Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46923 * 2 1 4 4 C 1.53000 * 109.47020 * 119.99568 * 2 1 3 5 5 C 1.52996 * 109.47169 * 174.99722 * 4 2 1 6 6 N 1.46502 * 109.47354 * 180.02562 * 5 4 2 7 7 C 1.46496 * 119.99673 * 90.00154 * 6 5 4 8 8 C 1.50703 * 109.47120 * 90.00568 * 7 6 5 9 9 H 1.08002 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00167 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99798 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00233 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46846 * 59.99735 * 12 10 8 14 14 H 1.48496 * 109.47263 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46979 * 299.99987 * 12 10 8 16 16 C 1.34773 * 119.99751 * 270.00475 * 6 5 4 17 17 O 1.21717 * 120.00393 * 359.97438 * 16 6 5 18 18 C 1.46268 * 119.99651 * 179.97438 * 16 6 5 19 19 C 1.34972 * 119.99729 * 173.22711 * 18 16 6 20 20 C 1.47005 * 120.00532 * 349.03356 * 19 18 16 21 21 C 1.39971 * 120.10649 * 316.06897 * 20 19 18 22 22 C 1.37668 * 119.87807 * 179.76423 * 21 20 19 23 23 C 1.39016 * 120.11629 * 0.53780 * 22 21 20 24 24 O 1.35741 * 119.88410 * 179.72417 * 23 22 21 25 25 C 1.39018 * 120.22744 * 359.69074 * 23 22 21 26 26 C 1.37658 * 120.11510 * 0.04875 * 25 23 22 27 27 H 1.09001 * 109.47249 * 300.00178 * 1 2 3 28 28 H 1.09003 * 109.47370 * 59.99779 * 1 2 3 29 29 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46909 * 240.00073 * 2 1 3 31 31 H 1.08995 * 109.47268 * 60.00293 * 3 2 1 32 32 H 1.09001 * 109.46776 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47214 * 299.99789 * 3 2 1 34 34 H 1.09002 * 109.46561 * 55.00369 * 4 2 1 35 35 H 1.08998 * 109.47721 * 295.00103 * 4 2 1 36 36 H 1.09007 * 109.46867 * 60.00335 * 5 4 2 37 37 H 1.09004 * 109.47478 * 300.00528 * 5 4 2 38 38 H 1.09002 * 109.47040 * 209.99927 * 7 6 5 39 39 H 1.08993 * 109.47507 * 330.00203 * 7 6 5 40 40 H 0.96999 * 119.99785 * 179.97438 * 11 10 8 41 41 H 1.07997 * 119.99794 * 353.22737 * 18 16 6 42 42 H 1.08008 * 120.00115 * 169.03514 * 19 18 16 43 43 H 1.07998 * 120.06194 * 0.02562 * 21 20 19 44 44 H 1.08007 * 119.93956 * 180.23086 * 22 21 20 45 45 H 0.96698 * 113.99237 * 269.96564 * 24 23 22 46 46 H 1.08000 * 119.94190 * 180.02562 * 25 23 22 47 47 H 1.07996 * 120.06321 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0531 -1.5221 2.3840 7 6 4.1929 -2.9804 2.3814 8 6 5.5754 -3.3516 1.9102 9 1 6.2793 -2.5786 1.6393 10 6 5.9416 -4.6781 1.8249 11 7 5.0846 -5.6194 2.1553 12 14 7.6550 -5.1383 1.2402 13 1 8.6654 -4.5450 2.1527 14 1 7.7972 -6.6164 1.2389 15 1 7.8647 -4.6191 -0.1352 16 6 4.3735 -0.8162 3.4864 17 8 4.2577 0.3954 3.4884 18 6 4.8605 -1.5063 4.6806 19 6 5.3103 -0.7941 5.7353 20 6 5.5387 0.6520 5.6021 21 6 6.1826 1.1596 4.4677 22 6 6.3898 2.5151 4.3456 23 6 5.9708 3.3782 5.3516 24 8 6.1825 4.7133 5.2289 25 6 5.3352 2.8786 6.4826 26 6 5.1184 1.5254 6.6120 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6053 -1.7197 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9994 0.1676 1.1421 37 1 3.8532 -1.3940 0.3003 38 1 4.0385 -3.3619 3.3907 39 1 3.4516 -3.4153 1.7112 40 1 5.3422 -6.5527 2.0950 41 1 4.8602 -2.5856 4.7185 42 1 5.5024 -1.2866 6.6771 43 1 6.5124 0.4895 3.6876 44 1 6.8831 2.9082 3.4689 45 1 7.0261 5.0129 5.5946 46 1 5.0112 3.5533 7.2612 47 1 4.6249 1.1381 7.4911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492611729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = -44.757889 kcal Electronic energy + Delta-G solvation = -26846.218514 eV Core-core repulsion = 23187.357946 eV Total energy + Delta-G solvation = -3658.860568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79138 -38.91873 -36.97169 -36.23557 -34.70415 -32.97735 -32.51670 -30.72544 -29.55831 -28.20689 -27.00692 -26.90570 -24.14459 -23.10457 -22.59291 -22.19541 -20.46540 -19.70396 -18.26115 -17.89245 -16.87357 -16.49979 -15.73836 -15.37148 -15.24552 -14.95694 -14.76228 -14.47935 -13.97983 -13.78880 -13.64797 -13.31402 -13.01916 -12.92427 -12.64147 -12.37294 -12.23552 -12.09067 -11.99015 -11.77107 -11.60822 -11.47839 -11.13073 -11.01593 -10.94739 -10.70965 -10.68379 -10.46911 -10.25892 -10.25426 -10.00809 -9.75773 -9.43114 -9.09840 -8.61565 -8.55374 -7.64502 -7.59209 -6.20956 -4.28649 1.06485 1.74227 2.17430 3.22017 3.27247 3.29848 3.96183 3.97669 4.06645 4.32332 4.38571 5.06673 5.10124 5.12102 5.15366 5.15845 5.17552 5.21265 5.38955 5.61884 5.66467 5.75066 5.82584 5.85728 5.92377 5.97566 6.01288 6.03910 6.09427 6.14223 6.28290 6.29140 6.35412 6.41170 6.42691 6.56649 6.66012 6.68952 6.70989 6.75187 6.84402 6.98407 7.09363 7.17283 7.55164 7.74014 7.79038 8.02763 8.34359 8.77036 9.04385 9.39477 10.85397 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008283 B = 0.004836 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.479957 B = 5788.669971 C = 8107.986093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.126 4.126 5 C 0.120 3.880 6 N -0.586 5.586 7 C 0.236 3.764 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.534 3.466 17 O -0.559 6.559 18 C -0.169 4.169 19 C -0.069 4.069 20 C -0.056 4.056 21 C -0.016 4.016 22 C -0.156 4.156 23 C 0.100 3.900 24 O -0.503 6.503 25 C -0.161 4.161 26 C -0.093 4.093 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.383 0.617 46 H 0.120 0.880 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 11.678 4.299 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.315 5.315 7 C 0.116 3.884 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.325 3.675 17 O -0.442 6.442 18 C -0.189 4.189 19 C -0.089 4.089 20 C -0.056 4.056 21 C -0.034 4.034 22 C -0.175 4.175 23 C 0.056 3.944 24 O -0.312 6.312 25 C -0.180 4.180 26 C -0.112 4.112 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.238 0.762 46 H 0.138 0.862 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.133 12.040 3.990 12.862 hybrid contribution 1.290 -0.650 -0.244 1.465 sum -0.843 11.390 3.747 12.020 Atomic orbital electron populations 1.21820 0.95602 1.01502 1.01259 1.21049 0.95365 0.96361 0.98497 1.21863 1.01457 0.95897 1.01106 1.21980 0.96524 1.00384 0.97616 1.21354 0.92987 0.97865 0.88179 1.48221 1.61642 1.10003 1.11586 1.19471 0.97295 0.73163 0.98484 1.21453 0.98361 0.92080 1.45625 0.92218 1.24930 0.97549 0.96235 0.95024 1.69912 1.35004 1.00460 1.47619 0.86583 0.84265 0.77320 0.79481 1.20071 1.21128 1.20145 1.18368 0.78474 0.86739 0.83933 1.90793 1.56126 1.13627 1.83648 1.23433 1.00604 1.01470 0.93401 1.22203 0.96820 0.92073 0.97755 1.18932 0.99012 0.93105 0.94600 1.21003 0.93468 0.94415 0.94538 1.21143 1.03499 0.93373 0.99469 1.18540 0.99401 0.82345 0.94074 1.84789 1.42682 1.20228 1.83516 1.21081 1.03461 0.95547 0.97894 1.20991 0.99400 0.92484 0.98292 0.92927 0.93090 0.92793 0.91250 0.92784 0.92316 0.93360 0.91936 0.91980 0.90790 0.90735 0.94302 0.94658 0.92447 0.83755 0.85192 0.86277 0.86170 0.76231 0.86186 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.37 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.53 16 3 C -0.15 -1.92 8.95 37.16 0.33 -1.58 16 4 C -0.13 -2.04 5.01 -26.73 -0.13 -2.18 16 5 C 0.12 2.19 5.16 -4.04 -0.02 2.17 16 6 N -0.59 -12.09 2.46 -176.76 -0.43 -12.53 16 7 C 0.24 5.46 4.92 -5.19 -0.03 5.43 16 8 C -0.54 -13.63 9.39 -34.44 -0.32 -13.96 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 12 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.53 10.87 6.65 -13.04 -0.09 10.79 16 17 O -0.56 -11.89 11.74 5.17 0.06 -11.83 16 18 C -0.17 -3.10 9.14 -37.52 -0.34 -3.44 16 19 C -0.07 -1.08 9.80 -37.19 -0.36 -1.45 16 20 C -0.06 -0.92 4.53 -105.05 -0.48 -1.40 16 21 C -0.02 -0.27 6.59 -39.14 -0.26 -0.53 16 22 C -0.16 -2.47 9.97 -39.50 -0.39 -2.87 16 23 C 0.10 1.48 6.71 -39.00 -0.26 1.22 16 24 O -0.50 -6.42 13.49 -18.93 -0.26 -6.67 16 25 C -0.16 -2.25 9.97 -39.50 -0.39 -2.65 16 26 C -0.09 -1.34 9.79 -39.14 -0.38 -1.73 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.38 5.84 -51.93 -0.30 1.07 16 37 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.04 0.92 6.02 -51.93 -0.31 0.61 16 39 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.14 2.72 6.14 -52.49 -0.32 2.40 16 42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.12 2.20 7.03 -52.49 -0.37 1.83 16 44 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.38 2.81 9.06 45.56 0.41 3.22 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -29.53 386.25 -8.94 -38.46 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.69 Total: 8.32 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.15 Total: -13.46 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.30 Total: -35.87 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.19 Total: -18.50 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.53 -8.94 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492611729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.296 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds