Wall clock time and date at job start Tue Mar 31 2020 11:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46626 * 2 1 4 4 C 1.52994 * 109.47334 * 60.00485 * 3 2 1 5 5 C 1.52998 * 109.47385 * 299.99886 * 3 2 1 6 6 N 1.46500 * 109.46904 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00036 * 0.02562 * 6 3 2 8 8 C 1.34771 * 120.00124 * 179.97438 * 6 3 2 9 9 O 1.21719 * 120.00165 * 0.02562 * 8 6 3 10 10 C 1.46260 * 120.00191 * 179.97438 * 8 6 3 11 11 C 1.35019 * 119.99992 * 173.18088 * 10 8 6 12 12 C 1.46956 * 120.00076 * 348.51043 * 11 10 8 13 13 C 1.40025 * 120.10202 * 316.59943 * 12 11 10 14 14 C 1.37596 * 119.89638 * 179.78750 * 13 12 11 15 15 C 1.39178 * 120.10432 * 0.49473 * 14 13 12 16 16 O 1.35563 * 119.90046 * 179.76255 * 15 14 13 17 17 C 1.34781 * 117.00269 * 174.34093 * 16 15 14 18 18 H 1.08004 * 119.99547 * 5.06383 * 17 16 15 19 19 C 1.38716 * 120.00214 * 185.05871 * 17 16 15 20 20 N 1.31499 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47134 * 90.00191 * 21 19 17 23 23 H 1.48498 * 109.47439 * 209.99833 * 21 19 17 24 24 H 1.48502 * 109.47434 * 330.00361 * 21 19 17 25 25 C 1.39179 * 120.20105 * 359.73833 * 15 14 13 26 26 C 1.37604 * 120.10078 * 0.02590 * 25 15 14 27 27 H 1.09002 * 109.47415 * 299.99304 * 1 2 3 28 28 H 1.08992 * 109.47772 * 60.00166 * 1 2 3 29 29 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46842 * 240.00294 * 2 1 3 31 31 H 1.08994 * 109.47051 * 119.99964 * 2 1 3 32 32 H 1.08998 * 109.47212 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47131 * 299.99397 * 4 3 2 34 34 H 1.08994 * 109.47476 * 59.99342 * 4 3 2 35 35 H 1.09000 * 109.46962 * 300.00586 * 5 3 2 36 36 H 1.08997 * 109.47020 * 60.00096 * 5 3 2 37 37 H 1.08998 * 109.47321 * 180.02562 * 5 3 2 38 38 H 1.08998 * 109.47612 * 270.00139 * 7 6 3 39 39 H 1.09002 * 109.47162 * 30.00132 * 7 6 3 40 40 H 1.09003 * 109.47335 * 149.99815 * 7 6 3 41 41 H 1.08007 * 119.99786 * 352.90807 * 10 8 6 42 42 H 1.08002 * 119.99744 * 168.51236 * 11 10 8 43 43 H 1.07999 * 120.05059 * 0.02562 * 13 12 11 44 44 H 1.08005 * 119.94713 * 180.23424 * 14 13 12 45 45 H 0.97007 * 120.00303 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.94685 * 180.02562 * 25 15 14 47 47 H 1.07998 * 120.04772 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1638 -1.2492 6 7 3.5049 1.4426 -0.0006 7 6 4.2375 0.1739 -0.0017 8 6 4.1787 2.6098 -0.0012 9 8 3.5701 3.6639 -0.0008 10 6 5.6413 2.6099 -0.0013 11 6 6.3163 3.7709 -0.1408 12 6 5.6036 4.9915 -0.5427 13 6 4.6519 4.9435 -1.5687 14 6 3.9839 6.0881 -1.9387 15 6 4.2602 7.2944 -1.3018 16 8 3.6030 8.4205 -1.6729 17 6 3.8288 9.5299 -0.9416 18 1 4.5684 9.5166 -0.1546 19 6 3.1114 10.6888 -1.1997 20 7 2.2107 10.7049 -2.1576 21 14 3.4249 12.2266 -0.1865 22 1 4.4881 13.0370 -0.8330 23 1 2.1765 13.0260 -0.1008 24 1 3.8596 11.8393 1.1796 25 6 5.2088 7.3479 -0.2847 26 6 5.8783 6.2074 0.0952 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8936 3.1913 1.2494 33 1 0.4399 2.1638 1.2493 34 1 1.8933 1.6499 2.1392 35 1 1.8932 1.6499 -2.1392 36 1 0.4399 2.1637 -1.2492 37 1 1.8935 3.1913 -1.2494 38 1 4.4196 -0.1414 1.0257 39 1 3.6482 -0.5855 -0.5157 40 1 5.1897 0.3046 -0.5159 41 1 6.1814 1.6817 0.1147 42 1 7.3801 3.8024 0.0430 43 1 4.4398 4.0087 -2.0663 44 1 3.2470 6.0512 -2.7274 45 1 1.7093 11.5154 -2.3384 46 1 5.4196 8.2861 0.2070 47 1 6.6139 6.2498 0.8848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491959246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:54 Heat of formation + Delta-G solvation = -3.799137 kcal Electronic energy + Delta-G solvation = -27028.845359 eV Core-core repulsion = 23371.760896 eV Total energy + Delta-G solvation = -3657.084463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35796 -38.87305 -37.46141 -36.11299 -33.93890 -32.90962 -32.06626 -30.21735 -30.06602 -28.04419 -27.21693 -26.43409 -25.43559 -24.67351 -22.98434 -21.74937 -20.92033 -19.14968 -18.04737 -17.81944 -17.01773 -16.69643 -16.31690 -15.43540 -14.84895 -14.69550 -14.52117 -14.33569 -13.90207 -13.58509 -13.48630 -13.36266 -13.06911 -12.97447 -12.87232 -12.81291 -12.49053 -12.26423 -12.07534 -11.83903 -11.73595 -11.65797 -11.57577 -11.26725 -11.21751 -10.97562 -10.87885 -10.69818 -10.60638 -10.54603 -10.38467 -9.41099 -9.17707 -9.08126 -8.66345 -8.49659 -7.85933 -6.82131 -6.43440 -3.99181 1.28958 2.45568 2.74073 3.11641 3.15057 3.16579 3.20826 3.68691 3.99147 4.51590 4.72754 4.73606 4.93500 4.98290 5.08237 5.12893 5.16321 5.25153 5.28442 5.38319 5.39496 5.42647 5.56853 5.64561 5.71438 5.73520 5.76896 5.80175 5.83724 5.88475 5.92513 6.01436 6.04836 6.27492 6.32189 6.45862 6.49800 6.52474 6.64569 6.80760 6.85969 7.07131 7.15320 7.39634 7.48736 7.53474 7.65814 7.95577 8.03374 8.61359 9.02358 9.74719 10.74473 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.003200 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.247316 B = 8748.037611 C = 9714.545586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C 0.178 3.822 4 C -0.164 4.164 5 C -0.166 4.166 6 N -0.616 5.616 7 C 0.075 3.925 8 C 0.543 3.457 9 O -0.505 6.505 10 C -0.268 4.268 11 C 0.025 3.975 12 C -0.187 4.187 13 C 0.014 3.986 14 C -0.203 4.203 15 C 0.172 3.828 16 O -0.174 6.174 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.251 4.251 26 C -0.042 4.042 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -21.768 4.717 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.094 3.906 4 C -0.222 4.222 5 C -0.223 4.223 6 N -0.352 5.352 7 C -0.068 4.068 8 C 0.334 3.666 9 O -0.381 6.381 10 C -0.289 4.289 11 C 0.005 3.995 12 C -0.188 4.188 13 C -0.005 4.005 14 C -0.222 4.222 15 C 0.117 3.883 16 O -0.076 6.076 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.270 4.270 26 C -0.060 4.060 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.360 -20.967 4.430 21.560 hybrid contribution 0.251 0.450 0.665 0.841 sum 2.612 -20.517 5.094 21.300 Atomic orbital electron populations 1.21884 0.94892 1.01668 1.02703 1.21849 0.96729 0.95515 1.01986 1.20294 0.79084 0.94993 0.96260 1.22262 1.00860 1.03043 0.96001 1.22287 1.00930 1.03197 0.95935 1.47995 1.05728 1.06107 1.75320 1.21811 0.97222 0.86467 1.01307 1.18419 0.88424 0.83010 0.76713 1.90922 1.69614 1.29739 1.47829 1.22735 0.93269 0.98723 1.14200 1.22336 0.98076 0.91738 0.87309 1.18283 1.04704 0.92395 1.03431 1.20424 0.91049 0.95332 0.93654 1.19994 1.05749 0.90769 1.05696 1.19517 0.90081 0.87390 0.91316 1.83903 1.58447 1.15087 1.50157 1.21388 1.22512 0.86857 1.15813 0.88926 1.25312 0.95313 0.98751 0.97170 1.70021 1.21928 1.28773 1.28767 0.85709 0.78159 0.80074 0.79488 1.19861 1.20240 1.19138 1.20945 1.03190 0.99093 1.03771 1.20736 0.97003 0.91435 0.96846 0.92088 0.92007 0.92684 0.91473 0.91619 0.89879 0.91927 0.93304 0.93173 0.91889 0.89669 0.93271 0.91083 0.91038 0.86147 0.86258 0.88148 0.86931 0.91989 0.85731 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.21 37.16 0.34 -0.86 16 2 C -0.12 -1.05 3.75 -26.73 -0.10 -1.15 16 3 C 0.18 2.07 0.81 -131.82 -0.11 1.96 16 4 C -0.16 -2.10 8.05 37.15 0.30 -1.80 16 5 C -0.17 -2.15 8.05 37.16 0.30 -1.85 16 6 N -0.62 -7.39 2.82 -168.29 -0.48 -7.86 16 7 C 0.08 0.61 9.26 59.85 0.55 1.17 16 8 C 0.54 8.17 6.05 -13.04 -0.08 8.09 16 9 O -0.50 -9.54 8.39 5.17 0.04 -9.50 16 10 C -0.27 -3.51 9.02 -37.50 -0.34 -3.84 16 11 C 0.03 0.36 9.80 -37.20 -0.36 -0.01 16 12 C -0.19 -3.48 4.54 -105.03 -0.48 -3.95 16 13 C 0.01 0.28 6.60 -39.15 -0.26 0.02 16 14 C -0.20 -4.67 9.97 -39.47 -0.39 -5.06 16 15 C 0.17 4.39 6.66 -38.88 -0.26 4.13 16 16 O -0.17 -5.13 9.74 0.76 0.01 -5.13 16 17 C -0.39 -11.19 9.48 30.91 0.29 -10.89 16 18 H 0.09 2.47 5.18 -52.48 -0.27 2.20 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 21 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.25 -5.77 9.14 -39.46 -0.36 -6.13 16 26 C -0.04 -0.82 9.78 -39.14 -0.38 -1.20 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.52 6.88 -51.93 -0.36 0.17 16 31 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 32 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 33 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 37 H 0.08 1.41 6.16 -51.93 -0.32 1.09 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.47 5.76 -51.93 -0.30 0.17 16 40 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 41 H 0.12 1.17 6.34 -52.48 -0.33 0.84 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.10 1.85 7.01 -52.49 -0.37 1.48 16 44 H 0.11 2.54 8.06 -52.48 -0.42 2.11 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.13 2.84 5.62 -52.49 -0.29 2.55 16 47 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -32.93 365.03 -7.34 -40.27 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.72 Total: 6.12 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.43 Total: -20.38 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.28 Total: -32.77 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.05 Total: -14.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.93 -7.34 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491959246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.471 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds