Wall clock time and date at job start Tue Mar 31 2020 11:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46670 * 2 1 4 4 C 1.53005 * 109.47167 * 240.00761 * 2 1 3 5 5 C 1.50697 * 109.47243 * 59.99075 * 4 2 1 6 6 H 1.08008 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99999 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46977 * 60.00676 * 9 7 5 11 11 H 1.48503 * 109.46891 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47427 * 300.00175 * 9 7 5 13 13 C 1.52997 * 109.47768 * 120.00207 * 2 1 3 14 14 N 1.46506 * 109.47089 * 300.00428 * 13 2 1 15 15 C 1.34770 * 120.00142 * 179.97438 * 14 13 2 16 16 O 1.21622 * 119.99726 * 359.97438 * 15 14 13 17 17 C 1.47103 * 120.00212 * 180.27309 * 15 14 13 18 18 C 1.32996 * 120.00157 * 186.74444 * 17 15 14 19 19 C 1.50700 * 119.99779 * 14.12945 * 18 17 15 20 20 O 1.42897 * 109.47375 * 135.13245 * 19 18 17 21 21 C 1.35903 * 116.99954 * 179.97438 * 20 19 18 22 22 C 1.38729 * 120.05737 * 359.72621 * 21 20 19 23 23 C 1.38144 * 119.94348 * 179.73820 * 22 21 20 24 24 C 1.38270 * 120.05531 * 0.51611 * 23 22 21 25 25 C 1.38266 * 120.10919 * 359.75772 * 24 23 22 26 26 C 1.38137 * 120.06032 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46759 * 299.99175 * 1 2 3 28 28 H 1.08995 * 109.47558 * 59.99537 * 1 2 3 29 29 H 1.09004 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47363 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47508 * 300.00493 * 3 2 1 32 32 H 1.09001 * 109.46927 * 60.00398 * 3 2 1 33 33 H 1.08997 * 109.46879 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46530 * 299.99338 * 4 2 1 35 35 H 0.96998 * 120.00419 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47374 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.46889 * 59.99459 * 13 2 1 38 38 H 0.97003 * 119.99772 * 359.97438 * 14 13 2 39 39 H 1.07998 * 119.99803 * 6.74865 * 17 15 14 40 40 H 1.07992 * 120.00252 * 194.11794 * 18 17 15 41 41 H 1.09004 * 109.46623 * 255.13523 * 19 18 17 42 42 H 1.09006 * 109.47548 * 15.12858 * 19 18 17 43 43 H 1.07994 * 120.02834 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.97778 * 180.27436 * 23 22 21 45 45 H 1.07994 * 119.94473 * 179.73966 * 24 23 22 46 46 H 1.08000 * 119.97215 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.03547 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2494 5 6 1.5376 -0.0107 -2.4797 6 1 0.9168 0.8676 -2.3805 7 6 1.8711 -0.4813 -3.7321 8 7 2.6273 -1.5504 -3.8528 9 14 1.2488 0.3997 -5.2571 10 1 1.7438 1.7998 -5.2565 11 1 1.7437 -0.3003 -6.4697 12 1 -0.2362 0.3996 -5.2576 13 6 2.0402 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6694 16 8 2.5757 -1.4808 3.7809 17 6 1.3818 0.1983 4.8706 18 6 1.8091 -0.1725 6.0742 19 6 3.0180 -1.0631 6.2032 20 8 3.8729 -0.5598 7.2316 21 6 5.0159 -1.2526 7.4778 22 6 5.3058 -2.3965 6.7484 23 6 6.4709 -3.0959 6.9969 24 6 7.3427 -2.6626 7.9788 25 6 7.0532 -1.5260 8.7110 26 6 5.8922 -0.8200 8.4626 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7207 -1.2496 34 1 1.6768 -1.7488 -1.2494 35 1 2.8616 -1.8818 -4.7338 36 1 3.1302 -0.7216 1.2488 37 1 1.6768 -1.7489 1.2491 38 1 0.9943 0.7581 2.3565 39 1 0.6711 1.0058 4.7751 40 1 1.2900 0.1646 6.9591 41 1 2.6991 -2.0738 6.4580 42 1 3.5591 -1.0806 5.2570 43 1 4.6231 -2.7378 5.9844 44 1 6.6993 -3.9840 6.4264 45 1 8.2510 -3.2131 8.1744 46 1 7.7355 -1.1898 9.4777 47 1 5.6663 0.0676 9.0350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493553419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:18 Heat of formation + Delta-G solvation = -40.959171 kcal Electronic energy + Delta-G solvation = -25464.932742 eV Core-core repulsion = 21806.236899 eV Total energy + Delta-G solvation = -3658.695843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37597 -39.73432 -37.69808 -37.16442 -33.93081 -33.65723 -32.13550 -31.18073 -30.04198 -27.72681 -27.00874 -26.55547 -25.96695 -23.43379 -22.77356 -22.19685 -21.50932 -19.85628 -18.41882 -18.05802 -17.25351 -16.41043 -16.15020 -16.13227 -15.88344 -15.20123 -15.03163 -14.61705 -14.50793 -14.26388 -13.72007 -13.60139 -13.47997 -13.20722 -13.02156 -12.78667 -12.69675 -12.24029 -12.19723 -12.08124 -11.74790 -11.34534 -11.15232 -11.06333 -11.03178 -10.89521 -10.66461 -10.44822 -10.29972 -9.92117 -9.76528 -9.60204 -9.19451 -9.17672 -8.96882 -8.76464 -8.38312 -8.33471 -6.02345 -4.03913 1.02694 1.16773 1.27910 2.99063 3.30213 3.35641 3.35900 3.37296 3.41097 3.62698 4.42925 4.54486 4.67932 4.75525 4.79042 4.98694 5.05607 5.15603 5.21005 5.28006 5.32978 5.41871 5.49466 5.53943 5.57357 5.70504 5.82495 5.91888 6.06333 6.12049 6.15376 6.17541 6.24562 6.27204 6.34064 6.36109 6.50498 6.58862 6.60958 6.70493 7.01619 7.03332 7.08151 7.26475 7.60059 7.65453 7.72584 7.95828 8.28689 8.37965 9.00534 9.59277 11.09048 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002166 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.409489 B =12924.712325 C =13844.937862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.712 5.712 15 C 0.532 3.468 16 O -0.546 6.546 17 C -0.195 4.195 18 C -0.067 4.067 19 C 0.062 3.938 20 O -0.321 6.321 21 C 0.135 3.865 22 C -0.205 4.205 23 C -0.079 4.079 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.157 4.157 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 2.473 24.032 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.428 6.428 17 C -0.216 4.216 18 C -0.087 4.087 19 C -0.011 4.011 20 O -0.235 6.235 21 C 0.090 3.910 22 C -0.224 4.224 23 C -0.098 4.098 24 C -0.181 4.181 25 C -0.103 4.103 26 C -0.176 4.176 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.236 0.764 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.233 1.832 24.005 24.179 hybrid contribution -0.727 0.641 -1.165 1.515 sum 1.507 2.473 22.840 23.023 Atomic orbital electron populations 1.21767 0.95238 1.01188 1.00274 1.20912 0.95495 0.95875 0.95048 1.21770 1.00583 0.95869 1.00281 1.19087 0.96357 0.95213 0.89458 1.21136 1.31307 1.12108 0.90514 0.92312 1.25015 0.95299 0.95089 0.99107 1.69946 1.36824 1.22996 1.23591 0.86700 0.79131 0.79767 0.82634 1.20318 1.21392 1.20328 1.21669 0.98986 0.96087 0.82877 1.46148 1.52570 1.31561 1.05875 1.18654 0.80509 0.84674 0.84050 1.90669 1.38548 1.26957 1.86598 1.22781 1.05027 1.01399 0.92416 1.23281 0.93659 0.94252 0.97534 1.22516 0.90144 0.96628 0.91839 1.85949 1.30400 1.51669 1.55469 1.18994 0.86421 0.91029 0.94595 1.21450 1.00470 0.97268 1.03209 1.21008 0.93192 0.98963 0.96595 1.21065 1.00577 0.98249 0.98245 1.20936 0.95783 0.94712 0.98828 1.20433 0.94939 1.02535 0.99668 0.95238 0.91376 0.93348 0.93343 0.91373 0.95229 0.96343 0.96346 0.92952 0.91677 0.91648 0.76412 0.84456 0.84863 0.90620 0.86760 0.84804 0.85741 0.86044 0.85547 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.47 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.20 13.28 55.43 0.74 -25.47 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.13 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.71 -9.71 4.95 -61.49 -0.30 -10.01 16 15 C 0.53 7.36 7.54 -12.67 -0.10 7.26 16 16 O -0.55 -9.18 13.33 5.26 0.07 -9.11 16 17 C -0.20 -1.96 10.01 -37.80 -0.38 -2.34 16 18 C -0.07 -0.66 9.94 -36.13 -0.36 -1.02 16 19 C 0.06 0.74 4.12 36.01 0.15 0.88 16 20 O -0.32 -3.98 10.12 -19.44 -0.20 -4.18 16 21 C 0.14 1.64 6.69 -39.21 -0.26 1.38 16 22 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 23 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 24 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 25 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.16 -1.64 9.99 -39.43 -0.39 -2.03 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.40 4.55 6.15 -40.82 -0.25 4.30 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.08 0.86 7.65 -51.93 -0.40 0.46 16 42 H 0.12 1.62 4.75 -51.93 -0.25 1.37 16 43 H 0.13 1.60 6.30 -52.49 -0.33 1.27 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -30.88 381.33 -8.97 -39.85 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.13 Total: 4.62 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.87 Total: -17.43 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.43 Total: -35.48 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.13 Total: -13.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.88 -8.97 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.113 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds