Wall clock time and date at job start Tue Mar 31 2020 12:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00405 * 2 1 4 4 C 1.38758 * 120.05251 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94026 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05960 * 359.72648 * 5 4 3 7 7 C 1.38239 * 120.10747 * 0.54785 * 6 5 4 8 8 C 1.50702 * 119.97173 * 179.72345 * 7 6 5 9 9 H 1.09005 * 115.56006 * 154.03914 * 8 7 6 10 10 C 1.53001 * 117.49943 * 8.35287 * 8 7 6 11 11 C 1.52997 * 60.00040 * 252.50900 * 10 8 7 12 12 H 1.09004 * 117.51947 * 107.47754 * 11 10 8 13 13 C 1.50699 * 117.49838 * 252.51109 * 11 10 8 14 14 O 1.21281 * 120.00193 * 68.62182 * 13 11 10 15 15 N 1.34777 * 119.99930 * 248.34687 * 13 11 10 16 16 C 1.46500 * 120.00049 * 180.27598 * 15 13 11 17 17 C 1.53000 * 109.46915 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47076 * 299.99500 * 17 16 15 19 19 C 1.52995 * 109.47336 * 59.99770 * 17 16 15 20 20 C 1.50706 * 109.46957 * 179.97438 * 17 16 15 21 21 H 1.08001 * 119.99875 * 1.34956 * 20 17 16 22 22 C 1.37874 * 120.00116 * 181.34680 * 20 17 16 23 23 N 1.31515 * 119.99953 * 193.97822 * 22 20 17 24 24 Si 1.86800 * 119.99957 * 13.97520 * 22 20 17 25 25 H 1.48498 * 109.47069 * 84.55046 * 24 22 20 26 26 H 1.48498 * 109.47323 * 204.55168 * 24 22 20 27 27 H 1.48499 * 109.47319 * 324.54870 * 24 22 20 28 28 C 1.38168 * 120.05874 * 359.45221 * 7 6 5 29 29 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46771 * 299.99787 * 1 2 3 31 31 H 1.08999 * 109.47499 * 59.99586 * 1 2 3 32 32 H 1.07995 * 120.02439 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.97044 * 180.02562 * 5 4 3 34 34 H 1.07994 * 119.94534 * 180.29561 * 6 5 4 35 35 H 1.08994 * 117.50316 * 145.01954 * 10 8 7 36 36 H 1.09003 * 117.49515 * 359.97438 * 10 8 7 37 37 H 0.97002 * 119.99780 * 0.26733 * 15 13 11 38 38 H 1.09000 * 109.46748 * 299.99695 * 16 15 13 39 39 H 1.09005 * 109.47365 * 59.99767 * 16 15 13 40 40 H 1.08997 * 109.46914 * 69.36978 * 18 17 16 41 41 H 1.08999 * 109.46774 * 189.37160 * 18 17 16 42 42 H 1.09000 * 109.47014 * 309.37063 * 18 17 16 43 43 H 1.08999 * 109.47006 * 60.00208 * 19 17 16 44 44 H 1.09000 * 109.47339 * 179.97438 * 19 17 16 45 45 H 1.09000 * 109.47459 * 299.99944 * 19 17 16 46 46 H 0.97008 * 119.99717 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.02950 * 180.24694 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6757 0.0046 7 6 4.0561 2.5170 -0.0005 8 6 5.5609 2.5980 -0.0006 9 1 6.0782 1.7386 0.4261 10 6 6.1942 3.9759 0.2023 11 6 6.2299 3.3131 -1.1762 12 1 5.5815 3.7246 -1.9498 13 6 7.5535 2.7753 -1.6556 14 8 8.0486 1.8104 -1.1127 15 7 8.1844 3.3633 -2.6914 16 6 9.4682 2.8368 -3.1614 17 6 9.9647 3.6791 -4.3382 18 6 8.9423 3.6199 -5.4750 19 6 10.1428 5.1303 -3.8876 20 6 11.2856 3.1379 -4.8214 21 1 11.7163 2.2660 -4.3516 22 6 11.9443 3.7559 -5.8631 23 7 12.9404 3.1445 -6.4662 24 14 11.4219 5.4613 -6.4179 25 1 12.0846 6.4830 -5.5680 26 1 11.8176 5.6638 -7.8348 27 1 9.9481 5.5931 -6.2920 28 6 3.4312 1.2847 0.0000 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2129 2.3203 -0.0005 33 1 1.3341 4.5113 -0.0011 34 1 3.7924 4.6379 0.0090 35 1 7.1281 4.0231 0.7624 36 1 5.5224 4.8239 0.3354 37 1 7.7884 4.1350 -3.1257 38 1 10.1964 2.8786 -2.3514 39 1 9.3412 1.8030 -3.4829 40 1 8.0418 4.1597 -5.1822 41 1 9.3660 4.0777 -6.3688 42 1 8.6909 2.5800 -5.6837 43 1 10.8712 5.1725 -3.0778 44 1 10.4969 5.7303 -4.7259 45 1 9.1876 5.5220 -3.5379 46 1 13.4041 3.5795 -7.1989 47 1 4.0207 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458046783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:25 Heat of formation + Delta-G solvation = -34.371347 kcal Electronic energy + Delta-G solvation = -25789.955894 eV Core-core repulsion = 22131.545720 eV Total energy + Delta-G solvation = -3658.410174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44370 -40.82214 -39.20409 -38.33420 -36.76139 -34.98785 -33.42514 -32.05503 -30.83791 -28.20329 -28.10945 -27.94887 -27.03911 -24.85050 -24.37600 -23.41854 -21.50077 -21.09841 -20.79067 -18.88890 -18.43467 -18.00581 -17.22265 -17.10753 -16.80360 -16.67627 -16.60124 -16.33256 -15.75511 -15.29643 -14.92644 -14.77367 -14.62426 -14.39798 -14.30992 -14.01211 -13.75408 -13.74978 -13.60032 -13.24531 -12.95145 -12.61813 -12.52161 -12.39915 -12.25359 -12.13694 -11.95466 -11.76765 -11.72118 -11.51374 -11.47900 -11.10529 -10.86635 -10.61737 -10.38871 -10.00977 -9.68045 -9.13506 -8.30244 -6.32240 0.28259 0.49797 1.37030 1.38262 1.51596 1.53716 2.21203 2.35053 2.37555 2.66131 3.05609 3.08649 3.57999 3.71489 3.87956 3.92484 4.00576 4.09244 4.16875 4.22042 4.30360 4.32669 4.39345 4.39779 4.41644 4.56064 4.72537 4.72915 4.78109 4.82690 4.83548 4.86148 4.93670 5.00818 5.03584 5.06710 5.13631 5.17938 5.35372 5.43094 5.51557 5.53957 5.66786 5.72102 5.79496 5.84963 6.29878 6.47085 6.64569 6.72748 7.30939 7.32878 8.86984 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002299 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.836281 B =12176.815450 C =12283.739020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.113 3.887 4 C -0.214 4.214 5 C -0.075 4.075 6 C -0.156 4.156 7 C -0.017 4.017 8 C -0.096 4.096 9 H 0.101 0.899 10 C -0.118 4.118 11 C -0.174 4.174 12 H 0.152 0.848 13 C 0.531 3.469 14 O -0.594 6.594 15 N -0.705 5.705 16 C 0.157 3.843 17 C 0.027 3.973 18 C -0.141 4.141 19 C -0.146 4.146 20 C -0.518 4.518 21 H 0.025 0.975 22 C 0.013 3.987 23 N -0.947 5.947 24 Si 0.947 3.053 25 H -0.280 1.280 26 H -0.316 1.316 27 H -0.202 1.202 28 C -0.171 4.171 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.414 0.586 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.264 0.736 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.997 6.492 13.813 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.068 3.932 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.018 4.018 8 C -0.115 4.115 9 H 0.119 0.881 10 C -0.155 4.155 11 C -0.195 4.195 12 H 0.170 0.830 13 C 0.319 3.681 14 O -0.475 6.475 15 N -0.356 5.356 16 C 0.033 3.967 17 C 0.026 3.974 18 C -0.199 4.199 19 C -0.203 4.203 20 C -0.557 4.557 21 H 0.043 0.957 22 C -0.184 4.184 23 N -0.586 5.586 24 Si 0.776 3.224 25 H -0.208 1.208 26 H -0.246 1.246 27 H -0.125 1.125 28 C -0.190 4.190 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.118 0.882 36 H 0.162 0.838 37 H 0.252 0.748 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -29.435 5.604 14.051 33.095 hybrid contribution 0.742 0.059 -0.801 1.094 sum -28.693 5.662 13.250 32.108 Atomic orbital electron populations 1.23332 0.76344 1.05434 1.02389 1.86052 1.23626 1.27336 1.88800 1.19148 0.92094 0.85096 0.96831 1.21542 1.01134 0.91993 1.08569 1.21307 0.94439 0.97852 0.95648 1.21269 0.94144 0.98322 1.03663 1.18869 0.92512 0.92782 0.97592 1.20942 0.91082 0.98343 1.01116 0.88098 1.23293 1.03124 0.95533 0.93533 1.22344 0.95118 1.07062 0.94974 0.83036 1.20305 0.86136 0.82366 0.79283 1.90672 1.68936 1.29252 1.58679 1.45965 1.22349 1.33802 1.33472 1.21034 0.83464 0.96521 0.95728 1.18658 0.93695 0.93011 0.92017 1.22227 0.98174 1.00619 0.98853 1.22284 1.01536 0.96481 0.99994 1.21032 1.05022 1.12952 1.16661 0.95683 1.25919 0.94913 1.02118 0.95451 1.70126 1.25509 1.39357 1.23619 0.86291 0.82016 0.79374 0.74682 1.20769 1.24561 1.12547 1.20332 0.92123 0.98451 1.08080 0.86780 0.91384 0.91596 0.83292 0.82513 0.83032 0.88246 0.83755 0.74846 0.93981 0.94517 0.91308 0.93518 0.94325 0.93501 0.94629 0.90460 0.92686 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.89 10.50 -92.44 -0.97 -7.86 16 3 C 0.11 2.30 6.69 22.51 0.15 2.45 16 4 C -0.21 -3.11 9.04 22.37 0.20 -2.91 16 5 C -0.07 -0.91 10.04 22.25 0.22 -0.69 16 6 C -0.16 -2.20 9.30 22.28 0.21 -1.99 16 7 C -0.02 -0.34 5.61 -19.88 -0.11 -0.46 16 8 C -0.10 -2.08 5.55 -11.54 -0.06 -2.14 16 9 H 0.10 2.74 7.67 -2.38 -0.02 2.72 16 10 C -0.12 -1.91 9.56 30.59 0.29 -1.62 16 11 C -0.17 -3.67 5.82 -11.54 -0.07 -3.74 16 12 H 0.15 2.38 8.14 -2.38 -0.02 2.36 16 13 C 0.53 16.71 7.61 87.66 0.67 17.38 16 14 O -0.59 -24.53 16.26 -3.03 -0.05 -24.58 16 15 N -0.70 -21.58 5.00 -463.05 -2.32 -23.90 16 16 C 0.16 6.35 4.49 86.38 0.39 6.74 16 17 C 0.03 1.16 0.50 -52.93 -0.03 1.13 16 18 C -0.14 -5.35 7.53 71.98 0.54 -4.81 16 19 C -0.15 -5.37 7.52 71.98 0.54 -4.82 16 20 C -0.52 -28.87 8.62 25.60 0.22 -28.65 16 21 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 22 C 0.01 0.75 5.32 84.65 0.45 1.20 16 23 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 24 Si 0.95 42.58 22.79 68.60 1.56 44.15 16 25 H -0.28 -12.31 7.10 99.48 0.71 -11.60 16 26 H -0.32 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.20 -7.57 4.65 99.48 0.46 -7.10 16 28 C -0.17 -3.94 9.68 22.37 0.22 -3.73 16 29 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.15 1.36 6.30 -2.91 -0.02 1.35 16 33 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.15 1.30 6.01 -2.91 -0.02 1.28 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.14 1.29 6.17 -2.39 -0.01 1.28 16 37 H 0.41 9.79 6.26 -92.71 -0.58 9.21 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.07 1.97 7.13 -2.39 -0.02 1.95 16 41 H 0.05 1.86 4.30 -2.39 -0.01 1.85 16 42 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.36 2.25 -2.39 -0.01 1.35 16 45 H 0.08 2.12 6.86 -2.39 -0.02 2.10 16 46 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 47 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -77.06 367.72 3.64 -73.42 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.16 Total: 23.00 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.95 Total: -25.35 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.02 Total: -82.79 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.02 Total: -32.44 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.56 Total: 44.15 kcal Total: -77.06 3.64 -73.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.050 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds