Wall clock time and date at job start Tue Mar 31 2020 12:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.87219 * 304.00102 * 16 14 13 18 18 C 1.54102 * 109.87880 * 65.00200 * 16 14 13 19 19 C 1.54808 * 104.18966 * 121.45339 * 18 16 14 20 20 C 1.54998 * 102.09046 * 20.88377 * 19 18 16 21 21 H 1.09002 * 110.61639 * 81.63687 * 20 19 18 22 22 C 1.50702 * 110.61690 * 204.47150 * 20 19 18 23 23 C 1.38234 * 119.99471 * 84.72885 * 22 20 19 24 24 C 1.38244 * 119.99631 * 179.80779 * 23 22 20 25 25 C 1.38234 * 120.00092 * 0.42112 * 24 23 22 26 26 C 1.38233 * 119.99608 * 359.81014 * 25 24 23 27 27 C 1.38230 * 120.00244 * 264.99832 * 22 20 19 28 28 O 1.43741 * 109.88403 * 182.83358 * 16 14 13 29 29 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 38 38 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 39 39 H 1.08995 * 110.48983 * 240.13721 * 18 16 14 40 40 H 1.09006 * 110.48405 * 2.77972 * 18 16 14 41 41 H 1.08999 * 110.90919 * 139.07951 * 19 18 16 42 42 H 1.09003 * 110.91105 * 262.68799 * 19 18 16 43 43 H 1.08001 * 120.00473 * 359.97438 * 23 22 20 44 44 H 1.08002 * 120.00055 * 180.20858 * 24 23 22 45 45 H 1.07990 * 120.00360 * 179.79309 * 25 24 23 46 46 H 1.08004 * 119.99880 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00147 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.8178 -1.1115 4.0022 10 1 1.8417 -0.4092 5.2204 11 1 1.8384 -2.5124 4.0138 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 1 0.2873 0.2846 -4.8716 18 6 1.9831 1.6332 -4.9741 19 6 2.7325 1.6535 -6.3286 20 6 2.0396 0.5016 -7.1002 21 1 1.1025 0.8432 -7.5397 22 6 2.9533 -0.0490 -8.1647 23 6 3.8869 -1.0159 -7.8416 24 6 4.7224 -1.5238 -8.8189 25 6 4.6301 -1.0586 -10.1173 26 6 3.6998 -0.0882 -10.4393 27 6 2.8616 0.4169 -9.4629 28 8 1.7946 -0.4887 -6.0785 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7164 1.1668 3.4844 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7489 -1.2492 38 1 0.9938 0.7578 -2.3564 39 1 1.1967 2.3879 -4.9618 40 1 2.6792 1.7929 -4.1506 41 1 2.5879 2.6057 -6.8389 42 1 3.7934 1.4454 -6.1894 43 1 3.9618 -1.3765 -6.8263 44 1 5.4496 -2.2817 -8.5673 45 1 5.2850 -1.4529 -10.8801 46 1 3.6279 0.2756 -11.4536 47 1 2.1348 1.1752 -9.7145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:17 Heat of formation + Delta-G solvation = -65.328393 kcal Electronic energy + Delta-G solvation = -26442.511987 eV Core-core repulsion = 22782.759415 eV Total energy + Delta-G solvation = -3659.752572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49578 -39.23596 -38.07155 -36.26387 -33.40828 -32.55014 -32.10580 -31.01664 -30.80169 -28.56418 -25.75041 -25.67954 -25.06346 -23.71638 -22.70187 -22.16774 -20.98078 -20.05460 -18.82933 -17.65835 -16.90243 -16.49843 -16.08928 -15.79275 -15.40199 -15.04355 -14.68408 -14.38196 -14.23666 -14.05494 -13.86884 -13.48463 -13.29795 -12.94180 -12.92744 -12.76834 -12.21169 -12.14332 -11.88918 -11.74275 -11.38139 -11.24488 -11.18628 -11.10164 -11.00179 -10.85179 -10.74187 -10.40378 -10.24388 -10.17036 -9.65519 -9.46278 -9.11712 -9.06712 -8.87125 -8.80656 -8.46873 -8.32710 -6.03515 -4.13500 1.12946 1.26359 2.96792 3.21667 3.29500 3.33707 3.37974 3.62396 4.00519 4.31767 4.39307 4.52236 4.66985 4.71801 4.81860 4.91999 4.96973 5.02710 5.07026 5.23273 5.32618 5.37823 5.38241 5.53440 5.55378 5.75244 5.80039 5.87129 5.93477 6.19687 6.27168 6.31089 6.37684 6.40400 6.48637 6.74412 6.75888 6.79648 6.84295 6.92312 6.99663 7.01049 7.33422 7.53465 7.67889 7.99067 8.02195 8.13706 8.36965 8.68257 8.86986 9.52283 10.97861 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002428 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.750695 B =11527.743923 C =11986.087115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.714 5.714 14 C 0.504 3.496 15 O -0.533 6.533 16 C 0.059 3.941 17 H 0.093 0.907 18 C -0.148 4.148 19 C -0.141 4.141 20 C 0.114 3.886 21 H 0.082 0.918 22 C -0.083 4.083 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.112 4.112 28 O -0.337 6.337 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.006 0.994 34 H 0.086 0.914 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 4.561 -22.297 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.288 3.712 15 O -0.409 6.409 16 C -0.002 4.002 17 H 0.111 0.889 18 C -0.186 4.186 19 C -0.179 4.179 20 C 0.056 3.944 21 H 0.099 0.901 22 C -0.083 4.083 23 C -0.108 4.108 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.130 4.130 28 O -0.255 6.255 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.939 3.720 -22.226 22.618 hybrid contribution -0.023 0.106 0.947 0.954 sum 1.916 3.826 -21.278 21.704 Atomic orbital electron populations 1.21834 0.97742 0.99236 1.00060 1.18353 0.92815 0.92752 0.90521 1.21833 0.98582 0.98352 1.00088 1.20945 1.31614 1.12047 0.89878 0.92493 1.24878 0.94865 0.94916 0.98848 1.69791 1.36663 1.22683 1.23342 0.86627 0.79258 0.79790 0.82147 1.20284 1.21330 1.20270 1.21727 0.98143 0.95833 0.83194 1.46232 1.52850 1.31950 1.05667 1.20298 0.81371 0.85048 0.84477 1.90683 1.37624 1.25941 1.86653 1.22654 0.99609 0.91575 0.86394 0.88889 1.22964 1.01043 0.95486 0.99080 1.23154 1.01094 0.98810 0.94818 1.21964 0.96284 0.87894 0.88265 0.90065 1.19591 0.97100 0.98074 0.93540 1.21205 0.93806 0.95269 1.00491 1.21230 0.99480 1.00143 0.93183 1.21180 0.98681 0.97449 0.96582 1.21053 0.96429 0.97753 0.99081 1.20888 0.99755 1.00245 0.92093 1.89034 1.88100 1.28931 1.19426 0.89592 0.97504 0.95393 0.95447 0.97516 0.89552 0.92945 0.92711 0.92674 0.76742 0.89404 0.89412 0.89652 0.90000 0.84798 0.85942 0.86217 0.86075 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.88 8.07 37.16 0.30 -2.58 16 4 C -0.51 -13.17 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.81 4.50 -4.05 -0.02 2.80 16 13 N -0.71 -12.46 4.93 -60.30 -0.30 -12.75 16 14 C 0.50 8.88 6.95 -10.99 -0.08 8.81 16 15 O -0.53 -11.68 16.53 -14.02 -0.23 -11.91 16 16 C 0.06 0.79 3.84 -27.31 -0.10 0.68 16 17 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 18 C -0.15 -1.53 6.61 -25.20 -0.17 -1.69 16 19 C -0.14 -1.36 6.57 -24.72 -0.16 -1.53 16 20 C 0.11 1.25 3.55 -26.83 -0.10 1.15 16 21 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 22 C -0.08 -0.93 5.09 -104.63 -0.53 -1.47 16 23 C -0.09 -1.12 9.38 -39.58 -0.37 -1.49 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 26 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.11 -1.03 9.71 -39.59 -0.38 -1.42 16 28 O -0.34 -4.97 9.48 -54.81 -0.52 -5.48 16 29 H 0.09 2.11 6.08 -51.93 -0.32 1.79 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 34 H 0.09 2.11 6.06 -51.93 -0.31 1.79 16 35 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.40 6.10 6.16 -40.82 -0.25 5.84 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.00 7.69 -51.93 -0.40 0.61 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.13 1.92 7.51 -52.49 -0.39 1.53 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -30.15 375.98 -10.25 -40.41 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.42 Total: 5.89 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.95 Total: -14.60 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.22 Total: -35.60 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.75 Total: -17.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.15 -10.25 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.922 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds