Wall clock time and date at job start Tue Mar 31 2020 12:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00241 * 2 1 4 4 C 1.38744 * 120.08965 * 0.02562 * 3 2 1 5 5 C 1.38011 * 119.88015 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.28695 * 359.97438 * 5 4 3 7 7 C 1.38259 * 119.93427 * 0.02562 * 6 5 4 8 8 C 1.38405 * 119.91069 * 0.02562 * 7 6 5 9 9 C 1.51384 * 109.75556 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.30478 * 101.81726 * 9 7 6 11 11 C 1.50703 * 110.30291 * 223.87357 * 9 7 6 12 12 O 1.21279 * 119.99926 * 118.54163 * 11 9 7 13 13 N 1.34775 * 119.99773 * 298.54563 * 11 9 7 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47164 * 300.00241 * 15 14 13 17 17 C 1.52999 * 109.46623 * 60.00141 * 15 14 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99944 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46926 * 60.00512 * 22 20 18 24 24 H 1.48506 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47227 * 300.00303 * 22 20 18 26 26 C 1.54347 * 105.16754 * 342.79496 * 9 7 6 27 27 C 1.51388 * 130.32273 * 180.02562 * 6 5 4 28 28 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47302 * 300.00415 * 1 2 3 30 30 H 1.09005 * 109.47254 * 60.00091 * 1 2 3 31 31 H 1.08004 * 120.06290 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.85540 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.91725 * 180.02562 * 8 7 6 34 34 H 0.96992 * 120.00503 * 359.97438 * 13 11 9 35 35 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 36 36 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 37 37 H 1.09000 * 109.47140 * 60.00051 * 16 15 14 38 38 H 1.09001 * 109.47230 * 179.97438 * 16 15 14 39 39 H 1.09001 * 109.47375 * 300.00034 * 16 15 14 40 40 H 1.09001 * 109.47362 * 60.00551 * 17 15 14 41 41 H 1.09002 * 109.46716 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47486 * 299.99829 * 17 15 14 43 43 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.81898 * 144.59876 * 26 9 7 45 45 H 1.09002 * 110.81932 * 268.14863 * 26 9 7 46 46 H 1.09002 * 110.30313 * 316.11838 * 27 6 5 47 47 H 1.08999 * 110.30377 * 78.27005 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 0.0005 5 6 1.9233 3.6031 0.0011 6 6 3.3068 3.6774 0.0016 7 6 4.0600 2.5180 0.0011 8 6 3.4299 1.2856 -0.0005 9 6 5.5335 2.8650 0.0025 10 1 5.9489 2.7470 1.0032 11 6 6.2768 1.9941 -0.9774 12 8 6.8590 2.4967 -1.9151 13 7 6.2944 0.6567 -0.8116 14 6 7.0166 -0.1900 -1.7645 15 6 6.8798 -1.6563 -1.3494 16 6 7.4680 -1.8471 0.0501 17 6 5.4007 -2.0473 -1.3386 18 6 7.6221 -2.5273 -2.3299 19 1 8.1399 -2.0798 -3.1653 20 6 7.6409 -3.8954 -2.1598 21 7 7.0107 -4.4403 -1.1422 22 14 8.5616 -4.9750 -3.3748 23 1 9.9971 -4.5951 -3.3856 24 1 8.4298 -6.3981 -2.9712 25 1 7.9904 -4.7901 -4.7329 26 6 5.6007 4.3432 -0.4368 27 6 4.2231 4.8825 0.0028 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2135 2.3221 0.0014 32 1 1.3362 4.5094 0.0011 33 1 4.0182 0.3799 -0.0005 34 1 5.8291 0.2547 -0.0615 35 1 8.0704 0.0884 -1.7718 36 1 6.5978 -0.0538 -2.7615 37 1 6.9307 -1.2171 0.7590 38 1 7.3701 -2.8916 0.3460 39 1 8.5217 -1.5684 0.0425 40 1 4.9816 -1.9115 -2.3357 41 1 5.3033 -3.0920 -1.0433 42 1 4.8634 -1.4174 -0.6297 43 1 7.0237 -5.4028 -1.0227 44 1 6.4048 4.8652 0.0818 45 1 5.7201 4.4212 -1.5174 46 1 3.8657 5.6300 -0.7055 47 1 4.2862 5.3086 1.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:00 Heat of formation + Delta-G solvation = -58.058524 kcal Electronic energy + Delta-G solvation = -27329.790608 eV Core-core repulsion = 23670.353281 eV Total energy + Delta-G solvation = -3659.437327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84222 -39.40623 -38.11290 -36.36678 -34.67551 -33.34619 -31.68968 -30.69357 -28.69474 -28.49034 -26.73298 -25.68727 -25.52997 -24.71591 -22.87543 -21.62585 -20.86187 -19.79860 -18.71764 -17.82416 -17.11527 -16.33310 -15.86764 -15.75753 -15.44349 -15.38464 -14.97343 -14.66943 -14.33910 -13.94467 -13.56950 -13.40095 -13.09679 -12.85474 -12.74414 -12.49727 -12.23954 -12.10251 -11.78469 -11.63736 -11.52048 -11.35344 -11.33777 -11.15225 -10.85206 -10.70967 -10.66664 -10.58850 -10.34068 -10.17333 -9.59835 -9.59132 -9.24355 -8.83143 -8.73753 -8.41266 -8.27195 -8.07324 -5.98430 -4.08516 1.20506 1.36138 3.01029 3.21049 3.32369 3.36471 3.39926 3.59727 3.81729 4.34935 4.42753 4.49313 4.73895 4.85653 4.97521 5.01633 5.06876 5.12268 5.18440 5.27988 5.34475 5.37016 5.41151 5.55852 5.66537 5.75086 5.86890 6.05698 6.20603 6.24094 6.27523 6.28743 6.37093 6.54374 6.58051 6.62837 6.82031 6.88614 6.98528 7.06756 7.07191 7.35211 7.39927 7.60181 7.72747 8.05191 8.07759 8.19331 8.42179 8.71764 8.91797 9.56964 11.02847 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003935 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.636228 B = 7113.124713 C = 8660.345095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.070 4.070 6 C -0.129 4.129 7 C -0.050 4.050 8 C -0.134 4.134 9 C -0.073 4.073 10 H 0.113 0.887 11 C 0.513 3.487 12 O -0.548 6.548 13 N -0.714 5.714 14 C 0.131 3.869 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.056 0.944 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.893 3.107 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.102 4.102 27 C -0.076 4.076 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.005 0.995 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 14.586 6.726 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.086 3.914 4 C -0.225 4.225 5 C -0.088 4.088 6 C -0.129 4.129 7 C -0.051 4.051 8 C -0.152 4.152 9 C -0.094 4.094 10 H 0.130 0.870 11 C 0.298 3.702 12 O -0.427 6.427 13 N -0.365 5.365 14 C 0.008 3.992 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.186 4.186 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.140 4.140 27 C -0.113 4.113 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.233 0.767 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.039 14.521 6.124 19.832 hybrid contribution -0.091 -0.860 -0.254 0.901 sum -12.130 13.661 5.869 19.189 Atomic orbital electron populations 1.23051 0.78530 1.04044 1.01049 1.86146 1.21180 1.26524 1.88528 1.18763 0.91921 0.84302 0.96425 1.21107 0.99851 0.92116 1.09450 1.20322 0.92964 0.97002 0.98538 1.20454 0.93355 0.95561 1.03513 1.19953 0.94216 0.92678 0.98234 1.20000 0.91684 0.97945 1.05619 1.20962 0.91492 0.96540 1.00382 0.86965 1.20250 0.80803 0.83104 0.86032 1.90648 1.45707 1.73908 1.32423 1.46442 1.53532 1.05984 1.30554 1.21738 0.94842 0.91582 0.91019 1.18357 0.93815 0.88090 0.94213 1.21830 0.97598 1.02958 0.96437 1.21831 0.96083 1.03112 0.97616 1.20937 1.32169 0.91160 1.10163 0.92539 1.24871 0.95292 0.97878 0.95408 1.69799 1.42591 1.11061 1.28930 0.86642 0.80384 0.79302 0.81570 1.20314 1.21349 1.20311 1.22241 0.96490 0.91708 1.03560 1.21009 0.93275 0.95254 1.01796 0.88142 0.92812 0.92753 0.85354 0.85961 0.84738 0.76673 0.92691 0.92732 0.97598 0.89566 0.95444 0.95473 0.89599 0.97529 0.92986 0.90097 0.89016 0.90634 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.27 10.50 -19.43 -0.20 -4.47 16 3 C 0.13 1.81 6.68 -39.26 -0.26 1.55 16 4 C -0.21 -2.34 9.04 -39.48 -0.36 -2.69 16 5 C -0.07 -0.76 10.03 -39.55 -0.40 -1.16 16 6 C -0.13 -1.54 6.14 -104.16 -0.64 -2.18 16 7 C -0.05 -0.70 5.59 -104.22 -0.58 -1.28 16 8 C -0.13 -2.00 9.40 -39.39 -0.37 -2.37 16 9 C -0.07 -0.99 3.26 -91.88 -0.30 -1.29 16 10 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.51 9.15 7.13 -10.98 -0.08 9.07 16 12 O -0.55 -11.55 15.51 5.56 0.09 -11.46 16 13 N -0.71 -13.20 4.43 -60.29 -0.27 -13.47 16 14 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 17 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 18 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 21 N -0.89 -23.82 9.35 55.43 0.52 -23.30 16 22 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.10 -1.20 6.32 -25.33 -0.16 -1.36 16 27 C -0.08 -0.75 6.77 -26.85 -0.18 -0.93 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 31 H 0.13 1.11 6.31 -52.48 -0.33 0.78 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 2.15 4.81 -52.49 -0.25 1.90 16 34 H 0.40 6.83 4.20 -40.82 -0.17 6.66 16 35 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 38 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 42 H 0.01 0.12 5.77 -51.93 -0.30 -0.18 16 43 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.27 7.07 -51.93 -0.37 0.90 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -30.22 365.02 -8.56 -38.78 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.97 Total: 7.21 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.20 Total: -14.72 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.25 Total: -36.77 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.12 Total: -15.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.22 -8.56 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.274 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds