Wall clock time and date at job start Tue Mar 31 2020 12:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47247 * 240.00083 * 2 1 3 5 5 H 1.07998 * 120.00311 * 240.00250 * 4 2 1 6 6 C 1.37886 * 120.00146 * 59.99973 * 4 2 1 7 7 N 1.31511 * 119.99432 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00049 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47139 * 90.00046 * 8 6 4 10 10 H 1.48500 * 109.46843 * 209.99893 * 8 6 4 11 11 H 1.48501 * 109.47155 * 329.99914 * 8 6 4 12 12 C 1.53006 * 109.47229 * 120.00228 * 2 1 3 13 13 N 1.46499 * 109.46720 * 300.00184 * 12 2 1 14 14 C 1.34783 * 119.99737 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99906 * 179.97438 * 14 13 12 17 17 O 1.42905 * 109.67897 * 34.99816 * 16 14 13 18 18 C 1.53328 * 109.67908 * 155.51315 * 16 14 13 19 19 C 1.52741 * 108.38116 * 189.62844 * 18 16 14 20 20 C 1.50625 * 110.58986 * 308.89819 * 19 18 16 21 21 C 1.38916 * 117.75435 * 197.73021 * 20 19 18 22 22 C 1.37926 * 120.54516 * 180.24108 * 21 20 19 23 23 C 1.38269 * 119.77364 * 0.03475 * 22 21 20 24 24 C 1.37933 * 119.76995 * 359.88737 * 23 22 21 25 25 C 1.37662 * 122.56580 * 17.79521 * 20 19 18 26 26 C 1.50635 * 122.56357 * 359.23932 * 25 20 19 27 27 H 1.08992 * 109.46951 * 299.99715 * 1 2 3 28 28 H 1.09000 * 109.46692 * 60.00157 * 1 2 3 29 29 H 1.08999 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47227 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47322 * 300.00491 * 3 2 1 32 32 H 1.09004 * 109.47163 * 59.99876 * 3 2 1 33 33 H 0.97001 * 119.99520 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46766 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.46712 * 59.99923 * 12 2 1 36 36 H 0.96996 * 120.00284 * 359.97438 * 13 12 2 37 37 H 0.96705 * 113.99788 * 300.51664 * 17 16 14 38 38 H 1.09000 * 109.68276 * 309.34842 * 18 16 14 39 39 H 1.08997 * 109.67792 * 69.87238 * 18 16 14 40 40 H 1.08993 * 109.25515 * 69.19023 * 19 18 16 41 41 H 1.09004 * 109.24591 * 188.65071 * 19 18 16 42 42 H 1.07997 * 119.72542 * 0.25709 * 21 20 19 43 43 H 1.08000 * 120.11659 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.11296 * 179.85767 * 23 22 21 45 45 H 1.07999 * 119.72620 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.26078 * 257.52431 * 26 25 20 47 47 H 1.09001 * 109.25039 * 138.09200 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6294 -1.7583 -3.7122 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7808 16 6 1.3758 0.2198 4.9000 17 8 0.0656 0.7358 4.6568 18 6 1.3349 -0.7580 6.0804 19 6 0.6026 -0.0838 7.2390 20 6 1.1848 1.2781 7.5128 21 6 0.9074 1.8652 8.7409 22 6 1.4069 3.1131 9.0500 23 6 2.1898 3.7864 8.1305 24 6 2.4678 3.2045 6.9112 25 6 1.9679 1.9466 6.5990 26 6 2.3219 1.3648 5.2554 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7490 1.2492 36 1 0.9943 0.7581 2.3564 37 1 0.0197 1.3620 3.9213 38 1 0.8041 -1.6641 5.7883 39 1 2.3510 -1.0093 6.3842 40 1 -0.4523 0.0205 6.9855 41 1 0.6981 -0.7012 8.1322 42 1 0.2957 1.3401 9.4595 43 1 1.1873 3.5629 10.0070 44 1 2.5820 4.7648 8.3659 45 1 3.0790 3.7312 6.1933 46 1 3.3451 0.9900 5.2842 47 1 2.2461 2.1428 4.4957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:29 Heat of formation + Delta-G solvation = -78.049281 kcal Electronic energy + Delta-G solvation = -27174.609123 eV Core-core repulsion = 23514.304932 eV Total energy + Delta-G solvation = -3660.304191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82669 -39.24864 -37.17439 -36.36493 -34.37692 -33.19742 -32.60548 -30.89602 -30.05696 -28.91223 -25.89022 -25.78439 -25.18577 -24.10853 -22.91471 -22.30498 -20.48577 -19.57275 -18.98607 -17.98323 -16.61793 -16.31640 -15.94809 -15.54711 -15.09973 -14.82207 -14.63734 -14.60776 -14.38622 -14.27096 -13.71839 -13.24469 -13.16086 -12.99085 -12.86837 -12.60880 -12.26408 -12.21629 -12.08273 -11.66873 -11.49809 -11.42545 -11.25872 -11.10157 -10.94869 -10.89998 -10.73073 -10.44673 -10.38250 -10.23114 -9.69444 -9.51675 -9.13744 -8.88909 -8.83112 -8.65863 -8.53833 -8.38376 -6.06186 -4.16346 1.23037 1.25736 2.80249 3.25888 3.33020 3.35888 3.47373 3.61645 4.11245 4.35980 4.40056 4.47942 4.78447 4.80089 4.83402 4.91801 4.98703 5.15606 5.20808 5.30846 5.37785 5.45829 5.56596 5.62456 5.74078 5.87829 5.91433 6.01769 6.14691 6.18950 6.25907 6.35084 6.37389 6.43817 6.54097 6.69428 6.75393 6.85035 6.88424 6.92109 6.96055 7.29059 7.35158 7.50270 7.65266 7.92796 7.95936 8.09113 8.33180 8.52644 8.84154 9.49765 10.95254 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027633 B = 0.002843 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.046883 B = 9847.596973 C =10234.026294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.486 3.514 15 O -0.542 6.542 16 C 0.124 3.876 17 O -0.541 6.541 18 C -0.089 4.089 19 C -0.076 4.076 20 C -0.063 4.063 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.067 4.067 26 C -0.102 4.102 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.376 0.624 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 5.607 19.932 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.270 3.730 15 O -0.420 6.420 16 C 0.079 3.921 17 O -0.347 6.347 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.063 4.063 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.067 4.067 26 C -0.140 4.140 27 H 0.025 0.975 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.230 0.770 37 H 0.225 0.775 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.111 0.889 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.528 4.623 20.333 20.858 hybrid contribution 0.231 0.428 -1.468 1.546 sum -0.297 5.051 18.865 19.532 Atomic orbital electron populations 1.21834 0.97666 0.99284 1.00091 1.18358 0.92837 0.92708 0.90525 1.21836 0.98594 0.98348 1.00048 1.20976 1.31583 1.12131 0.89872 0.92442 1.24878 0.94834 0.94896 0.98869 1.69797 1.36643 1.22688 1.23286 0.86567 0.79331 0.79404 0.82552 1.20681 1.21241 1.19908 1.21769 0.98147 0.95917 0.83307 1.46323 1.52107 1.31527 1.06199 1.21134 0.81246 0.85307 0.85348 1.90684 1.38430 1.26105 1.86780 1.21394 0.83478 0.93641 0.93544 1.86613 1.27516 1.64317 1.56210 1.21365 1.02358 0.96908 0.92019 1.20398 1.00655 0.92134 0.98085 1.19621 0.96846 0.96397 0.93401 1.21132 1.00602 0.95856 0.96476 1.21040 0.98424 0.95242 0.99409 1.21020 0.99328 0.99919 0.94132 1.21141 1.00238 0.94974 0.97254 1.19358 0.97884 0.94503 0.95005 1.21100 1.00347 0.97505 0.95042 0.97516 0.89542 0.95387 0.95416 0.89493 0.97679 0.92964 0.92594 0.92579 0.77032 0.77541 0.90175 0.89553 0.89457 0.90630 0.86239 0.86296 0.86230 0.86158 0.88920 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.22 9.35 55.43 0.52 -22.70 16 8 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 N -0.71 -11.99 4.87 -60.29 -0.29 -12.28 16 14 C 0.49 8.09 6.72 -10.98 -0.07 8.02 16 15 O -0.54 -10.93 16.27 5.56 0.09 -10.84 16 16 C 0.12 1.61 0.94 -91.74 -0.09 1.52 16 17 O -0.54 -6.68 11.75 -35.23 -0.41 -7.10 16 18 C -0.09 -1.10 4.51 -26.69 -0.12 -1.22 16 19 C -0.08 -0.80 5.28 -28.05 -0.15 -0.95 16 20 C -0.06 -0.69 5.67 -104.62 -0.59 -1.29 16 21 C -0.12 -1.20 9.61 -39.44 -0.38 -1.58 16 22 C -0.12 -1.12 10.05 -39.68 -0.40 -1.52 16 23 C -0.13 -1.18 10.05 -39.68 -0.40 -1.57 16 24 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 25 C -0.07 -0.76 5.62 -104.62 -0.59 -1.35 16 26 C -0.10 -1.18 4.64 -28.05 -0.13 -1.31 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.39 5.84 4.67 -40.82 -0.19 5.65 16 37 H 0.38 3.72 7.59 45.56 0.35 4.07 16 38 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.09 0.96 7.73 -51.93 -0.40 0.55 16 41 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.12 0.94 8.05 -52.49 -0.42 0.51 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 46 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 47 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -29.11 367.41 -9.36 -38.48 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.62 Total: 9.21 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.16 Total: -15.79 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.22 Total: -34.98 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.32 Total: -17.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.11 -9.36 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.573 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds