Wall clock time and date at job start Tue Mar 31 2020 11:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35729 * 117.00223 * 2 1 4 4 C 1.39016 * 119.88855 * 179.97438 * 3 2 1 5 5 C 1.37667 * 120.11497 * 180.02562 * 4 3 2 6 6 C 1.39968 * 119.88512 * 0.02562 * 5 4 3 7 7 C 1.47000 * 120.11364 * 179.97438 * 6 5 4 8 8 C 1.34974 * 120.00189 * 136.35762 * 7 6 5 9 9 C 1.46261 * 119.99768 * 349.03616 * 8 7 6 10 10 O 1.21716 * 120.00085 * 353.22245 * 9 8 7 11 11 N 1.34783 * 120.00055 * 172.93914 * 9 8 7 12 12 C 1.46504 * 119.99888 * 180.27874 * 11 9 8 13 13 C 1.53000 * 109.46812 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47271 * 300.00185 * 13 12 11 15 15 C 1.53004 * 109.46806 * 60.00201 * 13 12 11 16 16 C 1.52992 * 109.46868 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.47195 * 180.02562 * 16 13 12 18 18 H 1.08004 * 119.99846 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00139 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99712 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47540 * 59.99843 * 21 19 17 23 23 H 1.48503 * 109.46927 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47204 * 299.99735 * 21 19 17 25 25 C 1.39970 * 119.77637 * 0.25723 * 6 5 4 26 26 C 1.37664 * 119.87987 * 359.46786 * 25 6 5 27 27 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47101 * 300.00406 * 1 2 3 29 29 H 1.08998 * 109.46856 * 59.99842 * 1 2 3 30 30 H 1.07996 * 119.94453 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.05479 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.00388 * 316.36124 * 7 6 5 33 33 H 1.07995 * 120.00540 * 169.03718 * 8 7 6 34 34 H 0.96996 * 119.99603 * 0.28019 * 11 9 8 35 35 H 1.08991 * 109.46950 * 300.00024 * 12 11 9 36 36 H 1.09004 * 109.46669 * 60.00079 * 12 11 9 37 37 H 1.08998 * 109.47145 * 59.99851 * 14 13 12 38 38 H 1.08998 * 109.47192 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47036 * 299.99730 * 14 13 12 40 40 H 1.08999 * 109.47567 * 59.99803 * 15 13 12 41 41 H 1.08998 * 109.46845 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47133 * 299.99857 * 15 13 12 43 43 H 1.09003 * 109.47302 * 300.00423 * 16 13 12 44 44 H 1.09002 * 109.47294 * 60.00358 * 16 13 12 45 45 H 0.96990 * 119.99935 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.06095 * 179.74261 * 25 6 5 47 47 H 1.08004 * 119.94429 * 180.28193 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4337 1.2793 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3036 3.6788 0.0016 7 6 3.9710 4.9886 0.0028 8 6 3.5240 5.9745 -0.8034 9 6 2.5403 5.6784 -1.8445 10 8 2.2169 4.5261 -2.0662 11 7 1.9877 6.6818 -2.5546 12 6 0.9978 6.3856 -3.5933 13 6 0.5325 7.6910 -4.2415 14 6 -0.0982 8.5921 -3.1780 15 6 1.7319 8.4047 -4.8686 16 6 -0.5007 7.3816 -5.3266 17 6 -0.9585 8.6674 -5.9656 18 1 -0.5528 9.6109 -5.6314 19 6 -1.8946 8.6392 -6.9775 20 7 -2.3884 7.4903 -7.3848 21 14 -2.4616 10.2330 -7.7699 22 1 -1.2970 10.9253 -8.3777 23 1 -3.4645 9.9327 -8.8231 24 1 -3.0745 11.1080 -6.7384 25 6 1.9060 3.6029 0.0071 26 6 1.2859 2.3738 0.0008 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0192 0.3719 0.0014 31 1 5.1423 2.5567 0.0011 32 1 4.8190 5.1621 0.6486 33 1 3.8926 6.9821 -0.6798 34 1 2.2453 7.6001 -2.3780 35 1 1.4471 5.7433 -4.3507 36 1 0.1433 5.8775 -3.1464 37 1 0.6382 8.8124 -2.4052 38 1 -0.4293 9.5223 -3.6397 39 1 -0.9526 8.0836 -2.7313 40 1 2.1813 7.7629 -5.6263 41 1 1.4003 9.3345 -5.3308 42 1 2.4683 8.6251 -4.0959 43 1 -0.0509 6.7398 -6.0842 44 1 -1.3551 6.8729 -4.8803 45 1 -3.0466 7.4705 -8.0969 46 1 1.3151 4.5069 0.0117 47 1 0.2075 2.3141 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492919556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:57 Heat of formation + Delta-G solvation = -38.096328 kcal Electronic energy + Delta-G solvation = -26126.818387 eV Core-core repulsion = 22468.246686 eV Total energy + Delta-G solvation = -3658.571701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31092 -39.53858 -37.74781 -36.85139 -33.60537 -33.42802 -32.08722 -31.06806 -29.39323 -27.46191 -27.06290 -26.52544 -26.25747 -23.84939 -22.82115 -22.23997 -21.20917 -19.57206 -18.32550 -18.02105 -17.16031 -16.38076 -16.15561 -15.81719 -15.62823 -15.07505 -14.77085 -14.58541 -14.31796 -14.04764 -13.72067 -13.59864 -13.22046 -13.13854 -13.02742 -12.73342 -12.58551 -12.11604 -12.09364 -12.06427 -11.66173 -11.26395 -11.16479 -11.01614 -10.88426 -10.85693 -10.64399 -10.41203 -10.27861 -9.88749 -9.73760 -9.66793 -9.18552 -8.95925 -8.93631 -8.53738 -8.36992 -7.73467 -6.01119 -4.02581 0.73939 1.46827 1.89396 3.19586 3.30813 3.36337 3.37293 3.48065 3.57845 3.85316 4.44013 4.68968 4.75869 4.84440 4.94577 5.01208 5.05719 5.26425 5.29021 5.33989 5.34261 5.43579 5.50783 5.61907 5.68152 5.73859 5.91871 5.98384 6.10354 6.16099 6.22041 6.27828 6.34407 6.38650 6.43283 6.57618 6.61588 6.62788 6.73223 6.78688 7.05207 7.06117 7.12107 7.34605 7.62378 7.74978 7.81572 7.97497 8.39029 8.51069 9.02048 9.60545 11.10353 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.002645 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.432137 B =10584.637451 C =11763.887475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.137 3.863 4 C -0.169 4.169 5 C -0.061 4.061 6 C -0.110 4.110 7 C -0.022 4.022 8 C -0.215 4.215 9 C 0.530 3.470 10 O -0.533 6.533 11 N -0.716 5.716 12 C 0.129 3.871 13 C -0.073 4.073 14 C -0.126 4.126 15 C -0.127 4.127 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.009 3.991 26 C -0.217 4.217 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.397 0.603 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.116 0.884 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.542 -7.504 18.197 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.092 3.908 4 C -0.188 4.188 5 C -0.079 4.079 6 C -0.111 4.111 7 C -0.041 4.041 8 C -0.236 4.236 9 C 0.318 3.682 10 O -0.413 6.413 11 N -0.367 5.367 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.009 4.009 26 C -0.236 4.236 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.227 -8.586 17.871 22.785 hybrid contribution -0.563 1.560 -0.668 1.788 sum 10.664 -7.026 17.203 21.425 Atomic orbital electron populations 1.23057 0.78356 1.03745 1.01644 1.85990 1.21471 1.27371 1.88539 1.19166 0.92326 0.83924 0.95410 1.20152 0.91166 0.98365 1.09080 1.20917 0.99143 0.90789 0.97058 1.18731 0.93254 0.92672 1.06421 1.22274 0.95644 0.91333 0.94886 1.23047 1.02082 0.99989 0.98453 1.18443 0.81610 0.85497 0.82650 1.90885 1.62183 1.19802 1.68423 1.46214 1.43113 1.09467 1.37876 1.21591 0.90427 0.98296 0.89041 1.20899 0.97123 0.92419 0.96855 1.21754 0.98978 1.00808 0.96833 1.21761 0.96074 1.01555 0.99041 1.19076 0.92222 0.97124 0.91642 1.21149 1.22926 0.92900 1.18064 0.92319 1.25013 0.96541 0.95897 0.97016 1.69950 1.29880 1.24551 1.29031 0.86711 0.78487 0.83997 0.79105 1.20314 1.21383 1.20329 1.20834 0.93145 0.96642 0.90319 1.21040 0.99852 0.92259 1.10444 0.88384 0.92699 0.92342 0.85567 0.85598 0.84996 0.85225 0.76749 0.91897 0.91965 0.95225 0.91466 0.93440 0.93400 0.91458 0.95221 0.96400 0.96428 0.92969 0.86599 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.48 -18.89 -0.20 -4.16 16 3 C 0.14 1.81 6.70 -39.00 -0.26 1.55 16 4 C -0.17 -2.06 9.97 -39.50 -0.39 -2.45 16 5 C -0.06 -0.70 9.79 -39.14 -0.38 -1.08 16 6 C -0.11 -1.37 4.53 -105.05 -0.48 -1.85 16 7 C -0.02 -0.22 9.80 -37.19 -0.36 -0.58 16 8 C -0.21 -2.29 9.91 -37.52 -0.37 -2.66 16 9 C 0.53 7.70 6.79 -13.03 -0.09 7.61 16 10 O -0.53 -9.54 12.16 5.17 0.06 -9.47 16 11 N -0.72 -10.19 4.95 -61.75 -0.31 -10.50 16 12 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 13 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 17 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.01 0.12 6.59 -39.14 -0.26 -0.14 16 26 C -0.22 -2.89 9.01 -39.50 -0.36 -3.25 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 29 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.40 4.77 6.14 -40.82 -0.25 4.52 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 38 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 42 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 1.59 7.03 -52.49 -0.37 1.22 16 47 H 0.12 1.47 6.27 -52.48 -0.33 1.14 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -32.18 377.89 -8.20 -40.38 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.23 Total: 3.78 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.94 Total: -16.17 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.43 Total: -36.17 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.14 Total: -13.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.18 -8.20 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492919556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.282 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds