Wall clock time and date at job start Tue Mar 31 2020 12:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46669 * 2 1 4 4 C 1.53004 * 109.46669 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47226 * 304.99418 * 4 3 2 6 6 C 1.53005 * 109.46970 * 184.99812 * 4 3 2 7 7 N 1.46497 * 109.47169 * 64.99964 * 4 3 2 8 8 C 1.46499 * 120.00413 * 60.00098 * 7 4 3 9 9 C 1.34779 * 119.99788 * 240.00049 * 7 4 3 10 10 O 1.21721 * 119.99740 * 359.97438 * 9 7 4 11 11 C 1.46259 * 119.99894 * 180.02562 * 9 7 4 12 12 C 1.35020 * 119.99539 * 173.22494 * 11 9 7 13 13 C 1.46956 * 120.00393 * 348.67801 * 12 11 9 14 14 C 1.40033 * 120.10050 * 316.39664 * 13 12 11 15 15 C 1.37592 * 119.89573 * 179.69969 * 14 13 12 16 16 C 1.39184 * 120.10377 * 0.59661 * 15 14 13 17 17 O 1.35569 * 119.90037 * 179.69869 * 16 15 14 18 18 C 1.34775 * 117.00124 * 174.34122 * 17 16 15 19 19 H 1.08002 * 119.99802 * 5.05484 * 18 17 16 20 20 C 1.38719 * 119.99990 * 185.06188 * 18 17 16 21 21 N 1.31503 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99721 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47541 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46911 * 120.00039 * 22 20 18 25 25 H 1.48503 * 109.47368 * 240.00084 * 22 20 18 26 26 C 1.39173 * 120.19737 * 359.68234 * 16 15 14 27 27 C 1.37597 * 120.10621 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47346 * 60.00677 * 1 2 3 29 29 H 1.09001 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47267 * 300.00277 * 1 2 3 31 31 H 1.08996 * 109.47267 * 239.99723 * 2 1 3 32 32 H 1.08997 * 109.46695 * 119.99687 * 2 1 3 33 33 H 1.08996 * 109.47502 * 59.99867 * 3 2 1 34 34 H 1.09003 * 109.46907 * 299.99292 * 3 2 1 35 35 H 1.08999 * 109.47142 * 59.99826 * 6 4 3 36 36 H 1.09000 * 109.47014 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47069 * 300.00175 * 6 4 3 38 38 H 1.08998 * 109.47387 * 89.99562 * 8 7 4 39 39 H 1.09001 * 109.46706 * 329.99477 * 8 7 4 40 40 H 1.09001 * 109.47203 * 210.00561 * 8 7 4 41 41 H 1.07994 * 120.00205 * 353.22353 * 11 9 7 42 42 H 1.08004 * 119.99449 * 168.68114 * 12 11 9 43 43 H 1.08002 * 120.04752 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.95049 * 180.27946 * 15 14 13 45 45 H 0.97000 * 119.99906 * 179.97438 * 21 20 18 46 46 H 1.08010 * 119.94644 * 180.02562 * 26 16 15 47 47 H 1.07999 * 120.04817 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0800 2.8796 0.1250 7 7 4.0578 0.8590 -1.2527 8 6 3.7034 1.4737 -2.5344 9 6 4.8326 -0.2435 -1.2255 10 8 5.1275 -0.7539 -0.1605 11 6 5.3201 -0.8257 -2.4754 12 6 6.2052 -1.8450 -2.4453 13 6 6.8675 -2.2061 -1.1841 14 6 7.3680 -1.2054 -0.3421 15 6 7.9818 -1.5480 0.8407 16 6 8.1167 -2.8872 1.1948 17 8 8.7277 -3.2203 2.3583 18 6 8.7231 -4.5239 2.7005 19 1 8.3194 -5.2593 2.0203 20 6 9.2368 -4.9211 3.9263 21 7 9.7286 -4.0257 4.7544 22 14 9.2297 -6.7278 4.4008 23 1 8.6268 -7.5256 3.3030 24 1 10.6236 -7.1834 4.6353 25 1 8.4338 -6.9108 5.6411 26 6 7.6260 -3.8854 0.3583 27 6 7.0053 -3.5520 -0.8236 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7170 3.3138 1.0566 36 1 5.1700 2.8795 0.1250 37 1 3.7163 3.4691 -0.7165 38 1 4.4545 2.2172 -2.8008 39 1 2.7294 1.9555 -2.4492 40 1 3.6624 0.7056 -3.3067 41 1 4.9722 -0.4405 -3.4224 42 1 6.4264 -2.3948 -3.3482 43 1 7.2684 -0.1661 -0.6187 44 1 8.3641 -0.7767 1.4929 45 1 10.0874 -4.3033 5.6117 46 1 7.7325 -4.9234 0.6374 47 1 6.6245 -4.3274 -1.4718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490577146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:55 Heat of formation + Delta-G solvation = -36.408272 kcal Electronic energy + Delta-G solvation = -26575.197720 eV Core-core repulsion = 22916.699218 eV Total energy + Delta-G solvation = -3658.498501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28522 -40.55149 -38.62509 -37.50576 -35.04834 -34.59609 -33.92691 -32.27103 -31.83036 -29.52504 -27.71608 -27.55860 -27.41695 -24.96844 -23.56117 -22.94161 -22.33852 -20.90931 -19.93379 -19.44281 -18.77596 -18.42144 -17.16781 -16.56019 -16.41043 -16.20854 -15.82182 -15.57772 -15.54388 -15.13036 -14.88409 -14.63259 -14.46944 -14.35193 -14.04998 -13.81569 -13.72683 -13.60819 -13.56735 -13.22765 -13.08779 -12.87489 -12.79667 -12.60709 -12.36687 -12.30601 -12.15880 -12.08805 -11.75722 -11.65002 -11.52917 -11.24332 -10.93791 -10.56565 -10.36762 -9.74941 -9.35318 -8.55551 -8.49213 -6.16694 -0.00542 0.70762 1.12389 1.32652 1.44044 1.52203 2.16266 2.20920 2.50319 2.86307 3.19856 3.51639 3.66030 3.96613 4.00711 4.05544 4.07203 4.12483 4.15548 4.34997 4.39441 4.43668 4.53717 4.55163 4.58451 4.73572 4.74692 4.78521 4.81699 4.88100 4.98866 5.01768 5.03662 5.08993 5.09712 5.19831 5.24384 5.27502 5.30351 5.31945 5.42807 5.46098 5.66602 5.71486 5.77674 5.87058 6.01738 6.24366 6.59540 6.94530 7.44202 7.76850 8.74155 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003026 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.814120 B = 9251.127598 C = 9771.168014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.128 3.872 5 H 0.057 0.943 6 C -0.151 4.151 7 N -0.605 5.605 8 C 0.069 3.931 9 C 0.524 3.476 10 O -0.570 6.570 11 C -0.234 4.234 12 C 0.004 3.996 13 C -0.159 4.159 14 C 0.017 3.983 15 C -0.222 4.222 16 C 0.128 3.872 17 O -0.232 6.232 18 C -0.416 4.416 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.022 2.978 23 H -0.250 1.250 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.259 4.259 27 C -0.048 4.048 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.321 11.557 -19.526 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.154 4.154 4 C 0.024 3.976 5 H 0.076 0.924 6 C -0.209 4.209 7 N -0.338 5.338 8 C -0.072 4.072 9 C 0.316 3.684 10 O -0.451 6.451 11 C -0.254 4.254 12 C -0.016 4.016 13 C -0.159 4.159 14 C -0.001 4.001 15 C -0.241 4.241 16 C 0.077 3.923 17 O -0.138 6.138 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.841 3.159 23 H -0.174 1.174 24 H -0.189 1.189 25 H -0.193 1.193 26 C -0.278 4.278 27 C -0.066 4.066 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.984 11.483 -18.610 27.688 hybrid contribution 0.415 -0.659 1.125 1.369 sum -16.570 10.823 -17.484 26.408 Atomic orbital electron populations 1.21724 0.94308 1.01668 1.02510 1.21424 0.96796 0.97173 1.00474 1.21909 0.93017 0.96683 1.03835 1.21077 0.94778 0.94806 0.86908 0.92447 1.22046 1.00591 0.94804 1.03478 1.47935 1.50482 1.27283 1.08121 1.22061 1.02027 0.99372 0.83771 1.19120 0.78603 0.80250 0.90440 1.90982 1.58377 1.61793 1.33949 1.23185 1.03429 1.01237 0.97535 1.22593 0.90354 0.92931 0.95694 1.18865 1.06252 0.92538 0.98293 1.20619 0.90759 0.97938 0.90823 1.20165 1.10527 0.92695 1.00728 1.19983 0.91104 0.94544 0.86656 1.83872 1.66544 1.29043 1.34334 1.21933 1.42757 0.80978 1.03477 0.88034 1.26685 0.95435 1.05904 0.94149 1.70183 1.39416 1.36581 1.09737 0.84489 0.78919 0.73555 0.78934 1.17369 1.18948 1.19317 1.21082 1.09470 0.98854 0.98385 1.21173 0.94782 0.95962 0.94660 0.91224 0.93324 0.92352 0.93235 0.95119 0.90186 0.89192 0.90842 0.94087 0.90031 0.91618 0.89437 0.89189 0.80953 0.81388 0.86656 0.88273 0.91753 0.86249 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 71.98 0.71 -1.51 16 2 C -0.12 -2.46 5.82 30.59 0.18 -2.28 16 3 C -0.12 -1.88 4.64 30.59 0.14 -1.74 16 4 C 0.13 2.75 2.64 45.00 0.12 2.87 16 5 H 0.06 1.79 6.90 -2.39 -0.02 1.77 16 6 C -0.15 -2.56 9.19 71.98 0.66 -1.90 16 7 N -0.61 -12.36 2.21 -827.78 -1.83 -14.19 16 8 C 0.07 0.71 9.25 127.77 1.18 1.89 16 9 C 0.52 14.64 6.64 86.33 0.57 15.22 16 10 O -0.57 -22.64 11.50 -4.42 -0.05 -22.69 16 11 C -0.23 -4.87 9.14 23.62 0.22 -4.66 16 12 C 0.00 0.08 9.80 23.81 0.23 0.32 16 13 C -0.16 -5.69 4.54 -20.13 -0.09 -5.78 16 14 C 0.02 0.70 6.59 22.55 0.15 0.85 16 15 C -0.22 -11.15 9.97 22.34 0.22 -10.93 16 16 C 0.13 7.13 6.66 22.72 0.15 7.28 16 17 O -0.23 -15.11 9.74 -20.20 -0.20 -15.31 16 18 C -0.42 -25.76 9.48 67.93 0.64 -25.11 16 19 H 0.10 5.80 5.18 -2.91 -0.02 5.79 16 20 C -0.02 -1.46 5.49 84.86 0.47 -0.99 16 21 N -0.92 -59.12 13.67 21.62 0.30 -58.82 16 22 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 23 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.26 -12.49 9.14 22.34 0.20 -12.29 16 27 C -0.05 -1.84 9.78 22.55 0.22 -1.62 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.00 6.47 -2.39 -0.02 0.98 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.59 6.34 -2.39 -0.02 0.58 16 40 H 0.09 0.63 6.02 -2.39 -0.01 0.61 16 41 H 0.17 1.93 6.14 -2.91 -0.02 1.91 16 42 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.12 4.32 7.02 -2.91 -0.02 4.30 16 44 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 45 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 46 H 0.12 5.76 5.62 -2.91 -0.02 5.75 16 47 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -84.44 379.44 7.19 -77.25 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.96 Total: 27.29 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 5.99 Total: -40.39 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.54 Total: -73.01 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.25 Total: -38.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -84.44 7.19 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490577146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.842 kcal (2) G-P(sol) polarization free energy of solvation -84.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds