Wall clock time and date at job start Tue Mar 31 2020 11:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99980 * 2 1 4 4 C 1.38907 * 119.97033 * 359.97438 * 3 2 1 5 5 C 1.38289 * 120.28433 * 179.97438 * 4 3 2 6 6 C 1.37933 * 120.23825 * 0.02622 * 5 4 3 7 7 C 1.39830 * 119.93742 * 359.97405 * 6 5 4 8 8 C 1.47219 * 120.14527 * 179.97438 * 7 6 5 9 9 C 1.34797 * 119.99838 * 0.02562 * 8 7 6 10 10 C 1.46435 * 120.00166 * 180.02562 * 9 8 7 11 11 O 1.21703 * 119.99683 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00238 * 179.72509 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27527 * 12 10 9 14 14 C 1.52996 * 109.46681 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46992 * 299.99452 * 14 13 12 16 16 C 1.52993 * 109.47598 * 59.99768 * 14 13 12 17 17 C 1.53000 * 109.46741 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.46983 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00145 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99767 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00097 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99836 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46919 * 60.00158 * 22 20 18 24 24 H 1.48496 * 109.47105 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47194 * 300.00221 * 22 20 18 26 26 C 1.38380 * 119.96979 * 180.25205 * 3 2 1 27 27 H 1.09001 * 109.46961 * 59.99742 * 1 2 3 28 28 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47436 * 300.00202 * 1 2 3 30 30 H 1.07992 * 119.85519 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.87627 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.03609 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.99784 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.00377 * 359.97438 * 9 8 7 35 35 H 0.97000 * 119.99736 * 0.26802 * 12 10 9 36 36 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 37 37 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 38 38 H 1.08998 * 109.47301 * 60.00473 * 15 14 13 39 39 H 1.09001 * 109.47119 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47313 * 300.00024 * 15 14 13 41 41 H 1.09006 * 109.47169 * 59.99609 * 16 14 13 42 42 H 1.09001 * 109.47449 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47377 * 299.99945 * 16 14 13 44 44 H 1.08999 * 109.47457 * 299.99696 * 17 14 13 45 45 H 1.08997 * 109.47600 * 59.99954 * 17 14 13 46 46 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.11908 * 0.02684 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3755 -0.0005 5 6 1.9099 3.6111 0.0000 6 6 3.2866 3.6966 0.0005 7 6 4.0582 2.5304 0.0011 8 6 5.5278 2.6163 0.0010 9 6 6.1325 3.8210 0.0010 10 6 7.5944 3.9065 0.0005 11 8 8.2634 2.8898 0.0005 12 7 8.1990 5.1110 -0.0052 13 6 9.6615 5.1965 -0.0118 14 6 10.0864 6.6663 -0.0179 15 6 9.5298 7.3528 -1.2668 16 6 9.5407 7.3602 1.2316 17 6 11.6138 6.7555 -0.0243 18 6 12.0323 8.2032 -0.0309 19 1 11.2838 8.9817 -0.0311 20 6 13.3709 8.5338 -0.0368 21 7 14.2824 7.5857 -0.0371 22 14 13.8898 10.3283 -0.0443 23 1 13.3591 11.0020 1.1681 24 1 15.3722 10.4149 -0.0506 25 1 13.3503 10.9945 -1.2570 26 6 3.4279 1.2826 -0.0053 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2106 2.3157 -0.0014 31 1 1.3148 4.5124 -0.0008 32 1 3.7682 4.6632 0.0005 33 1 6.1215 1.7140 0.0019 34 1 5.5389 4.7233 0.0006 35 1 7.6658 5.9213 -0.0049 36 1 10.0581 4.7069 0.8776 37 1 10.0503 4.7025 -0.9023 38 1 8.4416 7.2893 -1.2619 39 1 9.8328 8.3999 -1.2714 40 1 9.9186 6.8585 -2.1570 41 1 9.9372 6.8710 2.1214 42 1 9.8438 8.4072 1.2274 43 1 8.4526 7.2966 1.2366 44 1 12.0101 6.2665 0.8656 45 1 12.0030 6.2611 -0.9143 46 1 15.2241 7.8184 -0.0409 47 1 4.0175 0.3778 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492832066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:46 Heat of formation + Delta-G solvation = -70.854034 kcal Electronic energy + Delta-G solvation = -24962.649032 eV Core-core repulsion = 21302.656851 eV Total energy + Delta-G solvation = -3659.992182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14463 -40.80210 -38.84584 -38.44465 -35.23652 -34.75885 -33.90019 -31.89665 -30.37790 -29.08171 -28.22612 -27.94060 -27.71981 -25.42698 -24.19558 -23.57878 -22.00170 -20.76229 -19.68641 -18.80023 -18.36785 -18.16750 -17.27048 -16.98076 -16.64828 -16.50914 -16.35106 -16.30599 -15.66710 -15.09942 -14.93147 -14.82354 -14.54563 -14.38052 -14.14586 -13.91890 -13.87959 -13.72104 -13.40924 -12.82940 -12.79036 -12.74329 -12.57217 -12.44151 -12.30964 -12.22316 -12.20998 -11.99309 -11.78942 -11.52085 -11.22842 -11.18308 -10.90618 -10.80908 -10.49521 -10.09401 -9.49996 -9.09709 -8.12647 -6.20762 -0.50169 0.46092 0.98204 1.43666 1.45925 1.53126 2.20400 2.29669 2.39573 2.47178 2.88801 3.21631 3.62001 3.81789 3.96207 3.99040 4.08962 4.09717 4.20286 4.24287 4.29149 4.37559 4.40820 4.52493 4.55648 4.70604 4.73590 4.75106 4.79823 4.93222 4.98662 5.08839 5.12444 5.14391 5.23848 5.31559 5.41038 5.45619 5.48226 5.52000 5.55276 5.58775 5.63552 5.76075 5.81879 5.90989 6.31362 6.42790 6.62339 6.94341 7.27085 7.47006 8.99614 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040992 B = 0.001803 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.901627 B =15524.631408 C =16005.821646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.044 4.044 8 C -0.025 4.025 9 C -0.195 4.195 10 C 0.534 3.466 11 O -0.599 6.599 12 N -0.701 5.701 13 C 0.140 3.860 14 C -0.065 4.065 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.039 3.961 18 C -0.515 4.515 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.416 0.584 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.072 0.928 44 H -0.015 1.015 45 H -0.015 1.015 46 H 0.259 0.741 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.310 -7.445 0.091 34.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.217 4.217 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.044 4.044 8 C -0.045 4.045 9 C -0.215 4.215 10 C 0.325 3.675 11 O -0.482 6.482 12 N -0.352 5.352 13 C 0.016 3.984 14 C -0.066 4.066 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.553 4.553 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.169 4.169 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.170 0.830 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.185 0.815 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.003 0.997 45 H 0.003 0.997 46 H 0.068 0.932 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -32.573 -8.335 0.089 33.623 hybrid contribution 0.982 0.706 -0.004 1.210 sum -31.591 -7.629 0.085 32.499 Atomic orbital electron populations 1.23355 0.76277 1.05555 1.02436 1.86061 1.23637 1.26954 1.88812 1.19052 0.92124 0.85172 0.97197 1.21712 1.01399 0.91931 1.06664 1.21270 0.94356 0.98058 0.96185 1.21657 0.94335 0.98253 1.01654 1.18763 0.91837 0.93261 1.00566 1.22307 0.92549 0.98282 0.91353 1.22977 0.91526 1.00394 1.06585 1.18950 0.89688 0.82996 0.75868 1.90797 1.68017 1.36664 1.52709 1.45846 1.07296 1.08536 1.73541 1.21223 0.79883 0.97168 1.00133 1.20716 0.96521 0.92027 0.97298 1.21701 0.99904 1.00757 0.95558 1.21702 0.99943 1.00729 0.95549 1.18975 0.90492 0.96085 0.94281 1.21575 0.91779 0.93060 1.48862 0.90802 1.25974 0.97261 1.01609 0.95459 1.70124 1.00913 1.34440 1.52515 0.85572 0.76637 0.80075 0.79178 1.19096 1.21808 1.19108 1.20730 0.92308 0.98107 1.05779 0.91459 0.86663 0.91450 0.82966 0.82364 0.83088 0.86179 0.81477 0.74540 0.93667 0.93669 0.90877 0.92477 0.94555 0.94558 0.92476 0.90882 0.99677 0.99686 0.93222 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.58 10.49 -92.48 -0.97 -6.55 16 3 C 0.11 1.86 6.68 22.46 0.15 2.01 16 4 C -0.20 -2.40 9.04 22.44 0.20 -2.20 16 5 C -0.08 -0.87 10.02 22.21 0.22 -0.65 16 6 C -0.14 -1.89 9.41 22.58 0.21 -1.68 16 7 C -0.04 -0.80 5.87 -20.16 -0.12 -0.92 16 8 C -0.02 -0.53 9.46 23.84 0.23 -0.30 16 9 C -0.19 -3.97 9.41 23.62 0.22 -3.74 16 10 C 0.53 15.83 7.74 86.38 0.67 16.50 16 11 O -0.60 -23.62 16.23 -4.36 -0.07 -23.69 16 12 N -0.70 -19.29 4.95 -467.33 -2.32 -21.61 16 13 C 0.14 5.08 4.56 86.38 0.39 5.48 16 14 C -0.07 -2.45 0.54 -52.18 -0.03 -2.48 16 15 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 16 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.58 7.65 25.60 0.20 -27.39 16 19 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 20 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 21 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 22 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C -0.15 -2.88 9.73 22.68 0.22 -2.66 16 27 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 28 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 30 H 0.15 1.01 6.28 -2.91 -0.02 0.99 16 31 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.15 1.31 6.16 -2.91 -0.02 1.30 16 33 H 0.12 2.93 7.52 -2.91 -0.02 2.90 16 34 H 0.17 2.02 6.07 -2.91 -0.02 2.00 16 35 H 0.42 8.43 6.14 -92.71 -0.57 7.86 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 39 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 43 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.84 382.87 4.78 -70.06 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.40 Total: 14.82 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.42 Total: -21.46 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.03 Total: -78.73 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.04 Total: -30.24 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.84 4.78 -70.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492832066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds