Wall clock time and date at job start Tue Mar 31 2020 11:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.52999 * 109.47322 * 239.99710 * 2 1 3 5 5 C 1.50705 * 109.47063 * 60.00341 * 4 2 1 6 6 H 1.07998 * 119.99995 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99584 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47021 * 89.99994 * 9 7 5 11 11 H 1.48504 * 109.47351 * 209.99966 * 9 7 5 12 12 H 1.48499 * 109.47502 * 329.99957 * 9 7 5 13 13 C 1.52999 * 109.47333 * 119.99926 * 2 1 3 14 14 N 1.46508 * 109.46936 * 300.00322 * 13 2 1 15 15 C 1.34770 * 119.99909 * 179.97438 * 14 13 2 16 16 O 1.21697 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.46428 * 119.99861 * 179.97438 * 15 14 13 18 18 C 1.34814 * 119.99786 * 187.20117 * 17 15 14 19 19 C 1.47204 * 120.00132 * 11.15631 * 18 17 15 20 20 C 1.39854 * 120.16667 * 42.73797 * 19 18 17 21 21 C 1.37870 * 119.82264 * 179.97438 * 20 19 18 22 22 C 1.38423 * 120.17269 * 359.97438 * 21 20 19 23 23 C 1.38373 * 120.34628 * 359.74991 * 22 21 20 24 24 C 1.50701 * 119.92040 * 180.25723 * 23 22 21 25 25 O 1.42905 * 109.47029 * 270.25080 * 24 23 22 26 26 C 1.37918 * 120.17058 * 0.50892 * 23 22 21 27 27 H 1.08993 * 109.47489 * 300.00140 * 1 2 3 28 28 H 1.09005 * 109.47013 * 60.00086 * 1 2 3 29 29 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46972 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47129 * 299.99623 * 3 2 1 32 32 H 1.08993 * 109.46907 * 60.00137 * 3 2 1 33 33 H 1.09008 * 109.47485 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47581 * 300.00315 * 4 2 1 35 35 H 0.97001 * 119.99536 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47745 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.47344 * 59.99735 * 13 2 1 38 38 H 0.96995 * 119.99838 * 359.97438 * 14 13 2 39 39 H 1.07994 * 120.00352 * 7.19858 * 17 15 14 40 40 H 1.08001 * 119.99348 * 191.16176 * 18 17 15 41 41 H 1.08001 * 120.09011 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.91514 * 180.02562 * 21 20 19 43 43 H 1.08002 * 119.82744 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46908 * 30.24821 * 24 23 22 45 45 H 1.08999 * 109.47486 * 150.24900 * 24 23 22 46 46 H 0.96693 * 114.00096 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.08742 * 179.77189 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8704 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3979 -5.2572 10 1 2.2253 1.4395 -5.6619 11 1 1.0819 -0.5815 -6.3611 12 1 -0.0608 1.0355 -4.9611 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5757 -1.4812 3.7812 17 6 1.3891 0.1993 4.8650 18 6 1.8296 -0.1710 6.0842 19 6 2.9724 -1.0909 6.2058 20 6 4.0949 -0.9291 5.3874 21 6 5.1615 -1.7945 5.5077 22 6 5.1235 -2.8208 6.4357 23 6 4.0188 -2.9839 7.2529 24 6 3.9900 -4.1011 8.2639 25 8 3.4286 -5.2710 7.6652 26 6 2.9417 -2.1298 7.1410 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 2.8609 -1.8830 -4.7335 36 1 3.1300 -0.7217 1.2491 37 1 1.6767 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.6766 1.0053 4.7702 40 1 1.3439 0.2072 6.9716 41 1 4.1262 -0.1286 4.6632 42 1 6.0293 -1.6707 4.8767 43 1 5.9623 -3.4952 6.5254 44 1 5.0053 -4.3153 8.5976 45 1 3.3822 -3.8027 9.1180 46 1 3.3793 -6.0320 8.2597 47 1 2.0787 -2.2605 7.7769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493381454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:43 Heat of formation + Delta-G solvation = -74.557701 kcal Electronic energy + Delta-G solvation = -25965.317170 eV Core-core repulsion = 22305.164386 eV Total energy + Delta-G solvation = -3660.152785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20062 -40.03103 -38.67130 -37.49807 -35.26241 -34.74698 -33.92379 -32.40559 -30.86187 -29.10975 -27.96692 -27.79638 -26.84069 -25.39201 -24.10285 -23.01228 -21.99756 -20.55329 -19.44674 -18.38710 -18.37212 -18.30338 -17.40348 -16.76794 -16.59569 -16.36506 -16.18720 -15.84411 -15.31526 -15.04033 -14.78338 -14.66582 -14.48183 -14.45882 -14.11691 -13.94910 -13.76618 -13.67813 -13.40148 -13.01020 -12.85472 -12.72631 -12.58427 -12.34653 -12.23454 -12.09648 -11.98363 -11.84802 -11.54248 -11.16706 -10.97101 -10.92771 -10.85411 -10.68169 -10.52597 -10.05608 -9.59531 -9.03833 -8.14940 -6.23135 -0.20824 0.50599 0.93952 1.41741 1.42473 1.52874 2.34430 2.40938 2.46516 2.83159 3.19401 3.65012 3.77564 3.92403 3.97607 4.07317 4.07959 4.10188 4.18928 4.22391 4.36809 4.49751 4.50607 4.57727 4.68680 4.71827 4.72231 4.78370 4.96169 5.05661 5.07602 5.11155 5.11673 5.21057 5.31105 5.41063 5.48673 5.48886 5.53186 5.55679 5.58628 5.65323 5.71791 5.79296 5.88875 6.10484 6.29187 6.70141 6.92304 6.93968 7.37954 7.44807 8.97775 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002428 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.117653 B =11527.747372 C =12130.455353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.145 3.855 14 N -0.705 5.705 15 C 0.521 3.479 16 O -0.573 6.573 17 C -0.211 4.211 18 C -0.019 4.019 19 C -0.090 4.090 20 C -0.043 4.043 21 C -0.156 4.156 22 C -0.101 4.101 23 C -0.127 4.127 24 C 0.121 3.879 25 O -0.595 6.595 26 C -0.088 4.088 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.072 0.928 33 H -0.016 1.016 34 H -0.017 1.017 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.413 0.587 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.398 0.602 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 4.107 27.953 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.021 3.979 14 N -0.357 5.357 15 C 0.312 3.688 16 O -0.455 6.455 17 C -0.231 4.231 18 C -0.038 4.038 19 C -0.090 4.090 20 C -0.061 4.061 21 C -0.174 4.174 22 C -0.119 4.119 23 C -0.127 4.127 24 C 0.044 3.956 25 O -0.404 6.404 26 C -0.106 4.106 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.251 0.749 39 H 0.191 0.809 40 H 0.196 0.804 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.248 0.752 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.244 3.710 27.366 27.645 hybrid contribution 0.122 -0.331 -1.310 1.357 sum -1.122 3.380 26.056 26.299 Atomic orbital electron populations 1.21693 0.93578 1.00835 1.01759 1.20689 0.96687 0.96320 0.92683 1.21691 0.99812 0.94546 1.01773 1.18980 0.94163 0.94123 0.92586 1.21590 1.30406 1.12060 0.91003 0.90808 1.25988 0.95697 0.95861 1.02850 1.70135 1.38869 1.25016 1.24101 0.85512 0.79221 0.78080 0.78636 1.20087 1.21608 1.18225 1.21113 0.97458 0.95117 0.84235 1.45970 1.53102 1.31751 1.04845 1.19258 0.79985 0.84725 0.84870 1.90899 1.39273 1.28363 1.86935 1.23174 1.05822 1.03316 0.90834 1.22752 0.91271 0.91410 0.98416 1.19196 0.94886 0.97767 0.97124 1.21153 0.92741 0.98209 0.94046 1.21158 0.99516 0.96873 0.99898 1.21285 0.98696 0.97045 0.94873 1.19822 0.95036 0.97837 1.00003 1.21032 0.98743 0.83224 0.92578 1.86574 1.85737 1.23469 1.44660 1.21333 0.97746 0.93956 0.97561 0.90930 0.92522 0.94727 0.94591 0.92513 0.90929 0.99783 0.99888 0.93184 0.93983 0.94293 0.74902 0.80922 0.80427 0.87880 0.85946 0.85116 0.91280 0.90675 0.75162 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.77 7.65 25.60 0.20 -27.57 16 6 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 9 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 C 0.15 5.34 4.56 86.38 0.39 5.74 16 14 N -0.70 -19.47 4.95 -467.33 -2.32 -21.78 16 15 C 0.52 14.98 6.74 86.38 0.58 15.56 16 16 O -0.57 -21.59 12.13 -4.34 -0.05 -21.65 16 17 C -0.21 -3.92 9.91 23.62 0.23 -3.69 16 18 C -0.02 -0.33 9.81 23.84 0.23 -0.10 16 19 C -0.09 -2.20 4.57 -20.15 -0.09 -2.29 16 20 C -0.04 -1.23 6.58 22.57 0.15 -1.08 16 21 C -0.16 -4.37 10.03 22.23 0.22 -4.14 16 22 C -0.10 -2.55 9.69 22.35 0.22 -2.33 16 23 C -0.13 -2.95 5.50 -19.91 -0.11 -3.06 16 24 C 0.12 1.97 7.16 71.24 0.51 2.49 16 25 O -0.60 -11.71 13.64 -148.98 -2.03 -13.75 16 26 C -0.09 -2.00 9.44 22.58 0.21 -1.78 16 27 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 28 H 0.06 2.05 6.62 -2.38 -0.02 2.03 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 32 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 33 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 8.61 6.14 -92.71 -0.57 8.05 16 39 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.10 3.04 6.93 -2.91 -0.02 3.02 16 42 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 45 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 46 H 0.40 3.39 9.12 -74.06 -0.68 2.72 16 47 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -78.67 381.11 2.11 -76.56 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.27 Total: 21.96 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 4.46 Total: -29.54 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.03 Total: -79.55 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -2.09 Total: -35.39 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -78.67 2.11 -76.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493381454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.006 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds