Wall clock time and date at job start Tue Mar 31 2020 12:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00405 * 2 1 4 4 C 1.38758 * 120.05251 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94026 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05960 * 359.72648 * 5 4 3 7 7 C 1.38239 * 120.10747 * 0.54785 * 6 5 4 8 8 C 1.50702 * 119.97173 * 179.72345 * 7 6 5 9 9 H 1.09005 * 115.56006 * 154.03914 * 8 7 6 10 10 C 1.53001 * 117.49943 * 8.35287 * 8 7 6 11 11 C 1.52997 * 60.00040 * 252.50900 * 10 8 7 12 12 H 1.09004 * 117.51947 * 107.47754 * 11 10 8 13 13 C 1.50699 * 117.49838 * 252.51109 * 11 10 8 14 14 O 1.21281 * 120.00193 * 68.62182 * 13 11 10 15 15 N 1.34777 * 119.99930 * 248.34687 * 13 11 10 16 16 C 1.46500 * 120.00049 * 180.27598 * 15 13 11 17 17 C 1.53000 * 109.46915 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47076 * 299.99500 * 17 16 15 19 19 C 1.52995 * 109.47336 * 59.99770 * 17 16 15 20 20 C 1.50706 * 109.46957 * 179.97438 * 17 16 15 21 21 H 1.08001 * 119.99875 * 1.34956 * 20 17 16 22 22 C 1.37874 * 120.00116 * 181.34680 * 20 17 16 23 23 N 1.31515 * 119.99953 * 193.97822 * 22 20 17 24 24 Si 1.86800 * 119.99957 * 13.97520 * 22 20 17 25 25 H 1.48498 * 109.47069 * 84.55046 * 24 22 20 26 26 H 1.48498 * 109.47323 * 204.55168 * 24 22 20 27 27 H 1.48499 * 109.47319 * 324.54870 * 24 22 20 28 28 C 1.38168 * 120.05874 * 359.45221 * 7 6 5 29 29 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46771 * 299.99787 * 1 2 3 31 31 H 1.08999 * 109.47499 * 59.99586 * 1 2 3 32 32 H 1.07995 * 120.02439 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.97044 * 180.02562 * 5 4 3 34 34 H 1.07994 * 119.94534 * 180.29561 * 6 5 4 35 35 H 1.08994 * 117.50316 * 145.01954 * 10 8 7 36 36 H 1.09003 * 117.49515 * 359.97438 * 10 8 7 37 37 H 0.97002 * 119.99780 * 0.26733 * 15 13 11 38 38 H 1.09000 * 109.46748 * 299.99695 * 16 15 13 39 39 H 1.09005 * 109.47365 * 59.99767 * 16 15 13 40 40 H 1.08997 * 109.46914 * 69.36978 * 18 17 16 41 41 H 1.08999 * 109.46774 * 189.37160 * 18 17 16 42 42 H 1.09000 * 109.47014 * 309.37063 * 18 17 16 43 43 H 1.08999 * 109.47006 * 60.00208 * 19 17 16 44 44 H 1.09000 * 109.47339 * 179.97438 * 19 17 16 45 45 H 1.09000 * 109.47459 * 299.99944 * 19 17 16 46 46 H 0.97008 * 119.99717 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.02950 * 180.24694 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6757 0.0046 7 6 4.0561 2.5170 -0.0005 8 6 5.5609 2.5980 -0.0006 9 1 6.0782 1.7386 0.4261 10 6 6.1942 3.9759 0.2023 11 6 6.2299 3.3131 -1.1762 12 1 5.5815 3.7246 -1.9498 13 6 7.5535 2.7753 -1.6556 14 8 8.0486 1.8104 -1.1127 15 7 8.1844 3.3633 -2.6914 16 6 9.4682 2.8368 -3.1614 17 6 9.9647 3.6791 -4.3382 18 6 8.9423 3.6199 -5.4750 19 6 10.1428 5.1303 -3.8876 20 6 11.2856 3.1379 -4.8214 21 1 11.7163 2.2660 -4.3516 22 6 11.9443 3.7559 -5.8631 23 7 12.9404 3.1445 -6.4662 24 14 11.4219 5.4613 -6.4179 25 1 12.0846 6.4830 -5.5680 26 1 11.8176 5.6638 -7.8348 27 1 9.9481 5.5931 -6.2920 28 6 3.4312 1.2847 0.0000 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2129 2.3203 -0.0005 33 1 1.3341 4.5113 -0.0011 34 1 3.7924 4.6379 0.0090 35 1 7.1281 4.0231 0.7624 36 1 5.5224 4.8239 0.3354 37 1 7.7884 4.1350 -3.1257 38 1 10.1964 2.8786 -2.3514 39 1 9.3412 1.8030 -3.4829 40 1 8.0418 4.1597 -5.1822 41 1 9.3660 4.0777 -6.3688 42 1 8.6909 2.5800 -5.6837 43 1 10.8712 5.1725 -3.0778 44 1 10.4969 5.7303 -4.7259 45 1 9.1876 5.5220 -3.5379 46 1 13.4041 3.5795 -7.1989 47 1 4.0207 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:26 Heat of formation + Delta-G solvation = -13.039000 kcal Electronic energy + Delta-G solvation = -25789.030854 eV Core-core repulsion = 22131.545720 eV Total energy + Delta-G solvation = -3657.485134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61558 -39.74215 -38.23690 -36.89354 -35.78968 -33.29045 -31.53191 -31.34149 -30.14467 -27.67545 -26.62318 -26.35858 -25.05491 -23.86223 -23.42850 -22.68434 -20.65010 -19.85077 -19.10664 -18.11264 -17.24921 -16.54399 -16.21143 -16.07478 -16.04516 -15.39889 -15.33171 -14.93162 -14.62294 -14.21426 -13.84233 -13.65594 -13.22474 -13.11521 -12.92257 -12.81806 -12.65657 -12.39322 -12.21425 -12.05272 -11.93160 -11.89880 -11.61268 -11.32059 -11.06102 -10.76973 -10.61752 -10.44219 -10.31307 -10.17672 -10.07282 -9.57661 -9.13250 -8.93841 -8.69336 -8.54628 -8.46915 -8.43788 -6.15160 -4.12422 0.98227 1.17677 2.73509 2.92662 3.23418 3.30324 3.33775 3.38105 3.60031 3.93912 4.34929 4.40185 4.48798 4.63570 4.70485 4.76086 4.77142 4.79111 4.85155 5.06576 5.09502 5.15416 5.18984 5.24801 5.45372 5.51133 5.71366 5.74915 5.84049 5.93269 6.01584 6.04553 6.05477 6.15277 6.35221 6.37321 6.47184 6.48639 6.52033 6.62376 6.68649 6.78455 6.96356 7.09652 7.21169 7.42224 7.71541 7.93637 8.44032 8.59787 8.90302 9.48624 10.97886 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002299 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.836281 B =12176.815450 C =12283.739020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.214 4.214 5 C -0.078 4.078 6 C -0.157 4.157 7 C -0.009 4.009 8 C -0.088 4.088 9 H 0.129 0.871 10 C -0.143 4.143 11 C -0.173 4.173 12 H 0.123 0.877 13 C 0.535 3.465 14 O -0.547 6.547 15 N -0.717 5.717 16 C 0.142 3.858 17 C 0.028 3.972 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.513 4.513 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.891 5.891 24 Si 0.886 3.114 25 H -0.286 1.286 26 H -0.305 1.305 27 H -0.249 1.249 28 C -0.141 4.141 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.030 0.970 46 H 0.264 0.736 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.683 2.455 13.304 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.233 4.233 5 C -0.096 4.096 6 C -0.175 4.175 7 C -0.009 4.009 8 C -0.107 4.107 9 H 0.147 0.853 10 C -0.181 4.181 11 C -0.194 4.194 12 H 0.141 0.859 13 C 0.320 3.680 14 O -0.425 6.425 15 N -0.367 5.367 16 C 0.019 3.981 17 C 0.027 3.973 18 C -0.200 4.200 19 C -0.204 4.204 20 C -0.550 4.550 21 H 0.095 0.905 22 C -0.128 4.128 23 N -0.527 5.527 24 Si 0.719 3.281 25 H -0.214 1.214 26 H -0.234 1.234 27 H -0.175 1.175 28 C -0.160 4.160 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.066 1.547 13.523 28.523 hybrid contribution -0.592 1.513 -0.742 1.786 sum -25.658 3.060 12.781 28.828 Atomic orbital electron populations 1.23053 0.78413 1.03971 1.01287 1.86089 1.21348 1.26950 1.88696 1.18978 0.92198 0.84176 0.96317 1.21218 0.99936 0.92463 1.09668 1.20888 0.94435 0.96961 0.97310 1.20995 0.93701 0.98231 1.04595 1.18905 0.93125 0.92316 0.96592 1.21054 0.90407 0.98039 1.01188 0.85281 1.23126 1.03133 0.95576 0.96219 1.22396 0.97543 1.05983 0.93471 0.85863 1.19507 0.84996 0.83268 0.80245 1.90683 1.67415 1.27099 1.57343 1.46227 1.23824 1.33373 1.33244 1.21529 0.81872 0.97854 0.96807 1.18725 0.96018 0.91574 0.90998 1.22299 0.97071 1.00366 1.00243 1.22356 0.99114 0.98571 1.00388 1.20714 1.02653 1.14529 1.17154 0.90547 1.24983 0.94910 0.97662 0.95263 1.69956 1.23277 1.37129 1.22368 0.87287 0.79523 0.85326 0.76005 1.21365 1.23419 1.17523 1.20259 0.91263 0.98432 1.06017 0.88215 0.92692 0.92652 0.85614 0.85729 0.85546 0.87558 0.87466 0.76809 0.91962 0.91852 0.95922 0.92513 0.93390 0.92793 0.94051 0.95130 0.92563 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.21 10.50 -19.43 -0.20 -3.42 16 3 C 0.13 1.35 6.69 -39.21 -0.26 1.09 16 4 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 5 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 6 C -0.16 -1.42 9.30 -39.56 -0.37 -1.79 16 7 C -0.01 -0.10 5.61 -104.65 -0.59 -0.68 16 8 C -0.09 -1.00 5.55 -91.77 -0.51 -1.51 16 9 H 0.13 1.65 7.67 -51.93 -0.40 1.25 16 10 C -0.14 -1.40 9.56 -26.73 -0.26 -1.66 16 11 C -0.17 -2.05 5.82 -91.77 -0.53 -2.59 16 12 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 13 C 0.53 8.65 7.61 -10.99 -0.08 8.57 16 14 O -0.55 -10.94 16.26 5.56 0.09 -10.84 16 15 N -0.72 -11.70 5.00 -60.29 -0.30 -12.00 16 16 C 0.14 2.84 4.49 -4.04 -0.02 2.82 16 17 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 18 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 19 C -0.15 -2.96 7.52 37.16 0.28 -2.68 16 20 C -0.51 -13.76 8.62 -34.44 -0.30 -14.06 16 21 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 22 C 0.07 2.07 5.32 -17.82 -0.09 1.97 16 23 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 24 Si 0.89 21.05 22.79 -169.99 -3.87 17.17 16 25 H -0.29 -6.77 7.10 56.52 0.40 -6.36 16 26 H -0.31 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.25 -5.37 4.65 56.52 0.26 -5.11 16 28 C -0.14 -1.60 9.68 -39.43 -0.38 -1.98 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.13 0.92 6.01 -52.49 -0.32 0.60 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.11 0.79 6.17 -51.93 -0.32 0.47 16 37 H 0.40 5.60 6.26 -40.82 -0.26 5.35 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 41 H 0.06 1.23 4.30 -51.93 -0.22 1.00 16 42 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 45 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -32.32 367.72 -7.63 -39.94 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.98 Total: 6.13 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.67 Total: -16.67 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.47 Total: -37.86 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.11 Total: -14.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.87 Total: 17.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.32 -7.63 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.905 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds