 -2.41 9.04 -39.43 -0.36 -2.77 16 27 H 0.10 0.47 7.90 -52.49 -0.41 0.06 16 28 H 0.11 0.46 8.06 -52.48 -0.42 0.03 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.07 0.48 7.38 -51.93 -0.38 0.10 16 31 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.40 6.10 6.16 -40.82 -0.25 5.85 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 45 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.16 6.30 -52.49 -0.33 0.82 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -30.43 384.47 -8.54 -38.96 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.31 Total: 5.42 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.11 Total: -14.97 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.22 Total: -35.75 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.11 Total: -15.17 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.43 -8.54 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458042615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds