Wall clock time and date at job start Tue Mar 31 2020 12:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46669 * 2 1 4 4 C 1.53004 * 109.46669 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47226 * 304.99418 * 4 3 2 6 6 C 1.53005 * 109.46970 * 184.99812 * 4 3 2 7 7 N 1.46497 * 109.47169 * 64.99964 * 4 3 2 8 8 C 1.46499 * 120.00413 * 60.00098 * 7 4 3 9 9 C 1.34779 * 119.99788 * 240.00049 * 7 4 3 10 10 O 1.21721 * 119.99740 * 359.97438 * 9 7 4 11 11 C 1.46259 * 119.99894 * 180.02562 * 9 7 4 12 12 C 1.35020 * 119.99539 * 173.22494 * 11 9 7 13 13 C 1.46956 * 120.00393 * 348.67801 * 12 11 9 14 14 C 1.40033 * 120.10050 * 316.39664 * 13 12 11 15 15 C 1.37592 * 119.89573 * 179.69969 * 14 13 12 16 16 C 1.39184 * 120.10377 * 0.59661 * 15 14 13 17 17 O 1.35569 * 119.90037 * 179.69869 * 16 15 14 18 18 C 1.34775 * 117.00124 * 174.34122 * 17 16 15 19 19 H 1.08002 * 119.99802 * 5.05484 * 18 17 16 20 20 C 1.38719 * 119.99990 * 185.06188 * 18 17 16 21 21 N 1.31503 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99721 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47541 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46911 * 120.00039 * 22 20 18 25 25 H 1.48503 * 109.47368 * 240.00084 * 22 20 18 26 26 C 1.39173 * 120.19737 * 359.68234 * 16 15 14 27 27 C 1.37597 * 120.10621 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47346 * 60.00677 * 1 2 3 29 29 H 1.09001 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47267 * 300.00277 * 1 2 3 31 31 H 1.08996 * 109.47267 * 239.99723 * 2 1 3 32 32 H 1.08997 * 109.46695 * 119.99687 * 2 1 3 33 33 H 1.08996 * 109.47502 * 59.99867 * 3 2 1 34 34 H 1.09003 * 109.46907 * 299.99292 * 3 2 1 35 35 H 1.08999 * 109.47142 * 59.99826 * 6 4 3 36 36 H 1.09000 * 109.47014 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47069 * 300.00175 * 6 4 3 38 38 H 1.08998 * 109.47387 * 89.99562 * 8 7 4 39 39 H 1.09001 * 109.46706 * 329.99477 * 8 7 4 40 40 H 1.09001 * 109.47203 * 210.00561 * 8 7 4 41 41 H 1.07994 * 120.00205 * 353.22353 * 11 9 7 42 42 H 1.08004 * 119.99449 * 168.68114 * 12 11 9 43 43 H 1.08002 * 120.04752 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.95049 * 180.27946 * 15 14 13 45 45 H 0.97000 * 119.99906 * 179.97438 * 21 20 18 46 46 H 1.08010 * 119.94644 * 180.02562 * 26 16 15 47 47 H 1.07999 * 120.04817 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0800 2.8796 0.1250 7 7 4.0578 0.8590 -1.2527 8 6 3.7034 1.4737 -2.5344 9 6 4.8326 -0.2435 -1.2255 10 8 5.1275 -0.7539 -0.1605 11 6 5.3201 -0.8257 -2.4754 12 6 6.2052 -1.8450 -2.4453 13 6 6.8675 -2.2061 -1.1841 14 6 7.3680 -1.2054 -0.3421 15 6 7.9818 -1.5480 0.8407 16 6 8.1167 -2.8872 1.1948 17 8 8.7277 -3.2203 2.3583 18 6 8.7231 -4.5239 2.7005 19 1 8.3194 -5.2593 2.0203 20 6 9.2368 -4.9211 3.9263 21 7 9.7286 -4.0257 4.7544 22 14 9.2297 -6.7278 4.4008 23 1 8.6268 -7.5256 3.3030 24 1 10.6236 -7.1834 4.6353 25 1 8.4338 -6.9108 5.6411 26 6 7.6260 -3.8854 0.3583 27 6 7.0053 -3.5520 -0.8236 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7170 3.3138 1.0566 36 1 5.1700 2.8795 0.1250 37 1 3.7163 3.4691 -0.7165 38 1 4.4545 2.2172 -2.8008 39 1 2.7294 1.9555 -2.4492 40 1 3.6624 0.7056 -3.3067 41 1 4.9722 -0.4405 -3.4224 42 1 6.4264 -2.3948 -3.3482 43 1 7.2684 -0.1661 -0.6187 44 1 8.3641 -0.7767 1.4929 45 1 10.0874 -4.3033 5.6117 46 1 7.7325 -4.9234 0.6374 47 1 6.6245 -4.3274 -1.4718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490577146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:56 Heat of formation + Delta-G solvation = -16.797790 kcal Electronic energy + Delta-G solvation = -26574.347345 eV Core-core repulsion = 22916.699218 eV Total energy + Delta-G solvation = -3657.648127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08115 -38.81789 -37.23806 -36.05931 -34.11496 -33.05864 -32.15278 -31.31917 -30.08864 -27.95668 -26.94586 -26.76936 -25.43157 -23.69912 -21.92345 -21.69030 -21.12222 -19.79996 -18.45057 -17.86342 -17.41344 -16.80003 -16.03884 -15.53856 -14.79447 -14.62939 -14.46592 -14.29307 -13.97096 -13.75723 -13.48041 -13.38854 -13.28168 -13.11707 -12.87902 -12.80005 -12.51510 -12.36594 -12.24676 -12.11580 -12.03815 -11.67350 -11.52343 -11.28434 -10.98462 -10.89389 -10.83344 -10.69579 -10.61540 -10.56701 -10.38082 -9.43442 -9.32395 -9.12425 -8.67434 -8.54845 -7.86836 -6.82861 -6.43619 -3.99243 1.28053 2.45398 2.73295 3.14191 3.15033 3.16482 3.21487 3.66593 3.99050 4.51746 4.72708 4.87637 4.88234 4.93125 5.00558 5.12694 5.16373 5.22853 5.25875 5.36483 5.38265 5.40872 5.43277 5.51808 5.62016 5.63583 5.69707 5.74159 5.76994 5.88276 5.92324 5.98749 6.08501 6.14144 6.25709 6.29316 6.35310 6.46867 6.61031 6.73408 6.83361 7.06918 7.15514 7.39456 7.47974 7.53351 7.60907 7.95451 8.03417 8.57376 9.02287 9.74725 10.74422 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003026 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.814120 B = 9251.127598 C = 9771.168014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.133 3.867 5 H 0.103 0.897 6 C -0.159 4.159 7 N -0.614 5.614 8 C 0.080 3.920 9 C 0.541 3.459 10 O -0.510 6.510 11 C -0.269 4.269 12 C 0.026 3.974 13 C -0.188 4.188 14 C 0.014 3.986 15 C -0.203 4.203 16 C 0.172 3.828 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 10.741 -14.825 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.165 4.165 4 C 0.030 3.970 5 H 0.121 0.879 6 C -0.217 4.217 7 N -0.350 5.350 8 C -0.063 4.063 9 C 0.333 3.667 10 O -0.387 6.387 11 C -0.289 4.289 12 C 0.007 3.993 13 C -0.189 4.189 14 C -0.005 4.005 15 C -0.222 4.222 16 C 0.117 3.883 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.887 10.600 -13.816 22.273 hybrid contribution -0.219 -0.767 0.038 0.799 sum -14.106 9.833 -13.778 22.034 Atomic orbital electron populations 1.21763 0.96144 1.01496 1.01309 1.21466 0.95224 0.96592 1.02717 1.21967 0.94983 0.97439 1.02081 1.21060 0.93235 0.94520 0.88211 0.87861 1.22111 1.01852 0.95903 1.01817 1.47838 1.52221 1.28491 1.06407 1.21702 1.00405 0.98491 0.85718 1.18494 0.78327 0.79557 0.90317 1.90979 1.56123 1.59749 1.31806 1.22721 1.05634 1.03880 0.96713 1.22347 0.89120 0.91322 0.96554 1.18289 1.09734 0.93437 0.97459 1.20427 0.91769 0.96576 0.91724 1.20000 1.09423 0.93554 0.99215 1.19520 0.89198 0.93013 0.86580 1.83904 1.63277 1.28475 1.31951 1.21442 1.41919 0.80646 1.02532 0.88857 1.25322 0.96261 1.00291 0.94718 1.70032 1.36876 1.33725 1.08841 0.85637 0.78329 0.80433 0.78978 1.19037 1.20136 1.20113 1.20947 1.09050 0.99669 0.97328 1.20734 0.95574 0.94180 0.95529 0.93127 0.92883 0.92923 0.92048 0.91737 0.91111 0.91936 0.91674 0.92186 0.92698 0.93105 0.91547 0.91024 0.86012 0.86193 0.88172 0.86898 0.92036 0.85689 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.31 5.82 -26.73 -0.16 -1.47 16 3 C -0.13 -1.17 4.64 -26.73 -0.12 -1.30 16 4 C 0.13 1.51 2.64 -67.93 -0.18 1.33 16 5 H 0.10 1.51 6.90 -51.93 -0.36 1.15 16 6 C -0.16 -1.50 9.19 37.16 0.34 -1.15 16 7 N -0.61 -7.14 2.21 -175.63 -0.39 -7.53 16 8 C 0.08 0.63 9.25 59.85 0.55 1.18 16 9 C 0.54 8.17 6.64 -13.04 -0.09 8.09 16 10 O -0.51 -10.02 11.50 5.17 0.06 -9.96 16 11 C -0.27 -3.49 9.14 -37.50 -0.34 -3.83 16 12 C 0.03 0.38 9.80 -37.20 -0.36 0.01 16 13 C -0.19 -3.54 4.54 -105.03 -0.48 -4.01 16 14 C 0.01 0.28 6.59 -39.14 -0.26 0.02 16 15 C -0.20 -4.72 9.97 -39.47 -0.39 -5.12 16 16 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 17 O -0.17 -5.16 9.74 0.76 0.01 -5.15 16 18 C -0.39 -11.21 9.48 30.91 0.29 -10.92 16 19 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 22 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.25 -5.80 9.14 -39.47 -0.36 -6.16 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.43 6.34 -51.93 -0.33 0.10 16 40 H 0.07 0.50 6.02 -51.93 -0.31 0.18 16 41 H 0.12 1.16 6.14 -52.49 -0.32 0.83 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.10 1.88 7.02 -52.49 -0.37 1.51 16 44 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 2.87 5.62 -52.48 -0.29 2.57 16 47 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -33.40 379.44 -7.97 -41.38 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.18 Total: 4.93 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.92 Total: -20.34 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.37 Total: -32.49 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.40 -7.97 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490577146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.578 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds