Wall clock time and date at job start Tue Mar 31 2020 12:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46849 * 206.78185 * 3 2 1 5 5 N 1.46895 * 109.46924 * 86.77753 * 3 2 1 6 6 C 1.46905 * 110.99722 * 85.00306 * 5 3 2 7 7 C 1.53003 * 109.47018 * 179.97438 * 6 5 3 8 8 H 1.08994 * 109.47097 * 305.00075 * 7 6 5 9 9 O 1.42902 * 109.47188 * 64.99931 * 7 6 5 10 10 C 1.53002 * 109.47223 * 184.99483 * 7 6 5 11 11 O 1.42895 * 109.47241 * 174.99903 * 10 7 6 12 12 C 1.35681 * 117.00082 * 180.02562 * 11 10 7 13 13 C 1.39311 * 119.81490 * 359.72336 * 12 11 10 14 14 C 1.36433 * 120.18166 * 179.76053 * 13 12 11 15 15 C 1.40832 * 119.81265 * 0.51813 * 14 13 12 16 16 C 1.41220 * 120.17920 * 179.72062 * 15 14 13 17 17 H 1.07991 * 120.00084 * 24.56057 * 16 15 14 18 18 C 1.39893 * 119.99653 * 204.56138 * 16 15 14 19 19 N 1.30886 * 120.00134 * 17.94516 * 18 16 15 20 20 Si 1.86804 * 119.99953 * 197.94193 * 18 16 15 21 21 H 1.48493 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46961 * 120.00522 * 20 18 16 23 23 H 1.48501 * 109.47003 * 240.00302 * 20 18 16 24 24 C 1.40836 * 119.64213 * 359.73478 * 15 14 13 25 25 C 1.36438 * 119.80837 * 0.02562 * 24 15 14 26 26 C 1.53000 * 109.47054 * 326.78182 * 3 2 1 27 27 C 1.52995 * 109.46959 * 180.02562 * 26 3 2 28 28 C 1.53005 * 109.46914 * 299.99738 * 26 3 2 29 29 H 4.18745 * 15.03868 * 0.02562 * 4 2 1 30 30 H 1.00898 * 111.00374 * 208.94878 * 5 3 2 31 31 H 1.09000 * 109.47187 * 299.99466 * 6 5 3 32 32 H 1.09000 * 109.47176 * 59.99688 * 6 5 3 33 33 H 0.96699 * 114.00114 * 59.99885 * 9 7 6 34 34 H 1.08995 * 109.47302 * 295.00307 * 10 7 6 35 35 H 1.09007 * 109.46944 * 55.00297 * 10 7 6 36 36 H 1.07998 * 119.91069 * 0.02600 * 13 12 11 37 37 H 1.07996 * 120.09532 * 180.25655 * 14 13 12 38 38 H 0.96990 * 119.99887 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.09412 * 179.97438 * 24 15 14 40 40 H 1.08002 * 119.90409 * 179.97438 * 25 24 15 41 41 H 1.08995 * 109.47044 * 59.99541 * 26 3 2 42 42 H 1.09000 * 109.47214 * 299.99720 * 27 26 3 43 43 H 1.09007 * 109.47036 * 60.00038 * 27 26 3 44 44 H 1.09001 * 109.46828 * 179.97438 * 27 26 3 45 45 H 1.09003 * 109.46918 * 60.00519 * 28 26 3 46 46 H 1.09001 * 109.47202 * 180.02562 * 28 26 3 47 47 H 1.08997 * 109.47056 * 300.00312 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.9182 0.4631 5 7 3.1357 -0.0770 -1.3828 6 6 3.1980 1.2570 -1.9948 7 6 3.7118 1.1358 -3.4309 8 1 4.6677 0.6122 -3.4318 9 8 2.7671 0.4039 -4.2146 10 6 3.8949 2.5331 -4.0268 11 8 4.4838 2.4242 -5.3242 12 6 4.7155 3.5809 -5.9945 13 6 4.3746 4.7994 -5.4117 14 6 4.6087 5.9673 -6.0770 15 6 5.1867 5.9380 -7.3609 16 6 5.4270 7.1419 -8.0590 17 1 5.5533 8.0658 -7.5144 18 6 5.5013 7.1374 -9.4559 19 7 5.0134 6.1299 -10.1341 20 14 6.2969 8.5696 -10.3534 21 1 6.7666 9.5735 -9.3652 22 1 7.4524 8.0770 -11.1454 23 1 5.3045 9.1964 -11.2631 24 6 5.5234 4.7015 -7.9451 25 6 5.2872 3.5430 -7.2643 26 6 3.1566 -1.2059 0.7902 27 6 4.6866 -1.2048 0.7908 28 6 2.6466 -1.1251 2.2305 29 1 -1.0500 -0.0010 0.0000 30 1 4.0336 -0.5355 -1.4233 31 1 2.2024 1.7007 -2.0011 32 1 3.8741 1.8896 -1.4196 33 1 1.8918 0.8125 -4.2583 34 1 2.9249 3.0235 -4.1080 35 1 4.5464 3.1212 -3.3803 36 1 3.9277 4.8200 -4.4287 37 1 4.3477 6.9114 -5.6221 38 1 5.0646 6.1271 -11.1026 39 1 5.9666 4.6705 -8.9295 40 1 5.5445 2.5939 -7.7110 41 1 2.7936 -2.1234 0.3272 42 1 5.0503 -1.2622 -0.2351 43 1 5.0491 -0.2872 1.2541 44 1 5.0503 -2.0642 1.3541 45 1 1.5566 -1.1256 2.2305 46 1 3.0107 -1.9844 2.7937 47 1 3.0095 -0.2075 2.6935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491383671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:09 Heat of formation + Delta-G solvation = -23.329470 kcal Electronic energy + Delta-G solvation = -25225.649327 eV Core-core repulsion = 21567.717966 eV Total energy + Delta-G solvation = -3657.931362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.25891 -38.61017 -37.25081 -36.00507 -33.85246 -33.31360 -32.72121 -30.48262 -29.53382 -28.95989 -27.62060 -26.74076 -24.85310 -23.90030 -22.11039 -20.97129 -20.62065 -20.56954 -18.34785 -17.36087 -17.23912 -16.82180 -16.27509 -15.89816 -15.33623 -15.24056 -15.12249 -14.50743 -14.19643 -13.93696 -13.80741 -13.59167 -13.38473 -13.01526 -12.78910 -12.56083 -12.34742 -12.22843 -12.13378 -11.80241 -11.73472 -11.48165 -11.39208 -11.24647 -11.15964 -10.95095 -10.78720 -10.60519 -10.59989 -10.32799 -9.98417 -9.88261 -9.80314 -9.33636 -9.02333 -8.80896 -7.64501 -7.03200 -6.72343 -4.25536 2.55391 2.64183 2.76863 2.94915 3.08799 3.13865 3.20339 3.59613 3.95194 4.02212 4.25961 4.41961 4.48902 4.53264 4.61820 4.75357 4.90730 4.92632 5.07603 5.17375 5.20775 5.21693 5.29214 5.40652 5.43840 5.46048 5.60748 5.65451 5.67207 5.75528 5.85294 5.89163 6.01725 6.05854 6.22806 6.58876 6.73097 6.97543 7.00644 7.11148 7.18610 7.46053 7.46384 7.55661 7.76894 7.79236 8.00722 8.20451 8.45284 8.65442 8.89928 8.98690 10.22113 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.001919 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.188433 B =14588.760143 C =14623.237866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.199 3.801 4 H 0.065 0.935 5 N -0.673 5.673 6 C 0.030 3.970 7 C 0.116 3.884 8 H 0.103 0.897 9 O -0.540 6.540 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.087 3.913 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.798 5.798 20 Si 0.907 3.093 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.155 4.155 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.351 0.649 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.372 0.628 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.280 0.720 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -11.501 19.414 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C 0.090 3.910 4 H 0.083 0.917 5 N -0.308 5.308 6 C -0.100 4.100 7 C 0.056 3.944 8 H 0.121 0.879 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.187 4.187 14 C -0.218 4.218 15 C 0.085 3.915 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.731 3.269 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.201 1.201 24 C -0.153 4.153 25 C -0.138 4.138 26 C -0.113 4.113 27 C -0.212 4.212 28 C -0.204 4.204 29 H 0.232 0.768 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.218 0.782 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.829 -12.311 18.753 22.758 hybrid contribution 0.208 1.747 0.189 1.770 sum -3.621 -10.564 18.942 21.989 Atomic orbital electron populations 1.24866 0.95836 1.01159 1.00353 1.22782 0.93900 0.99998 0.99944 1.18477 0.85333 0.98236 0.88986 0.91738 1.60211 1.34348 1.19909 1.16290 1.22655 1.01807 0.90136 0.95360 1.21821 0.93672 0.91285 0.87632 0.87880 1.86626 1.23890 1.51518 1.72359 1.23103 0.98053 0.96998 0.85746 1.85886 1.78696 1.30282 1.28393 1.18623 1.08920 0.83505 0.94172 1.20390 1.06162 0.92919 0.99236 1.20551 1.07453 0.95578 0.98253 1.17607 0.89466 0.93391 0.91027 1.19485 1.43699 0.95079 0.91053 0.90532 1.25887 0.93070 0.97125 0.98166 1.69843 1.33315 1.30603 1.08666 0.86289 0.79585 0.81485 0.79508 1.18500 1.19738 1.20078 1.20987 1.02885 0.90959 1.00462 1.19846 1.03287 0.98168 0.92464 1.21240 0.95839 0.98139 0.96075 1.21946 0.94533 1.02555 1.02174 1.21821 1.01530 1.01969 0.95072 0.76799 0.82661 0.90276 0.93790 0.78178 0.92869 0.92570 0.88991 0.88780 0.90955 0.85645 0.88409 0.89772 0.92122 0.92389 0.91685 0.92250 0.92198 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.17 -1.67 11.35 -37.12 -0.42 -2.09 16 3 C 0.20 1.72 2.10 -70.50 -0.15 1.58 16 4 H 0.07 0.54 7.80 -51.93 -0.40 0.13 16 5 N -0.67 -6.48 6.22 -109.70 -0.68 -7.16 16 6 C 0.03 0.30 5.11 -3.82 -0.02 0.28 16 7 C 0.12 1.47 3.43 -26.73 -0.09 1.38 16 8 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 9 O -0.54 -7.76 13.25 -40.09 -0.53 -8.29 16 10 C 0.04 0.59 4.36 37.16 0.16 0.75 16 11 O -0.32 -6.55 10.09 -23.60 -0.24 -6.79 16 12 C -0.01 -0.21 6.71 -38.79 -0.26 -0.47 16 13 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 14 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 15 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 16 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 18 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 19 N -0.80 -20.81 10.96 55.55 0.61 -20.20 16 20 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 24 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 25 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 26 C -0.09 -0.66 2.62 -90.62 -0.24 -0.90 16 27 C -0.15 -0.89 8.96 37.16 0.33 -0.56 16 28 C -0.15 -0.92 8.94 37.16 0.33 -0.59 16 29 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 30 H 0.35 3.01 6.17 -39.29 -0.24 2.77 16 31 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 32 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.37 4.31 9.05 45.56 0.41 4.72 16 34 H 0.05 0.79 7.64 -51.93 -0.40 0.40 16 35 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 36 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 40 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.35 6.21 -51.93 -0.32 0.03 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.42 7.23 -51.93 -0.38 0.04 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -30.61 390.46 -8.84 -39.44 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.57 Total: 11.12 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -2.28 Total: -27.72 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: -0.07 Total: -27.36 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.77 Total: -15.08 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.61 -8.84 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491383671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.114 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds