Wall clock time and date at job start Tue Mar 31 2020 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47087 * 94.14185 * 3 2 1 5 5 N 1.46898 * 109.47360 * 214.14308 * 3 2 1 6 6 C 1.46893 * 111.00206 * 275.00185 * 5 3 2 7 7 C 1.53007 * 109.47040 * 179.97438 * 6 5 3 8 8 H 1.08994 * 109.46720 * 60.00463 * 7 6 5 9 9 O 1.42897 * 109.47322 * 299.99929 * 7 6 5 10 10 C 1.53001 * 109.46648 * 179.97438 * 7 6 5 11 11 O 1.42900 * 109.46781 * 185.00191 * 10 7 6 12 12 C 1.35679 * 117.00140 * 179.97438 * 11 10 7 13 13 C 1.39313 * 119.81709 * 359.72655 * 12 11 10 14 14 C 1.36437 * 120.18482 * 179.75726 * 13 12 11 15 15 C 1.40828 * 119.81022 * 0.51533 * 14 13 12 16 16 C 1.41220 * 120.17951 * 179.71847 * 15 14 13 17 17 H 1.07996 * 119.99968 * 24.56980 * 16 15 14 18 18 C 1.39890 * 120.00023 * 204.57171 * 16 15 14 19 19 N 1.30885 * 119.99852 * 17.93103 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 197.92836 * 18 16 15 21 21 H 1.48508 * 109.46766 * 60.00009 * 20 18 16 22 22 H 1.48496 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47153 * 300.00308 * 20 18 16 24 24 C 1.40834 * 119.64619 * 359.73863 * 15 14 13 25 25 C 1.36441 * 119.80868 * 0.02562 * 24 15 14 26 26 C 1.52998 * 109.46998 * 334.14718 * 3 2 1 27 27 C 1.52996 * 109.47327 * 59.99897 * 26 3 2 28 28 C 1.53005 * 109.46896 * 179.97438 * 26 3 2 29 29 H 4.18741 * 15.03880 * 0.02562 * 4 2 1 30 30 H 1.00903 * 110.99985 * 151.04110 * 5 3 2 31 31 H 1.08995 * 109.47253 * 300.00061 * 6 5 3 32 32 H 1.09008 * 109.47163 * 60.00210 * 6 5 3 33 33 H 0.96699 * 113.99813 * 300.00074 * 9 7 6 34 34 H 1.09000 * 109.47753 * 305.00236 * 10 7 6 35 35 H 1.08999 * 109.47258 * 65.00584 * 10 7 6 36 36 H 1.07997 * 119.90386 * 0.02562 * 13 12 11 37 37 H 1.07997 * 120.09405 * 180.25370 * 14 13 12 38 38 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.10063 * 179.97438 * 24 15 14 40 40 H 1.08001 * 119.91177 * 179.97438 * 25 24 15 41 41 H 1.09002 * 109.46766 * 299.99663 * 26 3 2 42 42 H 1.09002 * 109.47388 * 60.00148 * 27 26 3 43 43 H 1.09005 * 109.46872 * 180.02562 * 27 26 3 44 44 H 1.09001 * 109.47150 * 300.00058 * 27 26 3 45 45 H 1.09005 * 109.47102 * 179.97438 * 28 26 3 46 46 H 1.08996 * 109.47382 * 299.99950 * 28 26 3 47 47 H 1.09002 * 109.46945 * 60.00114 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0750 -1.0250 5 7 3.1352 1.1471 0.7773 6 6 3.1975 2.3577 -0.0524 7 6 3.7096 3.5277 0.7902 8 1 4.7050 3.2948 1.1682 9 8 2.8224 3.7481 1.8885 10 6 3.7750 4.7884 -0.0743 11 8 4.3619 5.8520 0.6783 12 6 4.4947 7.0487 0.0531 13 6 4.0709 7.1918 -1.2663 14 6 4.1963 8.3932 -1.9007 15 6 4.7661 9.4874 -1.2215 16 6 4.9051 10.7329 -1.8725 17 1 4.2563 10.9860 -2.6980 18 6 5.8831 11.6386 -1.4483 19 7 6.8815 11.2253 -0.7097 20 14 5.7644 13.4379 -1.9360 21 1 4.4963 14.0091 -1.4154 22 1 6.9142 14.1829 -1.3634 23 1 5.7876 13.5520 -3.4164 24 6 5.1969 9.3329 0.1104 25 6 5.0599 8.1261 0.7320 26 6 3.1566 -1.2972 0.6290 27 6 2.6471 -2.4913 -0.1806 28 6 4.6866 -1.2968 0.6284 29 1 -1.0500 0.0005 0.0001 30 1 4.0330 0.9463 1.1919 31 1 3.8739 2.1895 -0.8904 32 1 2.2019 2.5909 -0.4302 33 1 1.9164 3.9608 1.6256 34 1 4.3810 4.5916 -0.9586 35 1 2.7679 5.0722 -0.3797 36 1 3.6378 6.3505 -1.7869 37 1 3.8635 8.5036 -2.9221 38 1 7.5599 11.8533 -0.4158 39 1 5.6352 10.1671 0.6381 40 1 5.3901 8.0056 1.7532 41 1 2.7933 -1.3716 1.6540 42 1 3.0104 -2.4169 -1.2056 43 1 3.0105 -3.4159 0.2679 44 1 1.5571 -2.4917 -0.1806 45 1 5.0504 -2.2213 1.0770 46 1 5.0496 -1.2226 -0.3966 47 1 5.0499 -0.4461 1.2050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491383659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:57 Heat of formation + Delta-G solvation = -42.316879 kcal Electronic energy + Delta-G solvation = -25229.195902 eV Core-core repulsion = 21570.441185 eV Total energy + Delta-G solvation = -3658.754718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68207 -39.60730 -38.52395 -37.48372 -35.18470 -34.57117 -33.39549 -31.96808 -31.15478 -30.68351 -28.09727 -27.72357 -26.56389 -24.94317 -23.27982 -22.48535 -22.26322 -21.43758 -19.26283 -18.98189 -18.73398 -17.85005 -17.43181 -17.07539 -16.85780 -16.10573 -15.95364 -15.76073 -15.61973 -15.52354 -14.88751 -14.61764 -14.35513 -14.16355 -14.05244 -13.87772 -13.62427 -13.47336 -13.10587 -13.03958 -13.00259 -12.78785 -12.62664 -12.38386 -12.35355 -12.02496 -11.89732 -11.77651 -11.70896 -11.60208 -11.34175 -11.20666 -11.04550 -10.87616 -10.81439 -9.57043 -9.52465 -8.93158 -8.59868 -6.23085 0.94909 1.01966 1.39629 1.50631 1.54738 1.82939 1.94480 2.22599 2.42833 2.72345 3.24744 3.47308 3.54271 3.69643 3.86292 3.90181 3.95978 3.99496 4.06560 4.25655 4.27963 4.31050 4.36247 4.44705 4.45877 4.61949 4.69154 4.77014 4.86057 4.92359 4.95416 5.00879 5.06656 5.15821 5.21058 5.21145 5.27826 5.34928 5.37696 5.57779 5.63882 5.87789 5.89422 6.05153 6.25752 6.33140 6.55986 6.77311 6.79170 6.84789 6.94572 7.09582 8.36615 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032757 B = 0.001929 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.564524 B =14508.919438 C =14697.998143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.199 3.801 4 H 0.070 0.930 5 N -0.681 5.681 6 C 0.041 3.959 7 C 0.125 3.875 8 H 0.100 0.900 9 O -0.558 6.558 10 C 0.030 3.970 11 O -0.330 6.330 12 C 0.000 4.000 13 C -0.165 4.165 14 C -0.208 4.208 15 C 0.054 3.946 16 C -0.499 4.499 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.831 5.831 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.153 4.153 25 C -0.134 4.134 26 C -0.090 4.090 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.238 0.762 30 H 0.355 0.645 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.382 0.618 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.288 0.712 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -22.891 0.028 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.196 4.196 3 C 0.090 3.910 4 H 0.087 0.913 5 N -0.317 5.317 6 C -0.088 4.088 7 C 0.065 3.935 8 H 0.118 0.882 9 O -0.364 6.364 10 C -0.046 4.046 11 O -0.246 6.246 12 C -0.044 4.044 13 C -0.183 4.183 14 C -0.228 4.228 15 C 0.052 3.948 16 C -0.529 4.529 17 H 0.095 0.905 18 C -0.181 4.181 19 N -0.458 5.458 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.172 4.172 25 C -0.153 4.153 26 C -0.108 4.108 27 C -0.201 4.201 28 C -0.210 4.210 29 H 0.255 0.745 30 H 0.179 0.821 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.562 -22.847 0.938 23.789 hybrid contribution 0.129 0.925 -1.247 1.558 sum -6.432 -21.922 -0.310 22.848 Atomic orbital electron populations 1.25598 0.96762 0.99613 1.00362 1.23302 0.94809 1.00874 1.00646 1.18546 0.84853 0.91011 0.96610 0.91268 1.60142 1.34873 1.02229 1.34423 1.22478 1.01938 0.89894 0.94538 1.21778 0.94808 0.90049 0.86891 0.88231 1.86589 1.24016 1.92600 1.33220 1.23480 0.98426 0.87209 0.95512 1.85877 1.79235 1.17899 1.41612 1.18689 1.06987 0.85850 0.92861 1.20694 1.05151 0.98477 0.94022 1.20802 1.09628 0.93048 0.99295 1.17961 0.91562 0.93420 0.91861 1.19686 1.16312 1.00536 1.16354 0.90516 1.26755 0.92881 1.05209 0.93300 1.69890 1.08511 1.38269 1.29107 0.85247 0.78903 0.75902 0.79607 1.18596 1.19333 1.18325 1.20906 1.04884 0.96271 0.95188 1.20015 1.03506 0.92330 0.99453 1.21197 0.96612 0.92812 1.00223 1.21796 1.00905 0.97281 1.00115 1.21934 0.93520 1.02942 1.02580 0.74508 0.82121 0.92280 0.90381 0.76989 0.91275 0.91825 0.85376 0.87573 0.90192 0.87227 0.87549 0.90919 0.92131 0.91229 0.93195 0.90895 0.91913 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.44 19.25 74.32 1.43 -2.01 16 2 C -0.20 -3.67 11.35 31.13 0.35 -3.32 16 3 C 0.20 3.14 2.10 43.11 0.09 3.24 16 4 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 5 N -0.68 -11.97 6.14 -501.01 -3.08 -15.05 16 6 C 0.04 0.73 5.14 86.31 0.44 1.18 16 7 C 0.12 2.91 3.45 30.60 0.11 3.02 16 8 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 9 O -0.56 -15.01 13.17 -144.36 -1.90 -16.91 16 10 C 0.03 0.86 4.37 71.98 0.31 1.17 16 11 O -0.33 -13.20 10.09 -85.35 -0.86 -14.06 16 12 C 0.00 0.00 6.71 22.79 0.15 0.15 16 13 C -0.16 -7.24 8.96 22.11 0.20 -7.04 16 14 C -0.21 -10.24 9.74 22.48 0.22 -10.02 16 15 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 16 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 17 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 18 C 0.03 1.66 5.13 85.23 0.44 2.10 16 19 N -0.83 -44.22 10.96 21.82 0.24 -43.98 16 20 Si 0.98 38.59 29.60 68.60 2.03 40.62 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 C -0.15 -8.33 8.64 22.49 0.19 -8.14 16 25 C -0.13 -6.71 9.92 22.11 0.22 -6.49 16 26 C -0.09 -1.15 2.62 -10.79 -0.03 -1.17 16 27 C -0.14 -1.61 8.94 71.98 0.64 -0.96 16 28 C -0.15 -1.52 8.96 71.98 0.64 -0.88 16 29 H 0.24 2.36 7.80 -4.42 -0.03 2.32 16 30 H 0.36 5.61 6.17 -89.69 -0.55 5.06 16 31 H 0.06 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.08 1.42 7.98 -2.38 -0.02 1.40 16 33 H 0.38 8.17 9.05 -74.06 -0.67 7.50 16 34 H 0.07 1.82 7.63 -2.39 -0.02 1.80 16 35 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 36 H 0.13 4.61 6.27 -2.91 -0.02 4.59 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 39 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 40 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.05 0.65 7.23 -2.39 -0.02 0.63 16 45 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.61 6.21 -2.39 -0.01 0.59 16 Total: -1.00 -65.85 390.35 1.69 -64.16 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.25 Total: 38.52 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 5.51 Total: -53.30 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -2.84 Total: -59.03 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -2.76 Total: -30.97 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -65.85 1.69 -64.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491383659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.847 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds