Wall clock time and date at job start Tue Mar 31 2020 11:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.52998 * 109.46962 * 239.99595 * 2 1 3 5 5 C 1.52998 * 109.47041 * 119.99838 * 2 1 3 6 6 N 1.46506 * 109.46853 * 59.99813 * 5 2 1 7 7 C 1.46498 * 119.99777 * 90.00060 * 6 5 2 8 8 C 1.50707 * 109.47103 * 89.99966 * 7 6 5 9 9 H 1.08001 * 119.99850 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99819 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99783 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00239 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47085 * 90.00379 * 12 10 8 14 14 H 1.48503 * 109.47150 * 210.00375 * 12 10 8 15 15 H 1.48504 * 109.47134 * 330.00081 * 12 10 8 16 16 C 1.34775 * 119.99994 * 269.99394 * 6 5 2 17 17 O 1.21725 * 119.99584 * 179.97438 * 16 6 5 18 18 C 1.46256 * 120.00301 * 0.02562 * 16 6 5 19 19 C 1.34976 * 120.00265 * 173.16813 * 18 16 6 20 20 C 1.47001 * 119.99819 * 349.09639 * 19 18 16 21 21 C 1.39975 * 120.11184 * 316.07374 * 20 19 18 22 22 C 1.37663 * 119.88526 * 179.77035 * 21 20 19 23 23 C 1.39022 * 120.11204 * 0.53371 * 22 21 20 24 24 O 1.35738 * 119.88378 * 179.71498 * 23 22 21 25 25 C 1.39017 * 120.22866 * 359.70195 * 23 22 21 26 26 C 1.37662 * 120.11550 * 0.03957 * 25 23 22 27 27 H 1.09002 * 109.47137 * 300.00072 * 1 2 3 28 28 H 1.09002 * 109.47240 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47135 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47406 * 299.99787 * 3 2 1 32 32 H 1.09002 * 109.47224 * 59.99981 * 3 2 1 33 33 H 1.08995 * 109.47483 * 300.00776 * 4 2 1 34 34 H 1.09011 * 109.46811 * 60.00449 * 4 2 1 35 35 H 1.09000 * 109.47160 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47228 * 300.00033 * 5 2 1 37 37 H 1.08994 * 109.47235 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.47151 * 209.99322 * 7 6 5 39 39 H 1.09001 * 109.47458 * 330.00101 * 7 6 5 40 40 H 0.96996 * 119.99768 * 179.97438 * 11 10 8 41 41 H 1.07998 * 119.99898 * 353.17620 * 18 16 6 42 42 H 1.07999 * 120.00053 * 169.08833 * 19 18 16 43 43 H 1.08002 * 120.05589 * 0.02562 * 21 20 19 44 44 H 1.07995 * 119.94466 * 180.22898 * 22 21 20 45 45 H 0.96696 * 114.00496 * 269.98133 * 24 23 22 46 46 H 1.08001 * 119.94460 * 180.02562 * 25 23 22 47 47 H 1.07999 * 120.06024 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.5516 -2.1025 1.2492 7 6 2.3433 -3.1593 0.6149 8 6 3.2846 -3.7585 1.6279 9 1 3.2925 -3.3888 2.6426 10 6 4.1362 -4.7781 1.2590 11 7 4.9573 -5.3014 2.1431 12 14 4.1230 -5.4171 -0.4963 13 1 5.0949 -4.6451 -1.3115 14 1 4.5016 -6.8531 -0.5031 15 1 2.7620 -5.2614 -1.0695 16 6 0.3740 -2.4008 1.8329 17 8 -0.0320 -3.5484 1.8325 18 6 -0.4166 -1.3456 2.4659 19 6 -1.6558 -1.6157 2.9279 20 6 -2.3055 -2.8897 2.5877 21 6 -2.2467 -3.3802 1.2780 22 6 -2.8528 -4.5761 0.9655 23 6 -3.5320 -5.2908 1.9457 24 8 -4.1329 -6.4666 1.6311 25 6 -3.5975 -4.8056 3.2468 26 6 -2.9903 -3.6134 3.5708 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7216 1.2490 38 1 1.6772 -3.9340 0.2352 39 1 2.9178 -2.7376 -0.2099 40 1 5.5562 -6.0189 1.8837 41 1 -0.0090 -0.3503 2.5634 42 1 -2.1698 -0.8960 3.5477 43 1 -1.7232 -2.8234 0.5148 44 1 -2.8049 -4.9572 -0.0438 45 1 -5.0506 -6.3741 1.3410 46 1 -4.1260 -5.3649 4.0047 47 1 -3.0414 -3.2376 4.5820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492491055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:13 Heat of formation + Delta-G solvation = -49.242339 kcal Electronic energy + Delta-G solvation = -27723.165973 eV Core-core repulsion = 24064.110945 eV Total energy + Delta-G solvation = -3659.055028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39317 -40.33780 -38.56533 -37.58267 -35.71185 -34.33802 -34.21353 -31.90698 -30.88240 -29.40312 -28.10067 -28.05142 -26.94598 -25.36565 -23.87343 -23.45430 -21.85529 -20.38411 -19.39128 -19.16667 -18.90757 -18.34325 -17.19623 -16.74058 -16.49533 -16.35135 -16.17584 -15.60591 -15.23753 -15.06064 -14.78157 -14.66445 -14.60468 -14.27292 -14.23542 -13.77521 -13.67907 -13.33017 -13.30923 -13.01686 -12.88576 -12.80147 -12.59046 -12.48429 -12.39543 -12.28885 -12.16062 -11.82451 -11.69278 -11.56050 -11.41481 -11.35995 -10.83096 -10.71776 -10.48209 -9.82498 -9.18246 -8.86157 -8.36165 -6.39260 -0.19378 0.54887 0.92566 1.25087 1.30434 1.40356 2.27043 2.39733 2.56710 2.85091 2.98354 3.31889 3.79353 3.81610 3.92256 3.94578 4.02777 4.07874 4.15967 4.42523 4.47974 4.56597 4.62429 4.68173 4.73204 4.82994 4.87141 4.91120 4.96469 4.99356 5.00121 5.07252 5.11585 5.14414 5.16890 5.26370 5.31213 5.39006 5.46312 5.48266 5.51310 5.52621 5.57801 5.72012 5.76718 5.98743 6.25511 6.61995 6.82442 6.88845 7.21747 7.55569 8.81110 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.005441 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.837042 B = 5144.450780 C = 6945.033797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.146 4.146 5 C 0.113 3.887 6 N -0.587 5.587 7 C 0.231 3.769 8 C -0.530 4.530 9 H 0.028 0.972 10 C 0.012 3.988 11 N -0.945 5.945 12 Si 0.940 3.060 13 H -0.249 1.249 14 H -0.282 1.282 15 H -0.260 1.260 16 C 0.522 3.478 17 O -0.578 6.578 18 C -0.206 4.206 19 C -0.028 4.028 20 C -0.089 4.089 21 C -0.029 4.029 22 C -0.181 4.181 23 C 0.101 3.899 24 O -0.512 6.512 25 C -0.168 4.168 26 C -0.089 4.089 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.011 0.989 39 H 0.047 0.953 40 H 0.267 0.733 41 H 0.166 0.834 42 H 0.182 0.818 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.408 0.592 46 H 0.145 0.855 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 15.224 -3.238 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.189 4.189 4 C -0.203 4.203 5 C -0.010 4.010 6 N -0.316 5.316 7 C 0.108 3.892 8 C -0.569 4.569 9 H 0.046 0.954 10 C -0.185 4.185 11 N -0.586 5.586 12 Si 0.763 3.237 13 H -0.173 1.173 14 H -0.208 1.208 15 H -0.184 1.184 16 C 0.314 3.686 17 O -0.460 6.460 18 C -0.226 4.226 19 C -0.047 4.047 20 C -0.089 4.089 21 C -0.047 4.047 22 C -0.200 4.200 23 C 0.057 3.943 24 O -0.325 6.325 25 C -0.186 4.186 26 C -0.107 4.107 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.184 0.816 42 H 0.199 0.801 43 H 0.122 0.878 44 H 0.137 0.863 45 H 0.267 0.733 46 H 0.162 0.838 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.023 14.265 -3.092 22.424 hybrid contribution 0.473 -1.114 -0.744 1.421 sum -16.550 13.151 -3.836 21.484 Atomic orbital electron populations 1.21997 0.93739 1.00686 1.03032 1.20962 0.96653 0.96425 0.94179 1.21754 1.01028 0.92927 1.03154 1.21979 1.00675 0.99701 0.97925 1.21892 0.99565 0.80427 0.99101 1.47845 1.19898 1.09075 1.54778 1.19276 0.89956 0.87060 0.92868 1.21605 1.19404 1.18803 0.97058 0.95410 1.25783 0.94583 0.96127 1.02046 1.70050 1.24554 1.27332 1.36639 0.85828 0.79654 0.78245 0.79996 1.17313 1.20799 1.18408 1.19094 0.81646 0.89399 0.78506 1.90850 1.70902 1.23786 1.60490 1.23318 0.96336 0.99296 1.03657 1.22692 0.93574 0.94381 0.94028 1.19219 0.99103 0.97020 0.93536 1.20929 0.92687 0.94823 0.96279 1.21324 1.02554 0.96120 0.99962 1.18710 0.97137 0.85666 0.92809 1.84739 1.32232 1.27105 1.88422 1.21437 1.03794 0.97279 0.96129 1.21383 0.95567 0.94291 0.99488 0.90290 0.91531 0.95163 0.92787 0.91249 0.90842 0.94818 0.91241 0.93183 0.88542 0.91625 0.97049 0.93516 0.92394 0.81649 0.80137 0.87810 0.86257 0.73325 0.83766 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 6.89 71.98 0.50 -2.35 16 2 C -0.08 -1.87 0.84 -52.18 -0.04 -1.91 16 3 C -0.13 -2.16 8.47 71.98 0.61 -1.55 16 4 C -0.15 -3.90 7.22 71.98 0.52 -3.38 16 5 C 0.11 3.37 4.52 86.38 0.39 3.76 16 6 N -0.59 -23.73 1.98 -831.34 -1.65 -25.37 16 7 C 0.23 11.50 3.13 85.64 0.27 11.77 16 8 C -0.53 -32.03 9.94 25.60 0.25 -31.78 16 9 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 10 C 0.01 0.75 5.47 84.65 0.46 1.22 16 11 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 12 Si 0.94 46.23 27.47 68.60 1.88 48.11 16 13 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.26 -12.50 6.54 99.48 0.65 -11.85 16 16 C 0.52 20.81 5.25 86.33 0.45 21.26 16 17 O -0.58 -28.42 11.73 -4.43 -0.05 -28.47 16 18 C -0.21 -5.56 6.73 23.60 0.16 -5.40 16 19 C -0.03 -0.64 9.80 23.82 0.23 -0.41 16 20 C -0.09 -2.62 4.53 -20.14 -0.09 -2.71 16 21 C -0.03 -0.97 6.59 22.55 0.15 -0.82 16 22 C -0.18 -6.04 9.97 22.32 0.22 -5.82 16 23 C 0.10 3.09 6.71 22.64 0.15 3.24 16 24 O -0.51 -13.61 13.49 -90.62 -1.22 -14.84 16 25 C -0.17 -4.60 9.97 22.32 0.22 -4.37 16 26 C -0.09 -2.37 9.79 22.55 0.22 -2.15 16 27 H 0.08 1.27 6.37 -2.39 -0.02 1.25 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.03 0.80 5.67 -2.39 -0.01 0.79 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.03 1.10 5.99 -2.39 -0.01 1.08 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.10 2.33 6.02 -2.39 -0.01 2.32 16 37 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 38 H 0.01 0.63 6.48 -2.39 -0.02 0.62 16 39 H 0.05 2.16 5.47 -2.39 -0.01 2.15 16 40 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 41 H 0.17 3.21 4.96 -2.91 -0.01 3.19 16 42 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.10 3.63 6.69 -2.91 -0.02 3.61 16 44 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 45 H 0.41 5.87 9.06 -74.06 -0.67 5.20 16 46 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -83.85 367.37 4.19 -79.65 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.25 Total: 23.37 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.68 Total: -21.41 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.35 Total: -86.42 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.27 Total: -43.31 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Total: -83.85 4.19 -79.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492491055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.413 kcal (2) G-P(sol) polarization free energy of solvation -83.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds