Wall clock time and date at job start Tue Mar 31 2020 11:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46626 * 2 1 4 4 C 1.52994 * 109.47334 * 60.00485 * 3 2 1 5 5 C 1.52998 * 109.47385 * 299.99886 * 3 2 1 6 6 N 1.46500 * 109.46904 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00036 * 0.02562 * 6 3 2 8 8 C 1.34771 * 120.00124 * 179.97438 * 6 3 2 9 9 O 1.21719 * 120.00165 * 0.02562 * 8 6 3 10 10 C 1.46260 * 120.00191 * 179.97438 * 8 6 3 11 11 C 1.35019 * 119.99992 * 173.18088 * 10 8 6 12 12 C 1.46956 * 120.00076 * 348.51043 * 11 10 8 13 13 C 1.40025 * 120.10202 * 316.59943 * 12 11 10 14 14 C 1.37596 * 119.89638 * 179.78750 * 13 12 11 15 15 C 1.39178 * 120.10432 * 0.49473 * 14 13 12 16 16 O 1.35563 * 119.90046 * 179.76255 * 15 14 13 17 17 C 1.34781 * 117.00269 * 174.34093 * 16 15 14 18 18 H 1.08004 * 119.99547 * 5.06383 * 17 16 15 19 19 C 1.38716 * 120.00214 * 185.05871 * 17 16 15 20 20 N 1.31499 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47134 * 90.00191 * 21 19 17 23 23 H 1.48498 * 109.47439 * 209.99833 * 21 19 17 24 24 H 1.48502 * 109.47434 * 330.00361 * 21 19 17 25 25 C 1.39179 * 120.20105 * 359.73833 * 15 14 13 26 26 C 1.37604 * 120.10078 * 0.02590 * 25 15 14 27 27 H 1.09002 * 109.47415 * 299.99304 * 1 2 3 28 28 H 1.08992 * 109.47772 * 60.00166 * 1 2 3 29 29 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46842 * 240.00294 * 2 1 3 31 31 H 1.08994 * 109.47051 * 119.99964 * 2 1 3 32 32 H 1.08998 * 109.47212 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47131 * 299.99397 * 4 3 2 34 34 H 1.08994 * 109.47476 * 59.99342 * 4 3 2 35 35 H 1.09000 * 109.46962 * 300.00586 * 5 3 2 36 36 H 1.08997 * 109.47020 * 60.00096 * 5 3 2 37 37 H 1.08998 * 109.47321 * 180.02562 * 5 3 2 38 38 H 1.08998 * 109.47612 * 270.00139 * 7 6 3 39 39 H 1.09002 * 109.47162 * 30.00132 * 7 6 3 40 40 H 1.09003 * 109.47335 * 149.99815 * 7 6 3 41 41 H 1.08007 * 119.99786 * 352.90807 * 10 8 6 42 42 H 1.08002 * 119.99744 * 168.51236 * 11 10 8 43 43 H 1.07999 * 120.05059 * 0.02562 * 13 12 11 44 44 H 1.08005 * 119.94713 * 180.23424 * 14 13 12 45 45 H 0.97007 * 120.00303 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.94685 * 180.02562 * 25 15 14 47 47 H 1.07998 * 120.04772 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1638 -1.2492 6 7 3.5049 1.4426 -0.0006 7 6 4.2375 0.1739 -0.0017 8 6 4.1787 2.6098 -0.0012 9 8 3.5701 3.6639 -0.0008 10 6 5.6413 2.6099 -0.0013 11 6 6.3163 3.7709 -0.1408 12 6 5.6036 4.9915 -0.5427 13 6 4.6519 4.9435 -1.5687 14 6 3.9839 6.0881 -1.9387 15 6 4.2602 7.2944 -1.3018 16 8 3.6030 8.4205 -1.6729 17 6 3.8288 9.5299 -0.9416 18 1 4.5684 9.5166 -0.1546 19 6 3.1114 10.6888 -1.1997 20 7 2.2107 10.7049 -2.1576 21 14 3.4249 12.2266 -0.1865 22 1 4.4881 13.0370 -0.8330 23 1 2.1765 13.0260 -0.1008 24 1 3.8596 11.8393 1.1796 25 6 5.2088 7.3479 -0.2847 26 6 5.8783 6.2074 0.0952 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8936 3.1913 1.2494 33 1 0.4399 2.1638 1.2493 34 1 1.8933 1.6499 2.1392 35 1 1.8932 1.6499 -2.1392 36 1 0.4399 2.1637 -1.2492 37 1 1.8935 3.1913 -1.2494 38 1 4.4196 -0.1414 1.0257 39 1 3.6482 -0.5855 -0.5157 40 1 5.1897 0.3046 -0.5159 41 1 6.1814 1.6817 0.1147 42 1 7.3801 3.8024 0.0430 43 1 4.4398 4.0087 -2.0663 44 1 3.2470 6.0512 -2.7274 45 1 1.7093 11.5154 -2.3384 46 1 5.4196 8.2861 0.2070 47 1 6.6139 6.2498 0.8848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491959246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:53 Heat of formation + Delta-G solvation = -23.814802 kcal Electronic energy + Delta-G solvation = -27029.713304 eV Core-core repulsion = 23371.760896 eV Total energy + Delta-G solvation = -3657.952407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.48167 -40.62035 -38.80772 -37.62576 -34.95195 -34.50610 -33.75867 -31.82121 -31.03235 -29.58650 -28.28407 -27.51482 -27.19158 -25.62621 -24.21841 -23.46570 -22.39372 -20.32245 -19.76044 -19.13581 -18.63975 -17.94839 -17.32553 -16.48064 -16.35999 -16.22748 -15.96734 -15.68953 -15.49806 -15.14776 -14.74412 -14.69670 -14.36822 -14.23167 -13.93806 -13.80941 -13.73203 -13.58168 -13.53682 -13.08501 -12.97416 -12.76941 -12.68468 -12.55006 -12.47547 -12.30743 -12.18235 -12.15030 -12.06523 -11.62434 -11.53629 -11.23329 -10.90614 -10.34456 -10.33595 -9.70978 -9.32900 -8.53422 -8.48244 -6.15993 0.01190 0.72322 1.14433 1.32685 1.44939 1.51372 2.16663 2.18701 2.53534 2.87162 3.21227 3.52888 3.66147 3.94669 4.00809 4.04747 4.10605 4.14779 4.16989 4.34160 4.42288 4.47470 4.54946 4.58326 4.66076 4.75485 4.76353 4.78893 4.83689 4.96351 4.97755 5.00518 5.06198 5.09902 5.10525 5.13161 5.20288 5.27361 5.29125 5.43863 5.46093 5.54222 5.68200 5.72863 5.83288 5.89988 6.02372 6.25742 6.65483 6.95179 7.49419 7.77706 8.74553 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.003200 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.247316 B = 8748.037611 C = 9714.545586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.175 3.825 4 C -0.159 4.159 5 C -0.162 4.162 6 N -0.610 5.610 7 C 0.064 3.936 8 C 0.524 3.476 9 O -0.554 6.554 10 C -0.234 4.234 11 C 0.002 3.998 12 C -0.157 4.157 13 C 0.019 3.981 14 C -0.220 4.220 15 C 0.128 3.872 16 O -0.232 6.232 17 C -0.416 4.416 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.254 1.254 25 C -0.259 4.259 26 C -0.048 4.048 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.116 0.884 44 H 0.098 0.902 45 H 0.273 0.727 46 H 0.119 0.881 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -26.113 6.822 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C 0.090 3.910 4 C -0.217 4.217 5 C -0.220 4.220 6 N -0.343 5.343 7 C -0.077 4.077 8 C 0.316 3.684 9 O -0.435 6.435 10 C -0.255 4.255 11 C -0.017 4.017 12 C -0.158 4.158 13 C 0.001 3.999 14 C -0.240 4.240 15 C 0.078 3.922 16 O -0.138 6.138 17 C -0.492 4.492 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.278 4.278 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.187 0.813 42 H 0.184 0.816 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.964 -25.424 6.548 26.718 hybrid contribution -0.483 1.216 0.076 1.311 sum 4.481 -24.207 6.623 25.494 Atomic orbital electron populations 1.21896 0.94559 1.02709 1.02112 1.21802 0.96937 0.92916 1.03412 1.20358 0.79264 0.96846 0.94508 1.22184 1.01466 1.00742 0.97272 1.22218 1.01482 1.00904 0.97354 1.48100 1.06029 1.06863 1.73339 1.22162 0.97807 0.84751 1.03026 1.19041 0.89632 0.83263 0.76510 1.90942 1.70723 1.31805 1.49992 1.23194 0.92087 1.00159 1.10010 1.22564 1.00129 0.89642 0.89342 1.18845 1.02133 0.94204 1.00628 1.20599 0.90820 0.94435 0.94029 1.20150 1.06512 0.91490 1.05818 1.19982 0.91560 0.87305 0.93402 1.83871 1.61243 1.16387 1.52303 1.21881 1.23326 0.87452 1.16495 0.88090 1.26666 0.94738 1.02277 0.98442 1.70175 1.24125 1.30077 1.31530 0.84560 0.78498 0.74984 0.77959 1.18415 1.19457 1.17735 1.21074 1.03133 1.00417 1.03203 1.21162 0.97266 0.90537 0.97625 0.92625 0.92749 0.90813 0.89992 0.90077 0.94130 0.91076 0.92324 0.92378 0.91142 0.93986 0.91514 0.89126 0.89454 0.81271 0.81606 0.86606 0.88340 0.91769 0.86344 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.21 71.98 0.66 -1.36 16 2 C -0.11 -1.51 3.75 30.59 0.11 -1.40 16 3 C 0.17 3.73 0.81 3.60 0.00 3.73 16 4 C -0.16 -3.99 8.05 71.98 0.58 -3.41 16 5 C -0.16 -4.19 8.05 71.98 0.58 -3.61 16 6 N -0.61 -12.60 2.82 -804.55 -2.27 -14.87 16 7 C 0.06 0.68 9.26 127.77 1.18 1.86 16 8 C 0.52 14.41 6.05 86.33 0.52 14.93 16 9 O -0.55 -21.01 8.39 -4.41 -0.04 -21.04 16 10 C -0.23 -4.89 9.02 23.62 0.21 -4.67 16 11 C 0.00 0.06 9.80 23.81 0.23 0.29 16 12 C -0.16 -5.57 4.54 -20.13 -0.09 -5.66 16 13 C 0.02 0.79 6.60 22.55 0.15 0.94 16 14 C -0.22 -10.94 9.97 22.34 0.22 -10.71 16 15 C 0.13 7.09 6.66 22.72 0.15 7.24 16 16 O -0.23 -15.05 9.74 -20.18 -0.20 -15.25 16 17 C -0.42 -25.69 9.48 67.93 0.64 -25.04 16 18 H 0.10 5.75 5.18 -2.91 -0.02 5.73 16 19 C -0.02 -1.42 5.49 84.86 0.47 -0.96 16 20 N -0.92 -59.00 13.67 21.62 0.30 -58.71 16 21 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 25 C -0.26 -12.43 9.14 22.35 0.20 -12.22 16 26 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 27 H 0.05 0.78 6.43 -2.39 -0.02 0.77 16 28 H 0.05 0.79 6.43 -2.39 -0.02 0.77 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 0.90 6.88 -2.39 -0.02 0.88 16 31 H 0.08 0.89 7.78 -2.39 -0.02 0.87 16 32 H 0.04 1.38 6.16 -2.39 -0.01 1.36 16 33 H 0.07 1.61 6.43 -2.38 -0.02 1.59 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 37 H 0.04 1.47 6.16 -2.39 -0.01 1.46 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.67 5.76 -2.39 -0.01 0.66 16 40 H 0.09 0.68 6.20 -2.39 -0.01 0.67 16 41 H 0.17 1.96 6.34 -2.91 -0.02 1.94 16 42 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.12 4.25 7.01 -2.91 -0.02 4.23 16 44 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 45 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 46 H 0.12 5.69 5.62 -2.91 -0.02 5.68 16 47 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -82.78 365.03 6.85 -75.93 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.98 Total: 28.82 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 6.06 Total: -41.65 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.98 Total: -73.58 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.23 Total: -36.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -82.78 6.85 -75.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491959246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.111 kcal (2) G-P(sol) polarization free energy of solvation -82.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds