Wall clock time and date at job start Tue Mar 31 2020 11:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99980 * 2 1 4 4 C 1.38907 * 119.97033 * 359.97438 * 3 2 1 5 5 C 1.38289 * 120.28433 * 179.97438 * 4 3 2 6 6 C 1.37933 * 120.23825 * 0.02622 * 5 4 3 7 7 C 1.39830 * 119.93742 * 359.97405 * 6 5 4 8 8 C 1.47219 * 120.14527 * 179.97438 * 7 6 5 9 9 C 1.34797 * 119.99838 * 0.02562 * 8 7 6 10 10 C 1.46435 * 120.00166 * 180.02562 * 9 8 7 11 11 O 1.21703 * 119.99683 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00238 * 179.72509 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27527 * 12 10 9 14 14 C 1.52996 * 109.46681 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46992 * 299.99452 * 14 13 12 16 16 C 1.52993 * 109.47598 * 59.99768 * 14 13 12 17 17 C 1.53000 * 109.46741 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.46983 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00145 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99767 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00097 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99836 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46919 * 60.00158 * 22 20 18 24 24 H 1.48496 * 109.47105 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47194 * 300.00221 * 22 20 18 26 26 C 1.38380 * 119.96979 * 180.25205 * 3 2 1 27 27 H 1.09001 * 109.46961 * 59.99742 * 1 2 3 28 28 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47436 * 300.00202 * 1 2 3 30 30 H 1.07992 * 119.85519 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.87627 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.03609 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.99784 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.00377 * 359.97438 * 9 8 7 35 35 H 0.97000 * 119.99736 * 0.26802 * 12 10 9 36 36 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 37 37 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 38 38 H 1.08998 * 109.47301 * 60.00473 * 15 14 13 39 39 H 1.09001 * 109.47119 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47313 * 300.00024 * 15 14 13 41 41 H 1.09006 * 109.47169 * 59.99609 * 16 14 13 42 42 H 1.09001 * 109.47449 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47377 * 299.99945 * 16 14 13 44 44 H 1.08999 * 109.47457 * 299.99696 * 17 14 13 45 45 H 1.08997 * 109.47600 * 59.99954 * 17 14 13 46 46 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.11908 * 0.02684 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 0.0000 6 6 3.2866 3.6966 0.0005 7 6 4.0582 2.5304 0.0011 8 6 5.5278 2.6163 0.0010 9 6 6.1325 3.8210 0.0010 10 6 7.5944 3.9065 0.0005 11 8 8.2634 2.8898 0.0005 12 7 8.1990 5.1110 -0.0052 13 6 9.6615 5.1965 -0.0118 14 6 10.0864 6.6663 -0.0179 15 6 9.5298 7.3528 -1.2668 16 6 9.5407 7.3602 1.2316 17 6 11.6138 6.7555 -0.0243 18 6 12.0323 8.2032 -0.0309 19 1 11.2838 8.9817 -0.0311 20 6 13.3709 8.5338 -0.0368 21 7 14.2824 7.5857 -0.0371 22 14 13.8898 10.3283 -0.0443 23 1 13.3591 11.0020 1.1681 24 1 15.3722 10.4149 -0.0506 25 1 13.3503 10.9945 -1.2570 26 6 3.4279 1.2826 -0.0053 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2106 2.3157 -0.0014 31 1 1.3148 4.5124 -0.0008 32 1 3.7682 4.6632 0.0005 33 1 6.1215 1.7140 0.0019 34 1 5.5389 4.7233 0.0006 35 1 7.6658 5.9213 -0.0049 36 1 10.0581 4.7069 0.8776 37 1 10.0503 4.7025 -0.9023 38 1 8.4416 7.2893 -1.2619 39 1 9.8328 8.3999 -1.2714 40 1 9.9186 6.8585 -2.1570 41 1 9.9372 6.8710 2.1214 42 1 9.8438 8.4072 1.2274 43 1 8.4526 7.2966 1.2366 44 1 12.0101 6.2665 0.8656 45 1 12.0030 6.2611 -0.9143 46 1 15.2241 7.8184 -0.0409 47 1 4.0175 0.3778 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492832066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:47 Heat of formation + Delta-G solvation = -51.410321 kcal Electronic energy + Delta-G solvation = -24961.805890 eV Core-core repulsion = 21302.656851 eV Total energy + Delta-G solvation = -3659.149039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51062 -39.58956 -38.04612 -37.09222 -33.95501 -33.57784 -32.08114 -31.28279 -29.60986 -27.79737 -27.15126 -26.51042 -26.39637 -24.11073 -22.99564 -22.68692 -21.00970 -19.71955 -18.30441 -18.09408 -17.09635 -16.68578 -16.32697 -16.16505 -16.09479 -15.33693 -14.99280 -14.80184 -14.50971 -14.13330 -13.90162 -13.59659 -13.41970 -13.24255 -13.11804 -12.77880 -12.74129 -12.18462 -12.16452 -12.04456 -11.84369 -11.72123 -11.21600 -11.15928 -11.00192 -10.86877 -10.62900 -10.45603 -10.40135 -10.26586 -9.87158 -9.86479 -9.17113 -8.93181 -8.89083 -8.70304 -8.42405 -8.35185 -5.99300 -4.00761 0.25940 1.06112 1.79124 2.81039 3.30144 3.32346 3.37855 3.38594 3.48848 3.61627 4.35092 4.38381 4.45769 4.58425 4.66162 4.68384 4.78463 4.89094 5.00456 5.05702 5.10846 5.28760 5.36008 5.51246 5.52666 5.63203 5.75129 5.79348 5.86141 6.01210 6.07563 6.17339 6.23425 6.29176 6.35400 6.37208 6.39866 6.57291 6.63023 6.77327 6.96027 7.06298 7.07779 7.13068 7.64360 7.76842 7.76969 7.99212 8.39961 8.44581 9.03775 9.62242 11.12056 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040992 B = 0.001803 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.901627 B =15524.631408 C =16005.821646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.203 4.203 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.028 4.028 8 C -0.036 4.036 9 C -0.191 4.191 10 C 0.537 3.463 11 O -0.549 6.549 12 N -0.714 5.714 13 C 0.127 3.873 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.260 0.740 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.294 -9.764 0.086 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.222 4.222 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.028 4.028 8 C -0.056 4.056 9 C -0.211 4.211 10 C 0.325 3.675 11 O -0.429 6.429 12 N -0.365 5.365 13 C 0.004 3.996 14 C -0.074 4.074 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.505 -10.687 0.084 30.443 hybrid contribution -0.147 1.576 -0.002 1.582 sum -28.652 -9.112 0.082 30.066 Atomic orbital electron populations 1.23071 0.78266 1.04073 1.01374 1.86090 1.21473 1.26788 1.88762 1.18891 0.92163 0.84292 0.96748 1.21361 1.00115 0.92406 1.08299 1.20879 0.94491 0.97067 0.97450 1.21366 0.93737 0.98145 1.02636 1.18812 0.92704 0.92480 0.98802 1.22292 0.91631 0.98830 0.92863 1.23082 0.94198 0.98845 1.05025 1.18306 0.88076 0.83875 0.77268 1.90814 1.66568 1.35039 1.50482 1.46110 1.08954 1.07658 1.73751 1.21648 0.77646 0.98353 1.01905 1.20911 1.00479 0.90867 0.95105 1.21763 0.97267 1.02113 0.97302 1.21764 0.97298 1.02090 0.97296 1.19086 0.86186 0.97349 0.97509 1.21148 0.91430 0.92033 1.50453 0.92316 1.25016 0.96930 0.96999 0.95544 1.69956 1.00691 1.31973 1.50723 0.86703 0.77413 0.85628 0.78493 1.20342 1.21406 1.20347 1.20615 0.91470 0.98021 1.04875 0.92595 0.88138 0.92585 0.85399 0.85380 0.85137 0.84379 0.85338 0.76567 0.91707 0.91710 0.95223 0.91429 0.93348 0.93348 0.91427 0.95228 0.96324 0.96331 0.92986 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.49 -19.44 -0.20 -2.95 16 3 C 0.12 1.13 6.68 -39.28 -0.26 0.87 16 4 C -0.20 -1.53 9.04 -39.32 -0.36 -1.88 16 5 C -0.08 -0.59 10.02 -39.67 -0.40 -0.99 16 6 C -0.14 -1.17 9.41 -39.10 -0.37 -1.54 16 7 C -0.03 -0.27 5.87 -105.07 -0.62 -0.89 16 8 C -0.04 -0.39 9.46 -37.16 -0.35 -0.75 16 9 C -0.19 -2.13 9.41 -37.50 -0.35 -2.49 16 10 C 0.54 8.12 7.74 -12.96 -0.10 8.02 16 11 O -0.55 -10.49 16.23 5.19 0.08 -10.40 16 12 N -0.71 -10.39 4.95 -61.70 -0.31 -10.69 16 13 C 0.13 2.26 4.56 -4.04 -0.02 2.25 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.13 -1.27 9.73 -38.95 -0.38 -1.65 16 27 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.13 0.66 6.28 -52.49 -0.33 0.33 16 31 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.13 0.88 6.16 -52.49 -0.32 0.55 16 33 H 0.14 1.59 7.52 -52.49 -0.39 1.20 16 34 H 0.13 1.06 6.07 -52.49 -0.32 0.74 16 35 H 0.40 4.79 6.14 -40.82 -0.25 4.54 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 39 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -32.53 382.87 -8.16 -40.69 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.05 Total: 1.94 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.17 Total: -14.82 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.43 Total: -36.36 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.12 Total: -13.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.53 -8.16 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492832066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.725 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds