Wall clock time and date at job start Tue Mar 31 2020 11:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.52999 * 109.47322 * 239.99710 * 2 1 3 5 5 C 1.50705 * 109.47063 * 60.00341 * 4 2 1 6 6 H 1.07998 * 119.99995 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99584 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47021 * 89.99994 * 9 7 5 11 11 H 1.48504 * 109.47351 * 209.99966 * 9 7 5 12 12 H 1.48499 * 109.47502 * 329.99957 * 9 7 5 13 13 C 1.52999 * 109.47333 * 119.99926 * 2 1 3 14 14 N 1.46508 * 109.46936 * 300.00322 * 13 2 1 15 15 C 1.34770 * 119.99909 * 179.97438 * 14 13 2 16 16 O 1.21697 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.46428 * 119.99861 * 179.97438 * 15 14 13 18 18 C 1.34814 * 119.99786 * 187.20117 * 17 15 14 19 19 C 1.47204 * 120.00132 * 11.15631 * 18 17 15 20 20 C 1.39854 * 120.16667 * 42.73797 * 19 18 17 21 21 C 1.37870 * 119.82264 * 179.97438 * 20 19 18 22 22 C 1.38423 * 120.17269 * 359.97438 * 21 20 19 23 23 C 1.38373 * 120.34628 * 359.74991 * 22 21 20 24 24 C 1.50701 * 119.92040 * 180.25723 * 23 22 21 25 25 O 1.42905 * 109.47029 * 270.25080 * 24 23 22 26 26 C 1.37918 * 120.17058 * 0.50892 * 23 22 21 27 27 H 1.08993 * 109.47489 * 300.00140 * 1 2 3 28 28 H 1.09005 * 109.47013 * 60.00086 * 1 2 3 29 29 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46972 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47129 * 299.99623 * 3 2 1 32 32 H 1.08993 * 109.46907 * 60.00137 * 3 2 1 33 33 H 1.09008 * 109.47485 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47581 * 300.00315 * 4 2 1 35 35 H 0.97001 * 119.99536 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47745 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.47344 * 59.99735 * 13 2 1 38 38 H 0.96995 * 119.99838 * 359.97438 * 14 13 2 39 39 H 1.07994 * 120.00352 * 7.19858 * 17 15 14 40 40 H 1.08001 * 119.99348 * 191.16176 * 18 17 15 41 41 H 1.08001 * 120.09011 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.91514 * 180.02562 * 21 20 19 43 43 H 1.08002 * 119.82744 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46908 * 30.24821 * 24 23 22 45 45 H 1.08999 * 109.47486 * 150.24900 * 24 23 22 46 46 H 0.96693 * 114.00096 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.08742 * 179.77189 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8704 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3979 -5.2572 10 1 2.2253 1.4395 -5.6619 11 1 1.0819 -0.5815 -6.3611 12 1 -0.0608 1.0355 -4.9611 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5757 -1.4812 3.7812 17 6 1.3891 0.1993 4.8650 18 6 1.8296 -0.1710 6.0842 19 6 2.9724 -1.0909 6.2058 20 6 4.0949 -0.9291 5.3874 21 6 5.1615 -1.7945 5.5077 22 6 5.1235 -2.8208 6.4357 23 6 4.0188 -2.9839 7.2529 24 6 3.9900 -4.1011 8.2639 25 8 3.4286 -5.2710 7.6652 26 6 2.9417 -2.1298 7.1410 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 2.8609 -1.8830 -4.7335 36 1 3.1300 -0.7217 1.2491 37 1 1.6767 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.6766 1.0053 4.7702 40 1 1.3439 0.2072 6.9716 41 1 4.1262 -0.1286 4.6632 42 1 6.0293 -1.6707 4.8767 43 1 5.9623 -3.4952 6.5254 44 1 5.0053 -4.3153 8.5976 45 1 3.3822 -3.8027 9.1180 46 1 3.3793 -6.0320 8.2597 47 1 2.0787 -2.2605 7.7769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493381454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:44 Heat of formation + Delta-G solvation = -51.507722 kcal Electronic energy + Delta-G solvation = -25964.317648 eV Core-core repulsion = 22305.164386 eV Total energy + Delta-G solvation = -3659.153263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10231 -38.98190 -37.25913 -36.64558 -33.94494 -33.51973 -32.09820 -31.50312 -29.90730 -27.15743 -26.50952 -26.40388 -26.04106 -23.91727 -22.65243 -22.03312 -20.89578 -19.38795 -18.03206 -17.65851 -17.25524 -16.40940 -16.32672 -15.71584 -15.43756 -14.94140 -14.79248 -14.56375 -14.25385 -13.87022 -13.68649 -13.43682 -13.32780 -13.09972 -12.77846 -12.72957 -12.54605 -12.25990 -12.05946 -11.97653 -11.20291 -11.14433 -11.01374 -11.00205 -10.85013 -10.63591 -10.39716 -10.30677 -10.25250 -10.06104 -9.87120 -9.70101 -9.17306 -8.92226 -8.88468 -8.50808 -8.35554 -8.07768 -5.99514 -4.00850 0.69246 1.44523 1.85938 3.30965 3.37965 3.39590 3.47168 3.57251 3.72522 4.36400 4.45469 4.57287 4.78470 4.83546 4.92213 5.03976 5.13239 5.19406 5.26159 5.35928 5.39810 5.51730 5.61242 5.63768 5.75500 5.91971 5.92834 6.06987 6.13721 6.17672 6.24117 6.32935 6.40430 6.49531 6.56069 6.59031 6.63137 6.63894 6.79427 7.01737 7.06821 7.07825 7.13802 7.39214 7.64662 7.76989 7.81674 7.99300 8.40684 8.51172 9.03988 9.62208 11.11977 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002428 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.117653 B =11527.747372 C =12130.455353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.129 3.871 14 N -0.715 5.715 15 C 0.528 3.472 16 O -0.530 6.530 17 C -0.207 4.207 18 C -0.031 4.031 19 C -0.075 4.075 20 C -0.022 4.022 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.115 4.115 24 C 0.121 3.879 25 O -0.566 6.566 26 C -0.079 4.079 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.376 0.624 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 2.014 25.685 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.006 3.994 14 N -0.366 5.366 15 C 0.316 3.684 16 O -0.410 6.410 17 C -0.228 4.228 18 C -0.050 4.050 19 C -0.075 4.075 20 C -0.041 4.041 21 C -0.154 4.154 22 C -0.104 4.104 23 C -0.115 4.115 24 C 0.044 3.956 25 O -0.371 6.371 26 C -0.097 4.097 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.233 0.767 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.223 0.777 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.019 1.587 25.068 25.139 hybrid contribution -0.646 0.415 -0.685 1.029 sum 0.373 2.002 24.383 24.468 Atomic orbital electron populations 1.21761 0.95312 1.01165 1.00206 1.20896 0.95441 0.95812 0.95108 1.21761 1.00504 0.95933 1.00216 1.19091 0.96329 0.95239 0.89512 1.21180 1.31168 1.12040 0.90521 0.92274 1.25020 0.95354 0.95070 0.99099 1.69969 1.36983 1.22989 1.23436 0.86645 0.79170 0.79401 0.83069 1.20781 1.21338 1.19956 1.21605 0.98806 0.96042 0.82943 1.46207 1.52897 1.31513 1.05966 1.18473 0.80955 0.85083 0.83913 1.90900 1.37459 1.26255 1.86343 1.23084 1.04520 1.02188 0.92960 1.22318 0.92704 0.93052 0.96955 1.18812 0.94351 0.96906 0.97428 1.21110 0.91601 0.97930 0.93434 1.20950 0.99135 0.96151 0.99152 1.21028 0.97635 0.97000 0.94761 1.19339 0.95389 0.96976 0.99807 1.20934 0.97143 0.84398 0.93106 1.86650 1.85490 1.22146 1.42833 1.20973 0.96955 0.94313 0.97446 0.95241 0.91451 0.93387 0.93403 0.91460 0.95232 0.96381 0.96360 0.93038 0.91875 0.91856 0.76746 0.85074 0.84855 0.86713 0.86079 0.86479 0.93039 0.93105 0.77694 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.13 2.30 4.56 -4.04 -0.02 2.29 16 14 N -0.72 -10.38 4.95 -61.70 -0.31 -10.69 16 15 C 0.53 7.86 6.74 -12.97 -0.09 7.78 16 16 O -0.53 -9.78 12.13 5.19 0.06 -9.72 16 17 C -0.21 -2.26 9.91 -37.50 -0.37 -2.63 16 18 C -0.03 -0.32 9.81 -37.16 -0.36 -0.68 16 19 C -0.07 -0.96 4.57 -105.06 -0.48 -1.44 16 20 C -0.02 -0.31 6.58 -39.11 -0.26 -0.57 16 21 C -0.14 -1.80 10.03 -39.65 -0.40 -2.20 16 22 C -0.09 -1.07 9.69 -39.46 -0.38 -1.45 16 23 C -0.11 -1.39 5.50 -104.69 -0.58 -1.97 16 24 C 0.12 1.11 7.16 36.01 0.26 1.37 16 25 O -0.57 -5.99 13.64 -35.23 -0.48 -6.47 16 26 C -0.08 -0.95 9.44 -39.11 -0.37 -1.32 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 33 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.40 4.85 6.14 -40.82 -0.25 4.59 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.11 1.61 6.93 -52.49 -0.36 1.24 16 42 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 45 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 46 H 0.38 1.92 9.12 45.56 0.42 2.34 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -34.01 381.11 -8.79 -42.80 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.52 Total: 5.73 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -3.01 Total: -17.80 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.43 Total: -36.54 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.42 Total: -16.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.01 -8.79 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493381454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.710 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds