Wall clock time and date at job start Tue Mar 31 2020 12:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00241 * 2 1 4 4 C 1.38744 * 120.08965 * 0.02562 * 3 2 1 5 5 C 1.38011 * 119.88015 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.28695 * 359.97438 * 5 4 3 7 7 C 1.38259 * 119.93427 * 0.02562 * 6 5 4 8 8 C 1.38405 * 119.91069 * 0.02562 * 7 6 5 9 9 C 1.51384 * 109.75556 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.30478 * 101.81726 * 9 7 6 11 11 C 1.50703 * 110.30291 * 223.87357 * 9 7 6 12 12 O 1.21279 * 119.99926 * 118.54163 * 11 9 7 13 13 N 1.34775 * 119.99773 * 298.54563 * 11 9 7 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47164 * 300.00241 * 15 14 13 17 17 C 1.52999 * 109.46623 * 60.00141 * 15 14 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99944 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46926 * 60.00512 * 22 20 18 24 24 H 1.48506 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47227 * 300.00303 * 22 20 18 26 26 C 1.54347 * 105.16754 * 342.79496 * 9 7 6 27 27 C 1.51388 * 130.32273 * 180.02562 * 6 5 4 28 28 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47302 * 300.00415 * 1 2 3 30 30 H 1.09005 * 109.47254 * 60.00091 * 1 2 3 31 31 H 1.08004 * 120.06290 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.85540 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.91725 * 180.02562 * 8 7 6 34 34 H 0.96992 * 120.00503 * 359.97438 * 13 11 9 35 35 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 36 36 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 37 37 H 1.09000 * 109.47140 * 60.00051 * 16 15 14 38 38 H 1.09001 * 109.47230 * 179.97438 * 16 15 14 39 39 H 1.09001 * 109.47375 * 300.00034 * 16 15 14 40 40 H 1.09001 * 109.47362 * 60.00551 * 17 15 14 41 41 H 1.09002 * 109.46716 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47486 * 299.99829 * 17 15 14 43 43 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.81898 * 144.59876 * 26 9 7 45 45 H 1.09002 * 110.81932 * 268.14863 * 26 9 7 46 46 H 1.09002 * 110.30313 * 316.11838 * 27 6 5 47 47 H 1.08999 * 110.30377 * 78.27005 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 0.0005 5 6 1.9233 3.6031 0.0011 6 6 3.3068 3.6774 0.0016 7 6 4.0600 2.5180 0.0011 8 6 3.4299 1.2856 -0.0005 9 6 5.5335 2.8650 0.0025 10 1 5.9489 2.7470 1.0032 11 6 6.2768 1.9941 -0.9774 12 8 6.8590 2.4967 -1.9151 13 7 6.2944 0.6567 -0.8116 14 6 7.0166 -0.1900 -1.7645 15 6 6.8798 -1.6563 -1.3494 16 6 7.4680 -1.8471 0.0501 17 6 5.4007 -2.0473 -1.3386 18 6 7.6221 -2.5273 -2.3299 19 1 8.1399 -2.0798 -3.1653 20 6 7.6409 -3.8954 -2.1598 21 7 7.0107 -4.4403 -1.1422 22 14 8.5616 -4.9750 -3.3748 23 1 9.9971 -4.5951 -3.3856 24 1 8.4298 -6.3981 -2.9712 25 1 7.9904 -4.7901 -4.7329 26 6 5.6007 4.3432 -0.4368 27 6 4.2231 4.8825 0.0028 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2135 2.3221 0.0014 32 1 1.3362 4.5094 0.0011 33 1 4.0182 0.3799 -0.0005 34 1 5.8291 0.2547 -0.0615 35 1 8.0704 0.0884 -1.7718 36 1 6.5978 -0.0538 -2.7615 37 1 6.9307 -1.2171 0.7590 38 1 7.3701 -2.8916 0.3460 39 1 8.5217 -1.5684 0.0425 40 1 4.9816 -1.9115 -2.3357 41 1 5.3033 -3.0920 -1.0433 42 1 4.8634 -1.4174 -0.6297 43 1 7.0237 -5.4028 -1.0227 44 1 6.4048 4.8652 0.0818 45 1 5.7201 4.4212 -1.5174 46 1 3.8657 5.6300 -0.7055 47 1 4.2862 5.3086 1.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:59 Heat of formation + Delta-G solvation = -74.676509 kcal Electronic energy + Delta-G solvation = -27330.511218 eV Core-core repulsion = 23670.353281 eV Total energy + Delta-G solvation = -3660.157937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89197 -40.60275 -39.25453 -38.11896 -35.64878 -35.07189 -33.04292 -32.21964 -29.67774 -29.38274 -27.69717 -27.61187 -27.38819 -26.43386 -23.79160 -22.85085 -21.74690 -21.09760 -20.57173 -18.87403 -18.37782 -17.75850 -17.27345 -16.76050 -16.69171 -16.55212 -16.34545 -16.28807 -15.67276 -15.19675 -14.83381 -14.62365 -14.41266 -14.34451 -14.06108 -13.72047 -13.60667 -13.24682 -13.12691 -13.04061 -12.74193 -12.66271 -12.63068 -12.49020 -12.39492 -12.27492 -12.17044 -12.14222 -11.64838 -11.51945 -11.43384 -11.27872 -10.90916 -10.72015 -10.40830 -9.97202 -9.81187 -8.98051 -8.02734 -6.19151 0.26719 0.43875 1.43662 1.44177 1.51320 1.63153 2.28021 2.35485 2.48450 2.74394 3.20429 3.43113 3.52816 3.78843 3.96000 4.04574 4.22416 4.23883 4.35285 4.36320 4.40812 4.44502 4.48293 4.50577 4.67311 4.70129 4.73411 4.77746 4.95582 4.98562 5.02469 5.03322 5.10404 5.14358 5.16410 5.30072 5.32396 5.37132 5.39591 5.55575 5.63111 5.64948 5.65226 5.78183 6.10366 6.18320 6.41125 6.48074 6.60884 6.84210 7.25382 7.48401 8.96199 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003935 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.636228 B = 7113.124713 C = 8660.345095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.113 3.887 4 C -0.201 4.201 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.069 4.069 8 C -0.162 4.162 9 C -0.066 4.066 10 H 0.135 0.865 11 C 0.510 3.490 12 O -0.584 6.584 13 N -0.710 5.710 14 C 0.146 3.854 15 C 0.052 3.948 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.530 4.530 19 H 0.045 0.955 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.278 1.278 26 C -0.102 4.102 27 C -0.067 4.067 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.112 0.888 34 H 0.404 0.596 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.014 0.986 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 16.657 7.811 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.067 3.933 4 C -0.219 4.219 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.070 4.070 8 C -0.181 4.181 9 C -0.087 4.087 10 H 0.153 0.847 11 C 0.298 3.702 12 O -0.465 6.465 13 N -0.362 5.362 14 C 0.023 3.977 15 C 0.052 3.948 16 C -0.177 4.177 17 C -0.173 4.173 18 C -0.569 4.569 19 H 0.063 0.937 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.773 3.227 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.203 1.203 26 C -0.139 4.139 27 C -0.104 4.104 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.130 0.870 34 H 0.242 0.758 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.656 16.596 7.230 22.676 hybrid contribution 0.334 -1.499 -0.601 1.649 sum -13.322 15.098 6.630 21.198 Atomic orbital electron populations 1.23343 0.76299 1.05378 1.02495 1.86097 1.23676 1.27115 1.88731 1.18965 0.91850 0.85267 0.97171 1.21451 1.01210 0.91372 1.07891 1.20744 0.92779 0.98092 0.96794 1.20813 0.94152 0.95603 1.02603 1.20008 0.94287 0.93126 0.99531 1.20012 0.92544 0.97666 1.07863 1.21050 0.91084 0.96581 0.99981 0.84711 1.21077 0.80093 0.82815 0.86233 1.90627 1.47259 1.74421 1.34196 1.46326 1.53367 1.06341 1.30146 1.21294 0.94325 0.91242 0.90881 1.18346 0.93637 0.88689 0.94168 1.21660 0.97584 1.01999 0.96480 1.21642 0.96170 1.02077 0.97375 1.21216 1.32855 0.92107 1.10676 0.93696 1.25471 0.95996 0.98823 0.96837 1.69910 1.42946 1.11181 1.29702 0.85792 0.79260 0.77972 0.79635 1.20112 1.20704 1.20334 1.22277 0.98852 0.90571 1.02242 1.21036 0.91076 0.94554 1.03692 0.87076 0.90900 0.91613 0.82555 0.82462 0.86977 0.75805 0.93948 0.94735 0.94952 0.91763 0.95965 0.96719 0.91773 0.95301 0.92990 0.87991 0.91553 0.88951 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.31 10.50 -92.45 -0.97 -10.28 16 3 C 0.11 3.02 6.68 22.48 0.15 3.17 16 4 C -0.20 -4.00 9.04 22.34 0.20 -3.80 16 5 C -0.07 -1.19 10.03 22.29 0.22 -0.97 16 6 C -0.13 -2.78 6.14 -19.57 -0.12 -2.90 16 7 C -0.07 -1.83 5.59 -19.60 -0.11 -1.94 16 8 C -0.16 -4.84 9.40 22.40 0.21 -4.63 16 9 C -0.07 -1.72 3.26 -11.61 -0.04 -1.76 16 10 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 11 C 0.51 18.37 7.13 87.66 0.62 18.99 16 12 O -0.58 -25.16 15.51 -3.03 -0.05 -25.21 16 13 N -0.71 -26.80 4.43 -463.05 -2.05 -28.85 16 14 C 0.15 6.62 4.50 86.38 0.39 7.01 16 15 C 0.05 2.54 0.50 -52.93 -0.03 2.51 16 16 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 17 C -0.11 -5.49 8.08 71.98 0.58 -4.91 16 18 C -0.53 -28.91 8.01 25.60 0.21 -28.70 16 19 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 20 C 0.03 1.54 5.15 84.65 0.44 1.98 16 21 N -0.90 -49.08 9.35 21.45 0.20 -48.88 16 22 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.10 -2.18 6.32 31.50 0.20 -1.98 16 27 C -0.07 -1.06 6.77 30.52 0.21 -0.86 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.07 0.89 7.67 -2.38 -0.02 0.87 16 31 H 0.16 2.12 6.31 -2.91 -0.02 2.10 16 32 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.11 3.72 4.81 -2.91 -0.01 3.70 16 34 H 0.40 14.08 4.20 -92.71 -0.39 13.69 16 35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 38 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 39 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 42 H 0.03 1.21 5.77 -2.39 -0.01 1.19 16 43 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.78 7.07 -2.39 -0.02 1.76 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.51 365.02 4.58 -62.92 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.60 Total: 27.13 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.83 Total: -22.32 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.85 Total: -77.73 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.02 Total: -35.49 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.51 4.58 -62.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.752 kcal (2) G-P(sol) polarization free energy of solvation -67.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds