Wall clock time and date at job start Tue Mar 31 2020 11:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.52998 * 109.46962 * 239.99595 * 2 1 3 5 5 C 1.52998 * 109.47041 * 119.99838 * 2 1 3 6 6 N 1.46506 * 109.46853 * 59.99813 * 5 2 1 7 7 C 1.46498 * 119.99777 * 90.00060 * 6 5 2 8 8 C 1.50707 * 109.47103 * 89.99966 * 7 6 5 9 9 H 1.08001 * 119.99850 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99819 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99783 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00239 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47085 * 90.00379 * 12 10 8 14 14 H 1.48503 * 109.47150 * 210.00375 * 12 10 8 15 15 H 1.48504 * 109.47134 * 330.00081 * 12 10 8 16 16 C 1.34775 * 119.99994 * 269.99394 * 6 5 2 17 17 O 1.21725 * 119.99584 * 179.97438 * 16 6 5 18 18 C 1.46256 * 120.00301 * 0.02562 * 16 6 5 19 19 C 1.34976 * 120.00265 * 173.16813 * 18 16 6 20 20 C 1.47001 * 119.99819 * 349.09639 * 19 18 16 21 21 C 1.39975 * 120.11184 * 316.07374 * 20 19 18 22 22 C 1.37663 * 119.88526 * 179.77035 * 21 20 19 23 23 C 1.39022 * 120.11204 * 0.53371 * 22 21 20 24 24 O 1.35738 * 119.88378 * 179.71498 * 23 22 21 25 25 C 1.39017 * 120.22866 * 359.70195 * 23 22 21 26 26 C 1.37662 * 120.11550 * 0.03957 * 25 23 22 27 27 H 1.09002 * 109.47137 * 300.00072 * 1 2 3 28 28 H 1.09002 * 109.47240 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47135 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47406 * 299.99787 * 3 2 1 32 32 H 1.09002 * 109.47224 * 59.99981 * 3 2 1 33 33 H 1.08995 * 109.47483 * 300.00776 * 4 2 1 34 34 H 1.09011 * 109.46811 * 60.00449 * 4 2 1 35 35 H 1.09000 * 109.47160 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47228 * 300.00033 * 5 2 1 37 37 H 1.08994 * 109.47235 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.47151 * 209.99322 * 7 6 5 39 39 H 1.09001 * 109.47458 * 330.00101 * 7 6 5 40 40 H 0.96996 * 119.99768 * 179.97438 * 11 10 8 41 41 H 1.07998 * 119.99898 * 353.17620 * 18 16 6 42 42 H 1.07999 * 120.00053 * 169.08833 * 19 18 16 43 43 H 1.08002 * 120.05589 * 0.02562 * 21 20 19 44 44 H 1.07995 * 119.94466 * 180.22898 * 22 21 20 45 45 H 0.96696 * 114.00496 * 269.98133 * 24 23 22 46 46 H 1.08001 * 119.94460 * 180.02562 * 25 23 22 47 47 H 1.07999 * 120.06024 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.5516 -2.1025 1.2492 7 6 2.3433 -3.1593 0.6149 8 6 3.2846 -3.7585 1.6279 9 1 3.2925 -3.3888 2.6426 10 6 4.1362 -4.7781 1.2590 11 7 4.9573 -5.3014 2.1431 12 14 4.1230 -5.4171 -0.4963 13 1 5.0949 -4.6451 -1.3115 14 1 4.5016 -6.8531 -0.5031 15 1 2.7620 -5.2614 -1.0695 16 6 0.3740 -2.4008 1.8329 17 8 -0.0320 -3.5484 1.8325 18 6 -0.4166 -1.3456 2.4659 19 6 -1.6558 -1.6157 2.9279 20 6 -2.3055 -2.8897 2.5877 21 6 -2.2467 -3.3802 1.2780 22 6 -2.8528 -4.5761 0.9655 23 6 -3.5320 -5.2908 1.9457 24 8 -4.1329 -6.4666 1.6311 25 6 -3.5975 -4.8056 3.2468 26 6 -2.9903 -3.6134 3.5708 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7216 1.2490 38 1 1.6772 -3.9340 0.2352 39 1 2.9178 -2.7376 -0.2099 40 1 5.5562 -6.0189 1.8837 41 1 -0.0090 -0.3503 2.5634 42 1 -2.1698 -0.8960 3.5477 43 1 -1.7232 -2.8234 0.5148 44 1 -2.8049 -4.9572 -0.0438 45 1 -5.0506 -6.3741 1.3410 46 1 -4.1260 -5.3649 4.0047 47 1 -3.0414 -3.2376 4.5820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492491055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:14 Heat of formation + Delta-G solvation = -25.275536 kcal Electronic energy + Delta-G solvation = -27722.126695 eV Core-core repulsion = 24064.110945 eV Total energy + Delta-G solvation = -3658.015750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05814 -39.16105 -37.37254 -36.40821 -34.07064 -33.01847 -32.30682 -30.76430 -29.29208 -27.94972 -27.17841 -27.00180 -25.63931 -23.82742 -22.53365 -22.12495 -20.43174 -19.25700 -18.28814 -17.69974 -17.02411 -16.95519 -15.73470 -15.43784 -15.26072 -15.06415 -14.72122 -14.23270 -13.94397 -13.83576 -13.60984 -13.40843 -13.23328 -13.01240 -12.62169 -12.36823 -12.32102 -12.15650 -11.96506 -11.78096 -11.64941 -11.54270 -11.38733 -11.19090 -11.05145 -10.83444 -10.66137 -10.52458 -10.29111 -10.21333 -10.04654 -9.54685 -9.48879 -9.06872 -8.60568 -8.55900 -7.69854 -7.56697 -6.05933 -4.03825 0.94569 1.71004 2.06134 3.27355 3.36391 3.39970 3.84789 3.96294 3.97732 4.35547 4.41663 4.85845 4.91046 4.95128 4.97926 5.11862 5.17624 5.22979 5.29976 5.45480 5.55579 5.60984 5.63243 5.69004 5.80430 5.84358 5.88547 6.01940 6.02820 6.07475 6.11197 6.16831 6.20075 6.27260 6.31373 6.36145 6.47763 6.54719 6.61618 6.68380 6.74694 6.85887 7.02300 7.04913 7.39657 7.65247 7.79542 8.30120 8.50252 8.97046 9.04788 9.54782 11.07714 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.005441 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.837042 B = 5144.450780 C = 6945.033797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.119 3.881 6 N -0.580 5.580 7 C 0.214 3.786 8 C -0.525 4.525 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.898 5.898 12 Si 0.871 3.129 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.530 3.470 17 O -0.526 6.526 18 C -0.191 4.191 19 C -0.053 4.053 20 C -0.067 4.067 21 C -0.016 4.016 22 C -0.156 4.156 23 C 0.107 3.893 24 O -0.500 6.500 25 C -0.160 4.160 26 C -0.089 4.089 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.383 0.617 46 H 0.122 0.878 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 12.629 -3.041 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.006 4.006 6 N -0.309 5.309 7 C 0.094 3.906 8 C -0.564 4.564 9 H 0.091 0.909 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.698 3.302 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.319 3.681 17 O -0.405 6.405 18 C -0.212 4.212 19 C -0.073 4.073 20 C -0.067 4.067 21 C -0.034 4.034 22 C -0.174 4.174 23 C 0.063 3.937 24 O -0.310 6.310 25 C -0.179 4.179 26 C -0.107 4.107 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.238 0.762 46 H 0.140 0.860 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.327 11.610 -2.886 19.444 hybrid contribution 0.038 -0.248 -0.880 0.915 sum -15.290 11.362 -3.766 19.418 Atomic orbital electron populations 1.22032 0.94830 1.01891 1.01159 1.21008 0.95872 0.95342 0.96714 1.21797 1.01223 0.95021 1.01440 1.21974 1.01167 1.00996 0.95961 1.21601 1.00450 0.82332 0.96174 1.47825 1.19939 1.08284 1.54886 1.19748 0.91012 0.86249 0.93632 1.21339 1.18466 1.18585 0.98005 0.90851 1.24842 0.95056 0.95887 0.97172 1.69897 1.23321 1.26344 1.34098 0.86913 0.78942 0.78767 0.85548 1.20122 1.20980 1.18859 1.18202 0.81754 0.88703 0.79426 1.90878 1.69729 1.21294 1.58550 1.23407 0.95948 0.99405 1.02452 1.22196 0.94422 0.94926 0.95775 1.18852 0.98512 0.95540 0.93763 1.20905 0.92446 0.94576 0.95506 1.21160 1.01357 0.95460 0.99439 1.18564 0.97150 0.85521 0.92439 1.84815 1.30204 1.27689 1.88286 1.21112 1.03739 0.96898 0.96129 1.20982 0.96723 0.94576 0.98394 0.92515 0.93069 0.92447 0.92414 0.92751 0.92759 0.91718 0.93391 0.92419 0.91197 0.89803 0.94320 0.95180 0.92636 0.85069 0.85194 0.86575 0.86007 0.76202 0.85985 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 6.89 37.16 0.26 -1.40 16 2 C -0.09 -1.10 0.84 -154.51 -0.13 -1.23 16 3 C -0.14 -1.37 8.47 37.16 0.31 -1.05 16 4 C -0.14 -1.99 7.22 37.16 0.27 -1.72 16 5 C 0.12 1.82 4.52 -4.04 -0.02 1.81 16 6 N -0.58 -11.47 1.98 -176.76 -0.35 -11.82 16 7 C 0.21 5.13 3.13 -5.19 -0.02 5.12 16 8 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 9 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 10 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 12 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 16 C 0.53 10.43 5.25 -13.04 -0.07 10.36 16 17 O -0.53 -12.41 11.73 5.17 0.06 -12.35 16 18 C -0.19 -2.79 6.73 -37.52 -0.25 -3.04 16 19 C -0.05 -0.70 9.80 -37.19 -0.36 -1.07 16 20 C -0.07 -1.02 4.53 -105.05 -0.48 -1.50 16 21 C -0.02 -0.26 6.59 -39.14 -0.26 -0.52 16 22 C -0.16 -2.50 9.97 -39.50 -0.39 -2.90 16 23 C 0.11 1.64 6.71 -39.00 -0.26 1.38 16 24 O -0.50 -6.77 13.49 -18.92 -0.26 -7.03 16 25 C -0.16 -2.30 9.97 -39.50 -0.39 -2.69 16 26 C -0.09 -1.26 9.79 -39.14 -0.38 -1.64 16 27 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.79 5.67 -51.93 -0.29 0.50 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 1.05 5.99 -51.93 -0.31 0.74 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.07 0.93 6.02 -51.93 -0.31 0.61 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 39 H 0.03 0.68 5.47 -51.93 -0.28 0.40 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.13 1.54 4.96 -52.49 -0.26 1.28 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.92 6.69 -52.49 -0.35 1.57 16 44 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.38 2.94 9.06 45.56 0.41 3.35 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 47 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -35.73 367.37 -7.82 -43.56 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.30 Total: 5.79 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.62 Total: -13.55 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.42 Total: -39.13 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.19 Total: -19.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.73 -7.82 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492491055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds