Wall clock time and date at job start Tue Mar 31 2020 11:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35729 * 117.00223 * 2 1 4 4 C 1.39016 * 119.88855 * 179.97438 * 3 2 1 5 5 C 1.37667 * 120.11497 * 180.02562 * 4 3 2 6 6 C 1.39968 * 119.88512 * 0.02562 * 5 4 3 7 7 C 1.47000 * 120.11364 * 179.97438 * 6 5 4 8 8 C 1.34974 * 120.00189 * 136.35762 * 7 6 5 9 9 C 1.46261 * 119.99768 * 349.03616 * 8 7 6 10 10 O 1.21716 * 120.00085 * 353.22245 * 9 8 7 11 11 N 1.34783 * 120.00055 * 172.93914 * 9 8 7 12 12 C 1.46504 * 119.99888 * 180.27874 * 11 9 8 13 13 C 1.53000 * 109.46812 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47271 * 300.00185 * 13 12 11 15 15 C 1.53004 * 109.46806 * 60.00201 * 13 12 11 16 16 C 1.52992 * 109.46868 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.47195 * 180.02562 * 16 13 12 18 18 H 1.08004 * 119.99846 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00139 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99712 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47540 * 59.99843 * 21 19 17 23 23 H 1.48503 * 109.46927 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47204 * 299.99735 * 21 19 17 25 25 C 1.39970 * 119.77637 * 0.25723 * 6 5 4 26 26 C 1.37664 * 119.87987 * 359.46786 * 25 6 5 27 27 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47101 * 300.00406 * 1 2 3 29 29 H 1.08998 * 109.46856 * 59.99842 * 1 2 3 30 30 H 1.07996 * 119.94453 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.05479 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.00388 * 316.36124 * 7 6 5 33 33 H 1.07995 * 120.00540 * 169.03718 * 8 7 6 34 34 H 0.96996 * 119.99603 * 0.28019 * 11 9 8 35 35 H 1.08991 * 109.46950 * 300.00024 * 12 11 9 36 36 H 1.09004 * 109.46669 * 60.00079 * 12 11 9 37 37 H 1.08998 * 109.47145 * 59.99851 * 14 13 12 38 38 H 1.08998 * 109.47192 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47036 * 299.99730 * 14 13 12 40 40 H 1.08999 * 109.47567 * 59.99803 * 15 13 12 41 41 H 1.08998 * 109.46845 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47133 * 299.99857 * 15 13 12 43 43 H 1.09003 * 109.47302 * 300.00423 * 16 13 12 44 44 H 1.09002 * 109.47294 * 60.00358 * 16 13 12 45 45 H 0.96990 * 119.99935 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.06095 * 179.74261 * 25 6 5 47 47 H 1.08004 * 119.94429 * 180.28193 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4337 1.2793 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3036 3.6788 0.0016 7 6 3.9710 4.9886 0.0028 8 6 3.5240 5.9745 -0.8034 9 6 2.5403 5.6784 -1.8445 10 8 2.2169 4.5261 -2.0662 11 7 1.9877 6.6818 -2.5546 12 6 0.9978 6.3856 -3.5933 13 6 0.5325 7.6910 -4.2415 14 6 -0.0982 8.5921 -3.1780 15 6 1.7319 8.4047 -4.8686 16 6 -0.5007 7.3816 -5.3266 17 6 -0.9585 8.6674 -5.9656 18 1 -0.5528 9.6109 -5.6314 19 6 -1.8946 8.6392 -6.9775 20 7 -2.3884 7.4903 -7.3848 21 14 -2.4616 10.2330 -7.7699 22 1 -1.2970 10.9253 -8.3777 23 1 -3.4645 9.9327 -8.8231 24 1 -3.0745 11.1080 -6.7384 25 6 1.9060 3.6029 0.0071 26 6 1.2859 2.3738 0.0008 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0192 0.3719 0.0014 31 1 5.1423 2.5567 0.0011 32 1 4.8190 5.1621 0.6486 33 1 3.8926 6.9821 -0.6798 34 1 2.2453 7.6001 -2.3780 35 1 1.4471 5.7433 -4.3507 36 1 0.1433 5.8775 -3.1464 37 1 0.6382 8.8124 -2.4052 38 1 -0.4293 9.5223 -3.6397 39 1 -0.9526 8.0836 -2.7313 40 1 2.1813 7.7629 -5.6263 41 1 1.4003 9.3345 -5.3308 42 1 2.4683 8.6251 -4.0959 43 1 -0.0509 6.7398 -6.0842 44 1 -1.3551 6.8729 -4.8803 45 1 -3.0466 7.4705 -8.0969 46 1 1.3151 4.5069 0.0117 47 1 0.2075 2.3141 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492919556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:56 Heat of formation + Delta-G solvation = -57.321443 kcal Electronic energy + Delta-G solvation = -26127.652050 eV Core-core repulsion = 22468.246686 eV Total energy + Delta-G solvation = -3659.405364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30208 -40.62779 -38.96830 -38.07014 -35.20284 -34.34288 -33.88332 -31.99903 -30.33210 -29.11116 -28.23922 -27.96359 -27.53857 -25.30825 -24.18883 -23.24035 -22.30338 -20.70523 -19.56342 -19.14638 -18.37629 -18.19571 -17.12845 -16.87444 -16.67486 -16.44611 -16.29060 -15.86548 -15.42185 -15.05691 -14.98358 -14.70847 -14.46523 -14.44162 -14.22941 -13.95934 -13.92892 -13.71386 -13.42409 -12.84565 -12.83815 -12.76508 -12.58644 -12.53377 -12.33435 -12.22501 -12.11089 -12.00667 -11.75623 -11.53616 -11.09454 -10.89686 -10.68592 -10.53331 -10.51858 -10.05861 -9.67342 -8.66809 -8.14929 -6.23158 -0.14297 0.52349 0.98040 1.41736 1.43935 1.51170 2.36640 2.37951 2.44020 2.47765 2.91999 3.19349 3.85497 3.87612 3.96594 3.97104 4.08449 4.10916 4.22923 4.27067 4.31434 4.41327 4.54743 4.58537 4.66645 4.69396 4.72547 4.79161 4.81120 4.96705 5.08261 5.10880 5.12024 5.14747 5.24864 5.41062 5.42493 5.49149 5.49244 5.52693 5.53699 5.60027 5.73814 5.79596 5.86091 5.88854 6.29390 6.43944 6.73078 6.92171 7.40867 7.44872 8.97538 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.002645 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.432137 B =10584.637451 C =11763.887475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.180 4.180 5 C -0.061 4.061 6 C -0.124 4.124 7 C -0.009 4.009 8 C -0.220 4.220 9 C 0.523 3.477 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.146 3.854 13 C -0.064 4.064 14 C -0.120 4.120 15 C -0.121 4.121 16 C 0.041 3.959 17 C -0.515 4.515 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.940 5.940 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.266 1.266 25 C -0.009 4.009 26 C -0.235 4.235 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.170 0.830 34 H 0.412 0.588 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.072 0.928 43 H -0.017 1.017 44 H -0.016 1.016 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.043 -5.409 20.023 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.198 4.198 5 C -0.079 4.079 6 C -0.125 4.125 7 C -0.028 4.028 8 C -0.240 4.240 9 C 0.314 3.686 10 O -0.456 6.456 11 N -0.358 5.358 12 C 0.021 3.979 13 C -0.065 4.065 14 C -0.178 4.178 15 C -0.179 4.179 16 C 0.003 3.997 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.581 5.581 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.191 1.191 25 C -0.027 4.027 26 C -0.253 4.253 27 H 0.141 0.859 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.195 0.805 33 H 0.188 0.812 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.001 0.999 44 H 0.002 0.998 45 H 0.068 0.932 46 H 0.124 0.876 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.749 -6.453 19.723 24.894 hybrid contribution -1.355 0.784 -1.204 1.975 sum 12.394 -5.669 18.520 22.994 Atomic orbital electron populations 1.23274 0.76915 1.05445 1.01697 1.85964 1.23065 1.27172 1.88580 1.19417 0.93089 0.84090 0.96038 1.20517 0.91001 0.99598 1.08732 1.21316 1.00749 0.90049 0.95759 1.19123 0.92913 0.94575 1.05866 1.22690 0.95900 0.89472 0.94724 1.23133 1.01117 1.02171 0.97573 1.19219 0.81675 0.84710 0.83019 1.90885 1.63573 1.21534 1.69601 1.45986 1.42360 1.10490 1.36980 1.21099 0.90513 0.96975 0.89284 1.20696 0.96373 0.93577 0.95810 1.21682 0.99665 0.99345 0.97070 1.21692 0.96043 1.00239 0.99877 1.18958 0.92535 0.95740 0.92448 1.21574 1.22244 0.93908 1.17551 0.90854 1.25968 0.96981 0.99317 0.97976 1.70117 1.30898 1.27137 1.29930 0.85590 0.78140 0.79735 0.78130 1.19084 1.21717 1.19058 1.20908 0.94210 0.96239 0.91378 1.21189 1.00273 0.92716 1.11163 0.85866 0.91707 0.93247 0.84074 0.82350 0.80527 0.81236 0.74962 0.94237 0.94029 0.90943 0.92600 0.94621 0.94713 0.92572 0.90928 0.99904 0.99811 0.93167 0.87578 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -8.41 10.48 -90.52 -0.95 -9.36 16 3 C 0.12 3.21 6.70 22.65 0.15 3.36 16 4 C -0.18 -4.26 9.97 22.32 0.22 -4.04 16 5 C -0.06 -1.27 9.79 22.55 0.22 -1.05 16 6 C -0.12 -2.88 4.53 -20.14 -0.09 -2.98 16 7 C -0.01 -0.14 9.80 23.82 0.23 0.09 16 8 C -0.22 -3.87 9.91 23.61 0.23 -3.63 16 9 C 0.52 14.45 6.79 86.33 0.59 15.04 16 10 O -0.57 -20.73 12.16 -4.40 -0.05 -20.79 16 11 N -0.71 -18.92 4.95 -467.49 -2.32 -21.24 16 12 C 0.15 5.24 4.56 86.38 0.39 5.63 16 13 C -0.06 -2.42 0.54 -52.18 -0.03 -2.44 16 14 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 15 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 16 C 0.04 2.09 4.04 29.85 0.12 2.21 16 17 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 18 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 19 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 20 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 21 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C -0.01 -0.25 6.59 22.55 0.15 -0.10 16 26 C -0.23 -6.53 9.01 22.32 0.20 -6.33 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.02 7.65 -2.39 -0.02 1.01 16 29 H 0.05 0.97 7.65 -2.39 -0.02 0.95 16 30 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.41 8.36 6.14 -92.71 -0.57 7.79 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 38 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 2.01 6.61 -2.39 -0.02 1.99 16 42 H 0.07 1.79 6.86 -2.39 -0.02 1.78 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 45 H 0.26 15.12 8.31 -92.72 -0.77 14.35 16 46 H 0.11 3.01 7.03 -2.91 -0.02 2.99 16 47 H 0.13 3.23 6.27 -2.91 -0.02 3.22 16 Total: -1.00 -74.54 377.89 4.71 -69.83 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.39 Total: 20.18 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 5.32 Total: -26.95 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.03 Total: -78.52 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.00 Total: -30.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.54 4.71 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492919556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.509 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds