Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46923 * 2 1 4 4 C 1.53000 * 109.47020 * 119.99568 * 2 1 3 5 5 C 1.52996 * 109.47169 * 174.99722 * 4 2 1 6 6 N 1.46502 * 109.47354 * 180.02562 * 5 4 2 7 7 C 1.46496 * 119.99673 * 90.00154 * 6 5 4 8 8 C 1.50703 * 109.47120 * 90.00568 * 7 6 5 9 9 H 1.08002 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00167 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99798 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00233 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46846 * 59.99735 * 12 10 8 14 14 H 1.48496 * 109.47263 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46979 * 299.99987 * 12 10 8 16 16 C 1.34773 * 119.99751 * 270.00475 * 6 5 4 17 17 O 1.21717 * 120.00393 * 359.97438 * 16 6 5 18 18 C 1.46268 * 119.99651 * 179.97438 * 16 6 5 19 19 C 1.34972 * 119.99729 * 173.22711 * 18 16 6 20 20 C 1.47005 * 120.00532 * 349.03356 * 19 18 16 21 21 C 1.39971 * 120.10649 * 316.06897 * 20 19 18 22 22 C 1.37668 * 119.87807 * 179.76423 * 21 20 19 23 23 C 1.39016 * 120.11629 * 0.53780 * 22 21 20 24 24 O 1.35741 * 119.88410 * 179.72417 * 23 22 21 25 25 C 1.39018 * 120.22744 * 359.69074 * 23 22 21 26 26 C 1.37658 * 120.11510 * 0.04875 * 25 23 22 27 27 H 1.09001 * 109.47249 * 300.00178 * 1 2 3 28 28 H 1.09003 * 109.47370 * 59.99779 * 1 2 3 29 29 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46909 * 240.00073 * 2 1 3 31 31 H 1.08995 * 109.47268 * 60.00293 * 3 2 1 32 32 H 1.09001 * 109.46776 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47214 * 299.99789 * 3 2 1 34 34 H 1.09002 * 109.46561 * 55.00369 * 4 2 1 35 35 H 1.08998 * 109.47721 * 295.00103 * 4 2 1 36 36 H 1.09007 * 109.46867 * 60.00335 * 5 4 2 37 37 H 1.09004 * 109.47478 * 300.00528 * 5 4 2 38 38 H 1.09002 * 109.47040 * 209.99927 * 7 6 5 39 39 H 1.08993 * 109.47507 * 330.00203 * 7 6 5 40 40 H 0.96999 * 119.99785 * 179.97438 * 11 10 8 41 41 H 1.07997 * 119.99794 * 353.22737 * 18 16 6 42 42 H 1.08008 * 120.00115 * 169.03514 * 19 18 16 43 43 H 1.07998 * 120.06194 * 0.02562 * 21 20 19 44 44 H 1.08007 * 119.93956 * 180.23086 * 22 21 20 45 45 H 0.96698 * 113.99237 * 269.96564 * 24 23 22 46 46 H 1.08000 * 119.94190 * 180.02562 * 25 23 22 47 47 H 1.07996 * 120.06321 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0531 -1.5221 2.3840 7 6 4.1929 -2.9804 2.3814 8 6 5.5754 -3.3516 1.9102 9 1 6.2793 -2.5786 1.6393 10 6 5.9416 -4.6781 1.8249 11 7 5.0846 -5.6194 2.1553 12 14 7.6550 -5.1383 1.2402 13 1 8.6654 -4.5450 2.1527 14 1 7.7972 -6.6164 1.2389 15 1 7.8647 -4.6191 -0.1352 16 6 4.3735 -0.8162 3.4864 17 8 4.2577 0.3954 3.4884 18 6 4.8605 -1.5063 4.6806 19 6 5.3103 -0.7941 5.7353 20 6 5.5387 0.6520 5.6021 21 6 6.1826 1.1596 4.4677 22 6 6.3898 2.5151 4.3456 23 6 5.9708 3.3782 5.3516 24 8 6.1825 4.7133 5.2289 25 6 5.3352 2.8786 6.4826 26 6 5.1184 1.5254 6.6120 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6053 -1.7197 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9994 0.1676 1.1421 37 1 3.8532 -1.3940 0.3003 38 1 4.0385 -3.3619 3.3907 39 1 3.4516 -3.4153 1.7112 40 1 5.3422 -6.5527 2.0950 41 1 4.8602 -2.5856 4.7185 42 1 5.5024 -1.2866 6.6771 43 1 6.5124 0.4895 3.6876 44 1 6.8831 2.9082 3.4689 45 1 7.0261 5.0129 5.5946 46 1 5.0112 3.5533 7.2612 47 1 4.6249 1.1381 7.4911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492611729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = -60.349854 kcal Electronic energy + Delta-G solvation = -26846.894632 eV Core-core repulsion = 23187.357946 eV Total energy + Delta-G solvation = -3659.536686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18306 -40.21578 -38.19897 -37.42283 -36.32400 -34.51354 -34.18502 -31.90002 -30.95709 -29.58712 -28.65062 -28.03428 -25.47797 -24.98183 -23.85609 -23.40812 -21.79005 -20.90002 -19.43465 -19.33555 -18.55287 -18.28532 -17.23372 -16.67666 -16.41112 -16.32260 -16.14350 -16.01750 -15.39484 -15.08018 -14.85402 -14.50963 -14.42958 -14.23052 -14.14052 -13.84646 -13.69666 -13.46915 -13.19975 -13.14042 -12.87826 -12.82696 -12.75226 -12.61741 -12.32506 -12.24793 -11.99190 -11.95589 -11.59045 -11.55667 -11.43436 -11.35838 -10.81832 -10.60682 -10.51185 -9.82861 -9.29518 -8.87085 -8.19876 -6.34949 -0.20750 0.55650 0.91067 1.41768 1.42467 1.50342 2.31770 2.48080 2.52369 2.86311 3.09685 3.34475 3.80762 3.88052 3.95220 3.97118 4.04474 4.06198 4.10146 4.34239 4.46348 4.54640 4.56839 4.67361 4.72100 4.75158 4.79968 4.91072 4.93521 4.97712 5.00222 5.08833 5.10691 5.13647 5.14807 5.24625 5.29022 5.31271 5.44477 5.48506 5.52039 5.55542 5.65794 5.75279 5.91213 5.98956 6.06265 6.59744 6.83583 6.90780 7.33496 7.47431 8.84901 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008283 B = 0.004836 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.479957 B = 5788.669971 C = 8107.986093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.114 4.114 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.253 3.747 8 C -0.544 4.544 9 H 0.049 0.951 10 C 0.024 3.976 11 N -0.919 5.919 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.533 3.467 17 O -0.572 6.572 18 C -0.210 4.210 19 C -0.031 4.031 20 C -0.085 4.085 21 C -0.032 4.032 22 C -0.173 4.173 23 C 0.106 3.894 24 O -0.509 6.509 25 C -0.162 4.162 26 C -0.085 4.085 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.134 0.866 42 H 0.168 0.832 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.409 0.591 46 H 0.149 0.851 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 13.111 5.365 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.153 4.153 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.132 3.868 8 C -0.583 4.583 9 H 0.067 0.933 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.779 3.221 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.199 1.199 16 C 0.324 3.676 17 O -0.456 6.456 18 C -0.230 4.230 19 C -0.050 4.050 20 C -0.085 4.085 21 C -0.050 4.050 22 C -0.191 4.191 23 C 0.062 3.938 24 O -0.322 6.322 25 C -0.180 4.180 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.152 0.848 42 H 0.186 0.814 43 H 0.111 0.889 44 H 0.141 0.859 45 H 0.268 0.732 46 H 0.167 0.833 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.005 13.499 5.061 14.556 hybrid contribution 1.302 -0.910 -0.496 1.665 sum -0.703 12.589 4.565 13.410 Atomic orbital electron populations 1.21785 0.93935 1.01896 1.02166 1.21053 0.96730 0.96241 0.96994 1.21820 1.00591 0.95703 1.01786 1.21860 0.94745 1.00087 0.98592 1.21417 0.94499 0.97086 0.87283 1.48218 1.62459 1.09071 1.12598 1.19080 0.95761 0.74624 0.97292 1.21610 0.99075 0.92055 1.45531 0.93318 1.25607 1.00819 0.96134 0.95073 1.70001 1.36588 1.00736 1.48485 0.85668 0.80244 0.77181 0.78959 1.19686 1.20489 1.19927 1.18694 0.77934 0.86685 0.84245 1.90773 1.56833 1.14014 1.83993 1.23248 1.04718 1.01027 0.94037 1.22633 0.92406 0.91981 0.98022 1.19106 1.00420 0.93659 0.95294 1.20887 0.94826 0.94764 0.94551 1.21266 1.04291 0.93194 1.00372 1.18635 0.98510 0.82912 0.93738 1.84719 1.44617 1.18934 1.83954 1.21425 1.02557 0.95887 0.98174 1.21331 0.98169 0.92485 0.98334 0.93067 0.91118 0.92700 0.90751 0.93607 0.93621 0.91098 0.92723 0.93419 0.91278 0.91364 0.95067 0.96472 0.92275 0.84812 0.81425 0.88892 0.85879 0.73246 0.83323 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 2 C -0.09 -2.43 2.92 -10.79 -0.03 -2.46 16 3 C -0.14 -3.65 8.95 71.98 0.64 -3.01 16 4 C -0.11 -3.81 5.01 30.59 0.15 -3.66 16 5 C 0.12 4.62 5.16 86.38 0.45 5.06 16 6 N -0.59 -25.79 2.46 -831.35 -2.04 -27.84 16 7 C 0.25 12.30 4.92 85.63 0.42 12.72 16 8 C -0.54 -28.53 9.39 25.60 0.24 -28.29 16 9 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 10 C 0.02 1.27 5.46 84.65 0.46 1.73 16 11 N -0.92 -50.41 13.29 21.45 0.28 -50.12 16 12 Si 0.95 41.79 29.54 68.60 2.03 43.81 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 C 0.53 22.55 6.65 86.33 0.57 23.13 16 17 O -0.57 -25.11 11.74 -4.40 -0.05 -25.16 16 18 C -0.21 -7.91 9.14 23.61 0.22 -7.69 16 19 C -0.03 -0.95 9.80 23.82 0.23 -0.71 16 20 C -0.08 -2.67 4.53 -20.14 -0.09 -2.77 16 21 C -0.03 -1.11 6.59 22.56 0.15 -0.96 16 22 C -0.17 -5.42 9.97 22.32 0.22 -5.20 16 23 C 0.11 2.93 6.71 22.64 0.15 3.08 16 24 O -0.51 -11.68 13.49 -90.65 -1.22 -12.90 16 25 C -0.16 -4.02 9.97 22.32 0.22 -3.80 16 26 C -0.09 -2.21 9.79 22.55 0.22 -1.99 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.28 6.56 -2.39 -0.02 1.26 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.71 5.84 -2.38 -0.01 2.69 16 37 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 38 H 0.03 1.56 6.02 -2.39 -0.01 1.55 16 39 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 40 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.13 5.27 6.14 -2.91 -0.02 5.25 16 42 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.09 3.65 7.03 -2.91 -0.02 3.63 16 44 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 45 H 0.41 4.79 9.06 -74.06 -0.67 4.12 16 46 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -64.37 386.25 4.18 -60.19 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.29 Total: 29.33 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.90 Total: -17.31 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.76 Total: -77.96 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.27 Total: -38.07 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -64.37 4.18 -60.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492611729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.160 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds