Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47087 * 94.14185 * 3 2 1 5 5 N 1.46898 * 109.47360 * 214.14308 * 3 2 1 6 6 C 1.46893 * 111.00206 * 275.00185 * 5 3 2 7 7 C 1.53007 * 109.47040 * 179.97438 * 6 5 3 8 8 H 1.08994 * 109.46720 * 60.00463 * 7 6 5 9 9 O 1.42897 * 109.47322 * 299.99929 * 7 6 5 10 10 C 1.53001 * 109.46648 * 179.97438 * 7 6 5 11 11 O 1.42900 * 109.46781 * 185.00191 * 10 7 6 12 12 C 1.35679 * 117.00140 * 179.97438 * 11 10 7 13 13 C 1.39313 * 119.81709 * 359.72655 * 12 11 10 14 14 C 1.36437 * 120.18482 * 179.75726 * 13 12 11 15 15 C 1.40828 * 119.81022 * 0.51533 * 14 13 12 16 16 C 1.41220 * 120.17951 * 179.71847 * 15 14 13 17 17 H 1.07996 * 119.99968 * 24.56980 * 16 15 14 18 18 C 1.39890 * 120.00023 * 204.57171 * 16 15 14 19 19 N 1.30885 * 119.99852 * 17.93103 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 197.92836 * 18 16 15 21 21 H 1.48508 * 109.46766 * 60.00009 * 20 18 16 22 22 H 1.48496 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47153 * 300.00308 * 20 18 16 24 24 C 1.40834 * 119.64619 * 359.73863 * 15 14 13 25 25 C 1.36441 * 119.80868 * 0.02562 * 24 15 14 26 26 C 1.52998 * 109.46998 * 334.14718 * 3 2 1 27 27 C 1.52996 * 109.47327 * 59.99897 * 26 3 2 28 28 C 1.53005 * 109.46896 * 179.97438 * 26 3 2 29 29 H 4.18741 * 15.03880 * 0.02562 * 4 2 1 30 30 H 1.00903 * 110.99985 * 151.04110 * 5 3 2 31 31 H 1.08995 * 109.47253 * 300.00061 * 6 5 3 32 32 H 1.09008 * 109.47163 * 60.00210 * 6 5 3 33 33 H 0.96699 * 113.99813 * 300.00074 * 9 7 6 34 34 H 1.09000 * 109.47753 * 305.00236 * 10 7 6 35 35 H 1.08999 * 109.47258 * 65.00584 * 10 7 6 36 36 H 1.07997 * 119.90386 * 0.02562 * 13 12 11 37 37 H 1.07997 * 120.09405 * 180.25370 * 14 13 12 38 38 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.10063 * 179.97438 * 24 15 14 40 40 H 1.08001 * 119.91177 * 179.97438 * 25 24 15 41 41 H 1.09002 * 109.46766 * 299.99663 * 26 3 2 42 42 H 1.09002 * 109.47388 * 60.00148 * 27 26 3 43 43 H 1.09005 * 109.46872 * 180.02562 * 27 26 3 44 44 H 1.09001 * 109.47150 * 300.00058 * 27 26 3 45 45 H 1.09005 * 109.47102 * 179.97438 * 28 26 3 46 46 H 1.08996 * 109.47382 * 299.99950 * 28 26 3 47 47 H 1.09002 * 109.46945 * 60.00114 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0750 -1.0250 5 7 3.1352 1.1471 0.7773 6 6 3.1975 2.3577 -0.0524 7 6 3.7096 3.5277 0.7902 8 1 4.7050 3.2948 1.1682 9 8 2.8224 3.7481 1.8885 10 6 3.7750 4.7884 -0.0743 11 8 4.3619 5.8520 0.6783 12 6 4.4947 7.0487 0.0531 13 6 4.0709 7.1918 -1.2663 14 6 4.1963 8.3932 -1.9007 15 6 4.7661 9.4874 -1.2215 16 6 4.9051 10.7329 -1.8725 17 1 4.2563 10.9860 -2.6980 18 6 5.8831 11.6386 -1.4483 19 7 6.8815 11.2253 -0.7097 20 14 5.7644 13.4379 -1.9360 21 1 4.4963 14.0091 -1.4154 22 1 6.9142 14.1829 -1.3634 23 1 5.7876 13.5520 -3.4164 24 6 5.1969 9.3329 0.1104 25 6 5.0599 8.1261 0.7320 26 6 3.1566 -1.2972 0.6290 27 6 2.6471 -2.4913 -0.1806 28 6 4.6866 -1.2968 0.6284 29 1 -1.0500 0.0005 0.0001 30 1 4.0330 0.9463 1.1919 31 1 3.8739 2.1895 -0.8904 32 1 2.2019 2.5909 -0.4302 33 1 1.9164 3.9608 1.6256 34 1 4.3810 4.5916 -0.9586 35 1 2.7679 5.0722 -0.3797 36 1 3.6378 6.3505 -1.7869 37 1 3.8635 8.5036 -2.9221 38 1 7.5599 11.8533 -0.4158 39 1 5.6352 10.1671 0.6381 40 1 5.3901 8.0056 1.7532 41 1 2.7933 -1.3716 1.6540 42 1 3.0104 -2.4169 -1.2056 43 1 3.0105 -3.4159 0.2679 44 1 1.5571 -2.4917 -0.1806 45 1 5.0504 -2.2213 1.0770 46 1 5.0496 -1.2226 -0.3966 47 1 5.0499 -0.4461 1.2050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491383659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -23.292195 kcal Electronic energy + Delta-G solvation = -25228.370930 eV Core-core repulsion = 21570.441185 eV Total energy + Delta-G solvation = -3657.929745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.25578 -38.60730 -37.24546 -36.00261 -33.83605 -33.31161 -32.72031 -30.48736 -29.53302 -28.95732 -27.61728 -26.74064 -24.85082 -23.89499 -22.09675 -20.96876 -20.61650 -20.56656 -18.35044 -17.35600 -17.22576 -16.81806 -16.27557 -15.91834 -15.33151 -15.23171 -15.12112 -14.49903 -14.19545 -13.93495 -13.81516 -13.58935 -13.36299 -13.00914 -12.78163 -12.55680 -12.36889 -12.22371 -12.13026 -11.78932 -11.74227 -11.48421 -11.37462 -11.24324 -11.12246 -10.96655 -10.78654 -10.64528 -10.57436 -10.32701 -9.99347 -9.85175 -9.83417 -9.33039 -9.01526 -8.80760 -7.64215 -7.02994 -6.72145 -4.25377 2.55081 2.63949 2.79154 2.95222 3.08022 3.10421 3.22555 3.59601 3.95165 4.02286 4.26171 4.42260 4.49438 4.54351 4.62301 4.75853 4.89476 4.92978 5.08070 5.18433 5.21158 5.21965 5.29544 5.40935 5.43986 5.46640 5.62027 5.65847 5.67325 5.75585 5.85517 5.89426 6.01872 6.06142 6.23029 6.58995 6.73325 6.97737 7.01301 7.11333 7.18715 7.45771 7.46564 7.55831 7.77034 7.79501 8.00520 8.20669 8.45420 8.65397 8.89971 8.98904 10.22303 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032757 B = 0.001929 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.564524 B =14508.919438 C =14697.998143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.199 3.801 4 H 0.065 0.935 5 N -0.672 5.672 6 C 0.029 3.971 7 C 0.116 3.884 8 H 0.103 0.897 9 O -0.539 6.539 10 C 0.039 3.961 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.088 3.912 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.799 5.799 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.133 4.133 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.146 4.146 28 C -0.155 4.155 29 H 0.215 0.785 30 H 0.351 0.649 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.371 0.629 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.281 0.719 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -21.742 0.840 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.166 4.166 3 C 0.089 3.911 4 H 0.083 0.917 5 N -0.307 5.307 6 C -0.100 4.100 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.343 6.343 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.187 4.187 14 C -0.219 4.219 15 C 0.086 3.914 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.425 5.425 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.153 4.153 25 C -0.138 4.138 26 C -0.113 4.113 27 C -0.204 4.204 28 C -0.212 4.212 29 H 0.232 0.768 30 H 0.174 0.826 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.218 0.782 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.994 -21.665 1.749 22.547 hybrid contribution 0.027 0.767 -1.549 1.729 sum -5.967 -20.898 0.200 21.734 Atomic orbital electron populations 1.24864 0.95833 1.00409 1.01151 1.22786 0.93902 1.00060 0.99841 1.18478 0.85326 0.90839 0.96408 0.91742 1.60191 1.34434 1.01997 1.34070 1.22646 1.01821 0.90789 0.94759 1.21823 0.94894 0.90475 0.87263 0.87903 1.86619 1.23044 1.92492 1.32153 1.23096 0.98096 0.87894 0.94784 1.85886 1.78913 1.17956 1.40508 1.18623 1.08669 0.85126 0.92805 1.20391 1.06036 0.98080 0.94197 1.20549 1.09901 0.92786 0.98621 1.17595 0.90295 0.92237 0.91318 1.19423 1.15176 0.99436 1.15355 0.90605 1.25881 0.93823 1.00886 0.93623 1.69830 1.07858 1.36550 1.28242 0.86378 0.78741 0.81918 0.79717 1.18881 1.20383 1.19122 1.20986 1.03539 0.95852 0.94904 1.19848 1.03012 0.92099 0.98811 1.21239 0.95843 0.93243 1.00954 1.21821 1.01526 0.97173 0.99875 1.21947 0.94529 1.02534 1.02202 0.76803 0.82616 0.93765 0.90333 0.78198 0.92552 0.92890 0.88993 0.88786 0.90858 0.85647 0.88413 0.89775 0.92581 0.92198 0.92260 0.91688 0.92386 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 19.25 29.55 0.57 -1.30 16 2 C -0.17 -1.66 11.35 -37.12 -0.42 -2.08 16 3 C 0.20 1.72 2.10 -70.50 -0.15 1.57 16 4 H 0.06 0.54 7.80 -51.93 -0.40 0.13 16 5 N -0.67 -6.46 6.14 -109.71 -0.67 -7.13 16 6 C 0.03 0.29 5.14 -3.82 -0.02 0.28 16 7 C 0.12 1.46 3.45 -26.73 -0.09 1.37 16 8 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 9 O -0.54 -7.64 13.17 -40.06 -0.53 -8.16 16 10 C 0.04 0.59 4.37 37.16 0.16 0.76 16 11 O -0.32 -6.56 10.09 -23.57 -0.24 -6.80 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 14 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 15 C 0.09 2.36 5.57 -106.80 -0.60 1.77 16 16 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 17 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 18 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 19 N -0.80 -20.78 10.96 55.54 0.61 -20.17 16 20 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 25 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 26 C -0.09 -0.66 2.62 -90.62 -0.24 -0.90 16 27 C -0.15 -0.92 8.94 37.16 0.33 -0.59 16 28 C -0.15 -0.90 8.96 37.16 0.33 -0.57 16 29 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 30 H 0.35 3.05 6.17 -39.29 -0.24 2.80 16 31 H 0.04 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.08 0.81 7.98 -51.92 -0.41 0.39 16 33 H 0.37 4.24 9.05 45.56 0.41 4.66 16 34 H 0.06 0.83 7.63 -51.93 -0.40 0.43 16 35 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 40 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.42 7.23 -51.93 -0.38 0.04 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.35 6.21 -51.93 -0.32 0.03 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -30.43 390.35 -8.83 -39.25 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.57 Total: 11.14 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.28 Total: -27.74 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: -0.07 Total: -27.31 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.77 Total: -14.96 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.43 -8.83 -39.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491383659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.960 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds