Wall clock time and date at job start Tue Mar 31 2020 12:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46849 * 206.78185 * 3 2 1 5 5 N 1.46895 * 109.46924 * 86.77753 * 3 2 1 6 6 C 1.46905 * 110.99722 * 85.00306 * 5 3 2 7 7 C 1.53003 * 109.47018 * 179.97438 * 6 5 3 8 8 H 1.08994 * 109.47097 * 305.00075 * 7 6 5 9 9 O 1.42902 * 109.47188 * 64.99931 * 7 6 5 10 10 C 1.53002 * 109.47223 * 184.99483 * 7 6 5 11 11 O 1.42895 * 109.47241 * 174.99903 * 10 7 6 12 12 C 1.35681 * 117.00082 * 180.02562 * 11 10 7 13 13 C 1.39311 * 119.81490 * 359.72336 * 12 11 10 14 14 C 1.36433 * 120.18166 * 179.76053 * 13 12 11 15 15 C 1.40832 * 119.81265 * 0.51813 * 14 13 12 16 16 C 1.41220 * 120.17920 * 179.72062 * 15 14 13 17 17 H 1.07991 * 120.00084 * 24.56057 * 16 15 14 18 18 C 1.39893 * 119.99653 * 204.56138 * 16 15 14 19 19 N 1.30886 * 120.00134 * 17.94516 * 18 16 15 20 20 Si 1.86804 * 119.99953 * 197.94193 * 18 16 15 21 21 H 1.48493 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46961 * 120.00522 * 20 18 16 23 23 H 1.48501 * 109.47003 * 240.00302 * 20 18 16 24 24 C 1.40836 * 119.64213 * 359.73478 * 15 14 13 25 25 C 1.36438 * 119.80837 * 0.02562 * 24 15 14 26 26 C 1.53000 * 109.47054 * 326.78182 * 3 2 1 27 27 C 1.52995 * 109.46959 * 180.02562 * 26 3 2 28 28 C 1.53005 * 109.46914 * 299.99738 * 26 3 2 29 29 H 4.18745 * 15.03868 * 0.02562 * 4 2 1 30 30 H 1.00898 * 111.00374 * 208.94878 * 5 3 2 31 31 H 1.09000 * 109.47187 * 299.99466 * 6 5 3 32 32 H 1.09000 * 109.47176 * 59.99688 * 6 5 3 33 33 H 0.96699 * 114.00114 * 59.99885 * 9 7 6 34 34 H 1.08995 * 109.47302 * 295.00307 * 10 7 6 35 35 H 1.09007 * 109.46944 * 55.00297 * 10 7 6 36 36 H 1.07998 * 119.91069 * 0.02600 * 13 12 11 37 37 H 1.07996 * 120.09532 * 180.25655 * 14 13 12 38 38 H 0.96990 * 119.99887 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.09412 * 179.97438 * 24 15 14 40 40 H 1.08002 * 119.90409 * 179.97438 * 25 24 15 41 41 H 1.08995 * 109.47044 * 59.99541 * 26 3 2 42 42 H 1.09000 * 109.47214 * 299.99720 * 27 26 3 43 43 H 1.09007 * 109.47036 * 60.00038 * 27 26 3 44 44 H 1.09001 * 109.46828 * 179.97438 * 27 26 3 45 45 H 1.09003 * 109.46918 * 60.00519 * 28 26 3 46 46 H 1.09001 * 109.47202 * 180.02562 * 28 26 3 47 47 H 1.08997 * 109.47056 * 300.00312 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.9182 0.4631 5 7 3.1357 -0.0770 -1.3828 6 6 3.1980 1.2570 -1.9948 7 6 3.7118 1.1358 -3.4309 8 1 4.6677 0.6122 -3.4318 9 8 2.7671 0.4039 -4.2146 10 6 3.8949 2.5331 -4.0268 11 8 4.4838 2.4242 -5.3242 12 6 4.7155 3.5809 -5.9945 13 6 4.3746 4.7994 -5.4117 14 6 4.6087 5.9673 -6.0770 15 6 5.1867 5.9380 -7.3609 16 6 5.4270 7.1419 -8.0590 17 1 5.5533 8.0658 -7.5144 18 6 5.5013 7.1374 -9.4559 19 7 5.0134 6.1299 -10.1341 20 14 6.2969 8.5696 -10.3534 21 1 6.7666 9.5735 -9.3652 22 1 7.4524 8.0770 -11.1454 23 1 5.3045 9.1964 -11.2631 24 6 5.5234 4.7015 -7.9451 25 6 5.2872 3.5430 -7.2643 26 6 3.1566 -1.2059 0.7902 27 6 4.6866 -1.2048 0.7908 28 6 2.6466 -1.1251 2.2305 29 1 -1.0500 -0.0010 0.0000 30 1 4.0336 -0.5355 -1.4233 31 1 2.2024 1.7007 -2.0011 32 1 3.8741 1.8896 -1.4196 33 1 1.8918 0.8125 -4.2583 34 1 2.9249 3.0235 -4.1080 35 1 4.5464 3.1212 -3.3803 36 1 3.9277 4.8200 -4.4287 37 1 4.3477 6.9114 -5.6221 38 1 5.0646 6.1271 -11.1026 39 1 5.9666 4.6705 -8.9295 40 1 5.5445 2.5939 -7.7110 41 1 2.7936 -2.1234 0.3272 42 1 5.0503 -1.2622 -0.2351 43 1 5.0491 -0.2872 1.2541 44 1 5.0503 -2.0642 1.3541 45 1 1.5566 -1.1256 2.2305 46 1 3.0107 -1.9844 2.7937 47 1 3.0095 -0.2075 2.6935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491383671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:08 Heat of formation + Delta-G solvation = -42.584988 kcal Electronic energy + Delta-G solvation = -25226.484309 eV Core-core repulsion = 21567.717966 eV Total energy + Delta-G solvation = -3658.766344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68466 -39.60817 -38.52926 -37.49056 -35.18689 -34.58868 -33.39975 -31.96697 -31.15384 -30.68251 -28.09533 -27.72384 -26.56577 -24.94452 -23.29323 -22.48947 -22.26465 -21.43961 -19.26763 -18.98195 -18.73861 -17.86752 -17.43220 -17.05547 -16.86446 -16.11214 -15.95408 -15.75671 -15.61036 -15.53929 -14.89036 -14.62154 -14.36561 -14.17383 -14.05567 -13.91093 -13.54110 -13.46400 -13.23982 -13.01015 -12.93979 -12.80443 -12.62119 -12.39397 -12.35519 -12.02427 -11.89831 -11.77499 -11.71102 -11.59130 -11.34791 -11.21276 -11.04900 -10.88980 -10.81352 -9.57129 -9.52449 -8.93247 -8.60113 -6.23287 0.93931 1.01736 1.39778 1.50723 1.55184 1.82849 1.94197 2.22622 2.42638 2.72020 3.25011 3.46952 3.52799 3.69523 3.85975 3.91526 3.95919 3.99370 4.05907 4.25911 4.28014 4.31336 4.35707 4.44464 4.45761 4.60934 4.69378 4.77154 4.85914 4.92565 4.95662 5.01064 5.06693 5.15704 5.21053 5.21140 5.27998 5.35022 5.37871 5.57779 5.63812 5.87694 5.89356 6.05336 6.25655 6.33131 6.56050 6.77056 6.78951 6.83962 6.94566 7.09495 8.36697 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.001919 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.188433 B =14588.760143 C =14623.237866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.199 3.801 4 H 0.070 0.930 5 N -0.683 5.683 6 C 0.042 3.958 7 C 0.125 3.875 8 H 0.101 0.899 9 O -0.561 6.561 10 C 0.030 3.970 11 O -0.331 6.331 12 C 0.000 4.000 13 C -0.165 4.165 14 C -0.208 4.208 15 C 0.054 3.946 16 C -0.498 4.498 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.832 5.832 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.153 4.153 25 C -0.134 4.134 26 C -0.090 4.090 27 C -0.152 4.152 28 C -0.143 4.143 29 H 0.238 0.762 30 H 0.356 0.644 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.382 0.618 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -11.349 21.008 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.196 4.196 3 C 0.090 3.910 4 H 0.088 0.912 5 N -0.318 5.318 6 C -0.088 4.088 7 C 0.065 3.935 8 H 0.119 0.881 9 O -0.367 6.367 10 C -0.047 4.047 11 O -0.246 6.246 12 C -0.044 4.044 13 C -0.183 4.183 14 C -0.227 4.227 15 C 0.052 3.948 16 C -0.528 4.528 17 H 0.095 0.905 18 C -0.182 4.182 19 N -0.459 5.459 20 Si 0.804 3.196 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.172 4.172 25 C -0.153 4.153 26 C -0.109 4.109 27 C -0.210 4.210 28 C -0.201 4.201 29 H 0.255 0.745 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.966 -12.178 20.375 24.066 hybrid contribution 0.143 1.553 -0.175 1.569 sum -3.823 -10.625 20.200 23.141 Atomic orbital electron populations 1.25600 0.96775 1.00485 0.99539 1.23318 0.94835 1.00730 1.00746 1.18551 0.84809 0.99114 0.88531 0.91197 1.60157 1.34841 1.19712 1.17113 1.22486 1.01908 0.90754 0.93643 1.21793 0.93547 0.89456 0.88722 0.88092 1.86594 1.24827 1.52267 1.72971 1.23488 0.98333 0.99270 0.83563 1.85878 1.78941 1.29100 1.30711 1.18687 1.07222 0.84686 0.93759 1.20694 1.05271 0.91866 1.00507 1.20804 1.07149 0.97005 0.97779 1.17970 0.90665 0.93789 0.92410 1.19733 1.45677 0.95140 0.92226 0.90532 1.26764 0.92898 1.00025 0.98499 1.69898 1.34045 1.32562 1.09357 0.85151 0.78604 0.77802 0.78079 1.18103 1.19005 1.19179 1.20904 1.04230 0.91772 1.00333 1.20013 1.03788 0.98008 0.93502 1.21198 0.96657 0.96898 0.96109 1.21933 0.93466 1.03199 1.02368 1.21797 1.00886 1.02673 0.94745 0.74533 0.82095 0.90413 0.92166 0.76992 0.92046 0.90977 0.85347 0.87569 0.90211 0.87242 0.87556 0.90950 0.92163 0.91877 0.90894 0.93225 0.91222 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.50 19.25 74.32 1.43 -2.07 16 2 C -0.20 -3.70 11.35 31.13 0.35 -3.35 16 3 C 0.20 3.14 2.10 43.11 0.09 3.23 16 4 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 5 N -0.68 -12.00 6.22 -500.99 -3.12 -15.11 16 6 C 0.04 0.74 5.11 86.30 0.44 1.18 16 7 C 0.12 2.91 3.43 30.60 0.10 3.02 16 8 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 9 O -0.56 -15.34 13.25 -144.34 -1.91 -17.26 16 10 C 0.03 0.84 4.36 71.98 0.31 1.16 16 11 O -0.33 -13.17 10.09 -85.35 -0.86 -14.04 16 12 C 0.00 0.02 6.71 22.79 0.15 0.17 16 13 C -0.16 -7.22 8.96 22.11 0.20 -7.02 16 14 C -0.21 -10.20 9.74 22.48 0.22 -9.99 16 15 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 16 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 17 H 0.08 4.00 7.91 -2.92 -0.02 3.98 16 18 C 0.03 1.63 5.13 85.23 0.44 2.07 16 19 N -0.83 -44.38 10.96 21.82 0.24 -44.14 16 20 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 24 C -0.15 -8.32 8.64 22.49 0.19 -8.13 16 25 C -0.13 -6.70 9.92 22.11 0.22 -6.48 16 26 C -0.09 -1.14 2.62 -10.79 -0.03 -1.17 16 27 C -0.15 -1.48 8.96 71.98 0.64 -0.84 16 28 C -0.14 -1.60 8.94 71.98 0.64 -0.95 16 29 H 0.24 2.42 7.80 -4.42 -0.03 2.39 16 30 H 0.36 5.52 6.17 -89.70 -0.55 4.97 16 31 H 0.08 1.43 7.98 -2.39 -0.02 1.41 16 32 H 0.06 0.89 8.06 -2.39 -0.02 0.87 16 33 H 0.38 8.35 9.05 -74.06 -0.67 7.68 16 34 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 35 H 0.07 1.84 7.66 -2.38 -0.02 1.82 16 36 H 0.13 4.59 6.27 -2.91 -0.02 4.58 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.29 13.82 8.30 -92.72 -0.77 13.05 16 39 H 0.11 6.18 6.16 -2.91 -0.02 6.17 16 40 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 0.59 6.21 -2.39 -0.01 0.58 16 43 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.05 0.65 7.23 -2.39 -0.02 0.63 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -66.30 390.46 1.63 -64.67 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.25 Total: 38.48 kcal Atomic # 6 Polarization: -58.76 SS G_CDS: 5.51 Total: -53.25 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -2.88 Total: -59.25 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -2.77 Total: -31.29 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -66.30 1.63 -64.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491383671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds