Wall clock time and date at job start Tue Mar 31 2020 12:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 300.00028 * 14 13 12 16 16 C 1.52996 * 109.47131 * 59.99859 * 14 13 12 17 17 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 14 13 19 19 C 1.37876 * 120.00428 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99996 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.46792 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46980 * 119.99883 * 21 19 17 24 24 H 1.48498 * 109.46996 * 239.99688 * 21 19 17 25 25 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 8 7 27 27 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 31 31 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 32 32 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 35 35 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 36 36 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 38 38 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 39 39 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 40 40 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47067 * 300.00018 * 15 14 13 42 42 H 1.09001 * 109.46997 * 60.00426 * 16 14 13 43 43 H 1.09004 * 109.47552 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.47452 * 300.00000 * 16 14 13 45 45 H 0.96993 * 120.00405 * 179.97438 * 20 19 17 46 46 H 1.07999 * 119.97019 * 179.70188 * 25 8 7 47 47 H 1.07998 * 120.03323 * 180.24999 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6374 4.7613 -0.2069 12 7 8.4391 6.7166 0.4688 13 6 9.5656 6.6274 -0.4636 14 6 10.4456 7.8707 -0.3204 15 6 9.6197 9.1193 -0.6364 16 6 10.9751 7.9586 1.1123 17 6 11.6041 7.7794 -1.2799 18 1 11.7030 6.9202 -1.9268 19 6 12.5383 8.7921 -1.3312 20 7 12.4182 9.8381 -0.5431 21 14 13.9747 8.6785 -2.5201 22 1 13.8811 7.4120 -3.2899 23 1 13.9345 9.8304 -3.4565 24 1 15.2499 8.7031 -1.7595 25 6 4.4502 4.5909 0.4380 26 6 3.6576 3.4676 0.3029 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4754 1.4869 -0.9926 32 1 5.1569 1.4805 2.5907 33 1 6.5716 3.4820 2.8163 34 1 6.7442 5.8810 2.4991 35 1 5.7789 6.7075 1.2527 36 1 8.3501 7.4883 1.0495 37 1 10.1542 5.7381 -0.2382 38 1 9.1883 6.5644 -1.4843 39 1 8.7815 9.1856 0.0574 40 1 10.2466 10.0051 -0.5340 41 1 9.2425 9.0567 -1.6571 42 1 11.5636 7.0691 1.3373 43 1 11.6018 8.8446 1.2144 44 1 10.1370 8.0249 1.8060 45 1 13.0756 10.5504 -0.5789 46 1 4.2519 5.4665 -0.1623 47 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458042615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:33 Heat of formation + Delta-G solvation = -56.639770 kcal Electronic energy + Delta-G solvation = -25420.157964 eV Core-core repulsion = 21760.782159 eV Total energy + Delta-G solvation = -3659.375805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30017 -40.57531 -38.73482 -37.93013 -35.08027 -34.93803 -33.21392 -32.44197 -31.97043 -28.76827 -27.53748 -27.52527 -27.23759 -26.05836 -23.73803 -22.64130 -21.27172 -20.85898 -20.56541 -19.18379 -18.33157 -17.60155 -17.42755 -16.97252 -16.89784 -16.49411 -16.26678 -15.89233 -15.45335 -15.20985 -14.91462 -14.69509 -14.59113 -14.36994 -14.23008 -13.97280 -13.65836 -13.35978 -13.21383 -13.08212 -12.83229 -12.63861 -12.59956 -12.48461 -12.22680 -12.13939 -12.11290 -12.04637 -11.68546 -11.46392 -11.24677 -10.81515 -10.65343 -10.45096 -10.39159 -9.92740 -9.87493 -9.04676 -8.01998 -6.17317 0.41208 0.43491 1.12291 1.40497 1.44915 1.54105 1.79311 2.35011 2.40617 2.50978 2.91418 3.21404 3.75970 3.79852 3.92921 3.96820 4.06571 4.16149 4.25122 4.34934 4.43742 4.48696 4.50341 4.54257 4.62473 4.72805 4.74743 4.79539 4.95914 5.02968 5.08640 5.10452 5.14011 5.22057 5.30484 5.37957 5.40640 5.59577 5.64088 5.65130 5.67425 5.68310 5.69611 5.84721 6.17768 6.23903 6.44607 6.45073 6.76712 6.87142 7.42921 7.50286 8.96837 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031414 B = 0.002003 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.120379 B =13977.534241 C =14278.696999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.178 4.178 3 C 0.081 3.919 4 O -0.328 6.328 5 C 0.112 3.888 6 C -0.165 4.165 7 C -0.075 4.075 8 C -0.111 4.111 9 C -0.090 4.090 10 C 0.503 3.497 11 O -0.590 6.590 12 N -0.712 5.712 13 C 0.150 3.850 14 C 0.048 3.952 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.527 4.527 18 H 0.041 0.959 19 C 0.028 3.972 20 N -0.898 5.898 21 Si 0.943 3.057 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.076 4.076 26 C -0.212 4.212 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.410 0.590 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.260 0.740 46 H 0.137 0.863 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.767 -10.805 6.629 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.243 6.243 5 C 0.067 3.933 6 C -0.183 4.183 7 C -0.093 4.093 8 C -0.112 4.112 9 C -0.129 4.129 10 C 0.291 3.709 11 O -0.471 6.471 12 N -0.364 5.364 13 C 0.026 3.974 14 C 0.047 3.953 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.566 4.566 18 H 0.060 0.940 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.770 3.230 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.094 4.094 26 C -0.231 4.231 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.248 0.752 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.155 0.845 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.578 -11.485 6.248 26.090 hybrid contribution 1.179 0.350 -0.887 1.517 sum -21.398 -11.134 5.361 24.710 Atomic orbital electron populations 1.24123 0.94841 1.03830 0.96560 1.22688 0.96278 0.97260 1.03421 1.22022 0.87507 0.97910 0.91925 1.86047 1.42884 1.35903 1.59463 1.19159 0.91912 0.86351 0.95860 1.20581 0.96181 1.00286 1.01284 1.21047 0.97938 0.91647 0.98649 1.19441 0.97042 0.95998 0.98733 1.20674 0.93287 0.98366 1.00554 1.21319 0.83900 0.81736 0.83920 1.90678 1.77235 1.33865 1.45274 1.46151 1.25699 1.23237 1.41353 1.21189 0.86448 0.98715 0.91072 1.18390 0.92206 0.90412 0.94244 1.21656 0.97628 1.00861 0.97571 1.21655 0.99408 1.00757 0.95909 1.21301 1.09238 1.04907 1.21140 0.94037 1.25433 0.99603 0.95148 0.96961 1.69907 1.36059 1.08938 1.38763 0.85739 0.80093 0.77724 0.79433 1.20203 1.20689 1.20692 1.21057 0.93864 0.98322 0.96177 1.21389 1.04249 0.93862 1.03596 0.87165 0.85934 0.86581 0.90249 0.90863 0.84476 0.84169 0.85339 0.85354 0.75236 0.94816 0.94787 0.94063 0.91988 0.96460 0.96474 0.91989 0.94058 0.93037 0.84517 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 14.31 67.78 0.97 -0.49 16 2 C -0.18 -2.41 9.89 25.64 0.25 -2.15 16 3 C 0.08 1.29 5.15 71.24 0.37 1.66 16 4 O -0.33 -7.48 10.12 -92.39 -0.93 -8.42 16 5 C 0.11 2.72 6.69 22.51 0.15 2.87 16 6 C -0.16 -3.97 9.99 22.37 0.22 -3.75 16 7 C -0.07 -1.78 9.69 22.25 0.22 -1.56 16 8 C -0.11 -2.67 4.37 -19.85 -0.09 -2.76 16 9 C -0.09 -1.87 5.83 29.10 0.17 -1.70 16 10 C 0.50 16.06 7.82 87.66 0.69 16.74 16 11 O -0.59 -24.56 16.03 -3.03 -0.05 -24.60 16 12 N -0.71 -23.39 4.96 -463.06 -2.30 -25.68 16 13 C 0.15 6.35 4.50 86.38 0.39 6.74 16 14 C 0.05 2.20 0.50 -52.93 -0.03 2.18 16 15 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 16 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 17 C -0.53 -27.96 8.01 25.60 0.21 -27.76 16 18 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 19 C 0.03 1.49 5.15 84.65 0.44 1.93 16 20 N -0.90 -47.58 9.36 21.45 0.20 -47.38 16 21 Si 0.94 42.74 29.54 68.60 2.03 44.77 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 C -0.08 -1.75 9.69 22.25 0.22 -1.54 16 26 C -0.21 -4.70 9.04 22.37 0.20 -4.50 16 27 H 0.11 0.78 7.90 -2.92 -0.02 0.76 16 28 H 0.12 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.08 1.03 7.38 -2.39 -0.02 1.01 16 31 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.13 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.41 11.26 6.16 -92.71 -0.57 10.69 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.46 6.86 -2.38 -0.02 1.45 16 40 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 44 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 45 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 46 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 47 H 0.14 2.45 6.30 -2.91 -0.02 2.44 16 Total: -1.00 -66.44 384.47 4.86 -61.58 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.38 Total: 23.06 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 5.53 Total: -23.33 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.10 Total: -73.06 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.98 Total: -33.02 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.44 4.86 -61.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458042615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.938 kcal (2) G-P(sol) polarization free energy of solvation -66.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds