Wall clock time and date at job start Tue Mar 31 2020 12:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00482 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.87219 * 304.00102 * 16 14 13 18 18 C 1.54102 * 109.87880 * 65.00200 * 16 14 13 19 19 C 1.54808 * 104.18966 * 121.45339 * 18 16 14 20 20 C 1.54998 * 102.09046 * 20.88377 * 19 18 16 21 21 H 1.09002 * 110.61639 * 81.63687 * 20 19 18 22 22 C 1.50702 * 110.61690 * 204.47150 * 20 19 18 23 23 C 1.38234 * 119.99471 * 84.72885 * 22 20 19 24 24 C 1.38244 * 119.99631 * 179.80779 * 23 22 20 25 25 C 1.38234 * 120.00092 * 0.42112 * 24 23 22 26 26 C 1.38233 * 119.99608 * 359.81014 * 25 24 23 27 27 C 1.38230 * 120.00244 * 264.99832 * 22 20 19 28 28 O 1.43741 * 109.88403 * 182.83358 * 16 14 13 29 29 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 38 38 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 39 39 H 1.08995 * 110.48983 * 240.13721 * 18 16 14 40 40 H 1.09006 * 110.48405 * 2.77972 * 18 16 14 41 41 H 1.08999 * 110.90919 * 139.07951 * 19 18 16 42 42 H 1.09003 * 110.91105 * 262.68799 * 19 18 16 43 43 H 1.08001 * 120.00473 * 359.97438 * 23 22 20 44 44 H 1.08002 * 120.00055 * 180.20858 * 24 23 22 45 45 H 1.07990 * 120.00360 * 179.79309 * 25 24 23 46 46 H 1.08004 * 119.99880 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00147 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.8178 -1.1115 4.0022 10 1 1.8417 -0.4092 5.2204 11 1 1.8384 -2.5124 4.0138 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5749 -1.4770 -3.7807 16 6 1.3750 0.2192 -4.8999 17 1 0.2873 0.2846 -4.8716 18 6 1.9831 1.6332 -4.9741 19 6 2.7325 1.6535 -6.3286 20 6 2.0396 0.5016 -7.1002 21 1 1.1025 0.8432 -7.5397 22 6 2.9533 -0.0490 -8.1647 23 6 3.8869 -1.0159 -7.8416 24 6 4.7224 -1.5238 -8.8189 25 6 4.6301 -1.0586 -10.1173 26 6 3.6998 -0.0882 -10.4393 27 6 2.8616 0.4169 -9.4629 28 8 1.7946 -0.4887 -6.0785 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7164 1.1668 3.4844 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7489 -1.2492 38 1 0.9938 0.7578 -2.3564 39 1 1.1967 2.3879 -4.9618 40 1 2.6792 1.7929 -4.1506 41 1 2.5879 2.6057 -6.8389 42 1 3.7934 1.4454 -6.1894 43 1 3.9618 -1.3765 -6.8263 44 1 5.4496 -2.2817 -8.5673 45 1 5.2850 -1.4529 -10.8801 46 1 3.6279 0.2756 -11.4536 47 1 2.1348 1.1752 -9.7145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:17 Heat of formation + Delta-G solvation = -81.336816 kcal Electronic energy + Delta-G solvation = -26443.206164 eV Core-core repulsion = 22782.759415 eV Total energy + Delta-G solvation = -3660.446749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55021 -40.32400 -39.15848 -37.99227 -35.08679 -33.40140 -33.27706 -32.38720 -31.75550 -29.57582 -27.55765 -27.44196 -26.71560 -24.81064 -23.44865 -23.08314 -21.76238 -21.42440 -20.62407 -18.83832 -17.88564 -17.70594 -17.40446 -17.19451 -16.60008 -16.37120 -16.13847 -15.73592 -15.29848 -15.10264 -14.79471 -14.68170 -14.49238 -14.40132 -14.21593 -14.00556 -13.72145 -13.21448 -13.11145 -12.92773 -12.76928 -12.69481 -12.63659 -12.56214 -12.24822 -12.14264 -11.99768 -11.86732 -11.79770 -11.48819 -11.29742 -11.18194 -10.73689 -10.47050 -10.40073 -9.98498 -9.82028 -9.62229 -8.03042 -6.18450 0.38631 0.50264 1.43085 1.44376 1.50871 1.60125 2.01496 2.45788 2.78792 3.05763 3.20415 3.43375 3.64351 3.83912 3.92748 3.99424 4.11358 4.20367 4.23931 4.32994 4.40478 4.44920 4.49731 4.60185 4.65880 4.70999 4.79264 4.85952 4.97748 4.98278 5.06025 5.08073 5.10688 5.10988 5.17316 5.19417 5.34881 5.53224 5.56420 5.58753 5.63388 5.66788 5.67700 5.91744 6.11419 6.15960 6.21257 6.43266 6.64663 6.84919 7.28628 7.48909 8.95566 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002428 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.750695 B =11527.743923 C =11986.087115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.149 3.851 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.585 6.585 16 C 0.064 3.936 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.135 4.135 20 C 0.109 3.891 21 H 0.111 0.889 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.137 4.137 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.110 4.110 28 O -0.373 6.373 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.261 0.739 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.412 0.588 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 6.797 -24.828 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.025 3.975 13 N -0.356 5.356 14 C 0.286 3.714 15 O -0.465 6.465 16 C 0.003 3.997 17 H 0.142 0.858 18 C -0.180 4.180 19 C -0.173 4.173 20 C 0.052 3.948 21 H 0.128 0.872 22 C -0.098 4.098 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.128 4.128 28 O -0.292 6.292 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.249 0.751 39 H 0.146 0.854 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.162 0.838 46 H 0.171 0.829 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.736 5.989 -24.763 25.488 hybrid contribution 0.384 -0.629 1.665 1.821 sum 1.120 5.360 -23.098 23.738 Atomic orbital electron populations 1.21681 0.96944 0.98675 1.00619 1.18352 0.93375 0.93147 0.89970 1.21672 0.97857 0.97646 1.00670 1.21237 1.31904 1.12110 0.91697 0.94047 1.25424 0.95172 0.95599 1.00846 1.69887 1.36861 1.23091 1.23697 0.85848 0.78604 0.78805 0.79721 1.20374 1.20632 1.20413 1.21265 0.96867 0.95038 0.84306 1.45999 1.52818 1.32051 1.04765 1.21255 0.80113 0.84378 0.85630 1.90661 1.39948 1.28440 1.87411 1.22761 1.01075 0.92162 0.83745 0.85816 1.23030 1.01843 0.94273 0.98828 1.23151 0.99559 0.99925 0.94662 1.22265 0.97569 0.87372 0.87564 0.87171 1.19793 0.96988 0.98114 0.94888 1.21076 0.96083 0.97345 0.99370 1.21381 0.99559 1.00621 0.93925 1.21501 0.99137 0.97385 0.96131 1.21496 0.95316 0.96785 1.00456 1.21228 1.00185 1.00422 0.90982 1.89019 1.88426 1.31166 1.20541 0.91762 0.94067 0.96479 0.96456 0.93991 0.91758 0.92953 0.94634 0.94707 0.75072 0.85374 0.90882 0.86192 0.92276 0.88423 0.85586 0.83798 0.82939 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.23 8.07 71.98 0.58 -4.65 16 4 C -0.53 -28.24 8.01 25.60 0.21 -28.03 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.56 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.40 9.35 21.45 0.20 -47.19 16 8 Si 0.94 42.76 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.15 6.45 4.50 86.38 0.39 6.84 16 13 N -0.70 -24.12 4.93 -463.09 -2.28 -26.40 16 14 C 0.50 17.71 6.95 87.66 0.61 18.32 16 15 O -0.58 -26.95 16.53 15.68 0.26 -26.69 16 16 C 0.06 1.59 3.84 30.22 0.12 1.70 16 17 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 18 C -0.14 -2.52 6.61 31.58 0.21 -2.32 16 19 C -0.14 -2.30 6.57 31.89 0.21 -2.09 16 20 C 0.11 2.18 3.55 30.53 0.11 2.29 16 21 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 22 C -0.10 -2.12 5.09 -19.87 -0.10 -2.22 16 23 C -0.12 -3.17 9.38 22.27 0.21 -2.96 16 24 C -0.14 -2.97 10.05 22.27 0.22 -2.75 16 25 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 26 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 27 C -0.11 -1.72 9.71 22.27 0.22 -1.50 16 28 O -0.37 -10.90 9.48 -130.26 -1.23 -12.13 16 29 H 0.06 3.12 6.08 -2.39 -0.01 3.10 16 30 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 34 H 0.06 3.11 6.06 -2.39 -0.01 3.09 16 35 H 0.26 13.30 8.31 -92.70 -0.77 12.53 16 36 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 11.65 6.16 -92.71 -0.57 11.07 16 39 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.54 7.69 -2.38 -0.02 1.52 16 41 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 43 H 0.10 3.19 7.51 -2.91 -0.02 3.17 16 44 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 45 H 0.14 1.59 8.06 -2.92 -0.02 1.57 16 46 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -69.46 375.98 3.77 -65.69 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.39 Total: 23.01 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.41 Total: -21.06 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -2.08 Total: -73.60 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.98 Total: -38.83 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -69.46 3.77 -65.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.645 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds