Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46670 * 2 1 4 4 C 1.53005 * 109.47167 * 240.00761 * 2 1 3 5 5 C 1.50697 * 109.47243 * 59.99075 * 4 2 1 6 6 H 1.08008 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99999 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46977 * 60.00676 * 9 7 5 11 11 H 1.48503 * 109.46891 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47427 * 300.00175 * 9 7 5 13 13 C 1.52997 * 109.47768 * 120.00207 * 2 1 3 14 14 N 1.46506 * 109.47089 * 300.00428 * 13 2 1 15 15 C 1.34770 * 120.00142 * 179.97438 * 14 13 2 16 16 O 1.21622 * 119.99726 * 359.97438 * 15 14 13 17 17 C 1.47103 * 120.00212 * 180.27309 * 15 14 13 18 18 C 1.32996 * 120.00157 * 186.74444 * 17 15 14 19 19 C 1.50700 * 119.99779 * 14.12945 * 18 17 15 20 20 O 1.42897 * 109.47375 * 135.13245 * 19 18 17 21 21 C 1.35903 * 116.99954 * 179.97438 * 20 19 18 22 22 C 1.38729 * 120.05737 * 359.72621 * 21 20 19 23 23 C 1.38144 * 119.94348 * 179.73820 * 22 21 20 24 24 C 1.38270 * 120.05531 * 0.51611 * 23 22 21 25 25 C 1.38266 * 120.10919 * 359.75772 * 24 23 22 26 26 C 1.38137 * 120.06032 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46759 * 299.99175 * 1 2 3 28 28 H 1.08995 * 109.47558 * 59.99537 * 1 2 3 29 29 H 1.09004 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47363 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47508 * 300.00493 * 3 2 1 32 32 H 1.09001 * 109.46927 * 60.00398 * 3 2 1 33 33 H 1.08997 * 109.46879 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46530 * 299.99338 * 4 2 1 35 35 H 0.96998 * 120.00419 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47374 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.46889 * 59.99459 * 13 2 1 38 38 H 0.97003 * 119.99772 * 359.97438 * 14 13 2 39 39 H 1.07998 * 119.99803 * 6.74865 * 17 15 14 40 40 H 1.07992 * 120.00252 * 194.11794 * 18 17 15 41 41 H 1.09004 * 109.46623 * 255.13523 * 19 18 17 42 42 H 1.09006 * 109.47548 * 15.12858 * 19 18 17 43 43 H 1.07994 * 120.02834 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.97778 * 180.27436 * 23 22 21 45 45 H 1.07994 * 119.94473 * 179.73966 * 24 23 22 46 46 H 1.08000 * 119.97215 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.03547 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2494 5 6 1.5376 -0.0107 -2.4797 6 1 0.9168 0.8676 -2.3805 7 6 1.8711 -0.4813 -3.7321 8 7 2.6273 -1.5504 -3.8528 9 14 1.2488 0.3997 -5.2571 10 1 1.7438 1.7998 -5.2565 11 1 1.7437 -0.3003 -6.4697 12 1 -0.2362 0.3996 -5.2576 13 6 2.0402 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6694 16 8 2.5757 -1.4808 3.7809 17 6 1.3818 0.1983 4.8706 18 6 1.8091 -0.1725 6.0742 19 6 3.0180 -1.0631 6.2032 20 8 3.8729 -0.5598 7.2316 21 6 5.0159 -1.2526 7.4778 22 6 5.3058 -2.3965 6.7484 23 6 6.4709 -3.0959 6.9969 24 6 7.3427 -2.6626 7.9788 25 6 7.0532 -1.5260 8.7110 26 6 5.8922 -0.8200 8.4626 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7207 -1.2496 34 1 1.6768 -1.7488 -1.2494 35 1 2.8616 -1.8818 -4.7338 36 1 3.1302 -0.7216 1.2488 37 1 1.6768 -1.7489 1.2491 38 1 0.9943 0.7581 2.3565 39 1 0.6711 1.0058 4.7751 40 1 1.2900 0.1646 6.9591 41 1 2.6991 -2.0738 6.4580 42 1 3.5591 -1.0806 5.2570 43 1 4.6231 -2.7378 5.9844 44 1 6.6993 -3.9840 6.4264 45 1 8.2510 -3.2131 8.1744 46 1 7.7355 -1.1898 9.4777 47 1 5.6663 0.0676 9.0350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493553419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = -58.503003 kcal Electronic energy + Delta-G solvation = -25465.693500 eV Core-core repulsion = 21806.236899 eV Total energy + Delta-G solvation = -3659.456601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32711 -40.78203 -38.87967 -38.28652 -35.32402 -34.70966 -33.95323 -31.96522 -30.85657 -29.27425 -28.46735 -27.96314 -27.18918 -25.08576 -23.72226 -23.13653 -22.56225 -20.96008 -19.60195 -19.17328 -18.37039 -18.24006 -17.17805 -17.03468 -16.84655 -16.47632 -16.27638 -16.25540 -15.33578 -15.25226 -15.13262 -14.71930 -14.61410 -14.36165 -14.22909 -13.95070 -13.91647 -13.83811 -13.46146 -13.09384 -12.84802 -12.75319 -12.60045 -12.48802 -12.33056 -12.23017 -12.17392 -12.01261 -11.86002 -11.53852 -11.07016 -10.89238 -10.71574 -10.51339 -10.46596 -9.98746 -9.94647 -9.17823 -8.14466 -6.22454 0.18278 0.37508 0.47268 1.42270 1.44351 1.51536 2.02889 2.26421 2.45000 2.46769 2.83240 3.19833 3.73613 3.82994 3.92046 3.98360 4.03332 4.07516 4.18033 4.21903 4.27339 4.36618 4.46940 4.51358 4.65473 4.70533 4.71480 4.74343 4.77547 4.96354 5.07133 5.09968 5.12328 5.12350 5.33366 5.35895 5.41813 5.46542 5.48348 5.49910 5.53450 5.56669 5.58777 5.79683 5.85203 5.89270 6.29558 6.39075 6.59089 6.92652 7.23084 7.45318 8.97841 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002166 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.409489 B =12924.712325 C =13844.937862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.141 3.859 14 N -0.701 5.701 15 C 0.524 3.476 16 O -0.584 6.584 17 C -0.191 4.191 18 C -0.060 4.060 19 C 0.062 3.938 20 O -0.326 6.326 21 C 0.109 3.891 22 C -0.226 4.226 23 C -0.092 4.092 24 C -0.163 4.163 25 C -0.082 4.082 26 C -0.165 4.165 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.072 0.928 33 H -0.016 1.016 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.416 0.584 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 4.974 26.148 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.017 3.983 14 N -0.353 5.353 15 C 0.315 3.685 16 O -0.468 6.468 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.012 4.012 20 O -0.240 6.240 21 C 0.064 3.936 22 C -0.245 4.245 23 C -0.110 4.110 24 C -0.181 4.181 25 C -0.099 4.099 26 C -0.183 4.183 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.003 0.997 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.254 0.746 39 H 0.198 0.802 40 H 0.187 0.813 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.137 0.863 44 H 0.154 0.846 45 H 0.166 0.834 46 H 0.177 0.823 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.116 4.369 26.140 26.526 hybrid contribution -0.274 -0.221 -1.735 1.771 sum 0.843 4.148 24.404 24.769 Atomic orbital electron populations 1.21701 0.93431 1.00991 1.01797 1.20707 0.96810 0.96252 0.92741 1.21707 0.99816 0.94678 1.01784 1.18976 0.94193 0.94208 0.92454 1.21564 1.30465 1.12114 0.91045 0.90869 1.25970 0.95689 0.95897 1.02799 1.70112 1.38742 1.24995 1.24152 0.85583 0.78977 0.78734 0.78252 1.19134 1.21784 1.19083 1.21198 0.97655 0.95432 0.84008 1.45906 1.52787 1.31822 1.04763 1.19411 0.79695 0.84415 0.84980 1.90683 1.40093 1.28850 1.87145 1.22883 1.05915 1.02190 0.90139 1.23538 0.92537 0.93053 0.98872 1.22399 0.90823 0.97378 0.90595 1.85922 1.30703 1.51943 1.55477 1.19317 0.87006 0.91547 0.95722 1.21484 1.01266 0.98126 1.03596 1.21271 0.92995 0.99414 0.97344 1.21439 1.01010 0.98356 0.97282 1.21361 0.95521 0.94065 0.98975 1.20752 0.95094 1.03214 0.99267 0.90867 0.92581 0.94479 0.94640 0.92540 0.90931 0.99744 0.99630 0.93185 0.93790 0.93522 0.74577 0.80175 0.81349 0.91090 0.89526 0.86291 0.84593 0.83392 0.82317 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.37 7.65 25.60 0.20 -27.18 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 8 N -0.94 -57.15 13.28 21.45 0.28 -56.87 16 9 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.14 4.93 4.56 86.38 0.39 5.32 16 14 N -0.70 -18.13 4.95 -466.70 -2.31 -20.44 16 15 C 0.52 14.06 7.54 86.57 0.65 14.71 16 16 O -0.58 -20.43 13.33 -4.10 -0.05 -20.48 16 17 C -0.19 -3.29 10.01 23.43 0.23 -3.05 16 18 C -0.06 -1.05 9.94 24.52 0.24 -0.81 16 19 C 0.06 1.49 4.12 71.24 0.29 1.79 16 20 O -0.33 -8.12 10.12 -92.46 -0.94 -9.06 16 21 C 0.11 2.70 6.69 22.51 0.15 2.85 16 22 C -0.23 -5.66 9.04 22.36 0.20 -5.46 16 23 C -0.09 -1.92 10.04 22.25 0.22 -1.69 16 24 C -0.16 -2.73 10.04 22.28 0.22 -2.51 16 25 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 26 C -0.16 -3.27 9.99 22.37 0.22 -3.04 16 27 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 28 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 29 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 32 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.42 7.95 6.15 -92.71 -0.57 7.38 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.07 1.72 7.65 -2.38 -0.02 1.70 16 42 H 0.09 2.61 4.75 -2.40 -0.01 2.60 16 43 H 0.12 3.21 6.30 -2.91 -0.02 3.19 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 46 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.90 381.33 4.38 -67.52 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.39 Total: 21.08 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.97 Total: -27.19 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.03 Total: -77.31 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.99 Total: -29.54 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.90 4.38 -67.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.017 kcal (2) G-P(sol) polarization free energy of solvation -71.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds