Wall clock time and date at job start Tue Mar 31 2020 11:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99653 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00192 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99910 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00033 * 9 7 5 12 12 H 1.48501 * 109.47006 * 329.99902 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21617 * 120.00059 * 0.02562 * 15 14 13 17 17 C 1.47106 * 119.99803 * 180.02562 * 15 14 13 18 18 C 1.32993 * 119.99940 * 180.02562 * 17 15 14 19 19 C 1.50696 * 120.00161 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.46922 * 134.99644 * 19 18 17 21 21 C 1.35905 * 116.99501 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.05999 * 359.73236 * 21 20 19 23 23 C 1.38144 * 119.94583 * 179.74284 * 22 21 20 24 24 C 1.38268 * 120.05519 * 0.50461 * 23 22 21 25 25 C 1.38271 * 120.10803 * 359.77288 * 24 23 22 26 26 C 1.38141 * 120.05453 * 359.97376 * 25 24 23 27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 33 33 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 35 35 H 0.96997 * 120.00125 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 38 38 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 39 39 H 1.07995 * 119.99868 * 359.97438 * 17 15 14 40 40 H 1.08004 * 119.99872 * 0.02562 * 18 17 15 41 41 H 1.08994 * 109.47399 * 255.00429 * 19 18 17 42 42 H 1.09000 * 109.46987 * 15.00152 * 19 18 17 43 43 H 1.08002 * 120.02736 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.97433 * 180.27372 * 23 22 21 45 45 H 1.07996 * 119.94500 * 179.74356 * 24 23 22 46 46 H 1.08005 * 119.96808 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.02310 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 1.4325 0.1380 -4.8058 9 14 2.9451 -2.0005 -3.9033 10 1 2.0864 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1559 12 1 3.8650 -2.0900 -2.7410 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5775 -1.4792 3.7811 17 6 1.3867 0.2023 4.8706 18 6 1.7088 -0.2515 6.0786 19 6 1.2065 0.4589 7.3090 20 8 0.7199 -0.5018 8.2483 21 6 0.2270 -0.0232 9.4209 22 6 0.2171 1.3424 9.6648 23 6 -0.2894 1.8266 10.8553 24 6 -0.7766 0.9508 11.8079 25 6 -0.7625 -0.4112 11.5696 26 6 -0.2619 -0.9000 10.3785 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 1.6668 -0.1934 -5.6868 36 1 3.1299 -0.7217 1.2491 37 1 1.6766 -1.7490 1.2492 38 1 0.9937 0.7578 2.3564 39 1 0.7656 1.0801 4.7715 40 1 2.3311 -1.1287 6.1776 41 1 2.0210 1.0267 7.7587 42 1 0.3997 1.1377 7.0327 43 1 0.6016 2.0267 8.9229 44 1 -0.3014 2.8900 11.0438 45 1 -1.1683 1.3311 12.7397 46 1 -1.1432 -1.0933 12.3154 47 1 -0.2507 -1.9639 10.1931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493553420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:21 Heat of formation + Delta-G solvation = -46.635271 kcal Electronic energy + Delta-G solvation = -24749.402133 eV Core-core repulsion = 21090.460156 eV Total energy + Delta-G solvation = -3658.941977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54159 -39.72437 -37.93928 -37.28903 -34.17716 -33.67881 -32.11151 -31.44303 -30.30375 -28.19722 -27.59929 -26.58549 -26.03162 -23.37961 -22.82127 -22.32742 -21.12083 -19.87688 -18.82304 -18.22044 -17.39349 -16.85828 -16.45214 -16.30864 -16.04346 -15.54336 -15.12535 -14.87309 -14.35842 -14.14966 -13.84503 -13.75991 -13.59987 -13.54793 -13.17069 -13.01453 -12.74518 -12.37558 -12.28151 -12.05471 -12.00633 -11.62296 -11.27267 -11.24361 -11.15313 -11.02398 -10.63739 -10.51633 -10.05896 -9.99421 -9.84750 -9.75877 -9.49141 -9.44028 -9.01446 -8.83662 -8.63582 -8.54804 -6.05612 -4.03005 0.90119 0.99908 1.02811 2.73434 3.29127 3.30819 3.36604 3.38813 3.42396 3.42929 4.28314 4.41449 4.44586 4.50738 4.53800 4.66757 4.74507 4.88764 4.95379 5.01416 5.11231 5.21985 5.26921 5.36287 5.50156 5.56711 5.60911 5.86506 5.91088 5.97198 6.01847 6.07791 6.09398 6.10695 6.18457 6.28660 6.33932 6.44540 6.56999 6.65810 6.87540 6.97330 6.99243 7.02838 7.18244 7.34681 7.62315 7.77753 8.29590 8.51305 8.98191 9.57069 11.07064 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.001710 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.573279 B =16368.081978 C =16687.989644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.713 5.713 15 C 0.538 3.462 16 O -0.547 6.547 17 C -0.185 4.185 18 C -0.077 4.077 19 C 0.086 3.914 20 O -0.309 6.309 21 C 0.131 3.869 22 C -0.211 4.211 23 C -0.080 4.080 24 C -0.161 4.161 25 C -0.081 4.081 26 C -0.152 4.152 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 4.313 31.383 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.364 5.364 15 C 0.325 3.675 16 O -0.426 6.426 17 C -0.206 4.206 18 C -0.097 4.097 19 C 0.011 3.989 20 O -0.222 6.222 21 C 0.086 3.914 22 C -0.229 4.229 23 C -0.098 4.098 24 C -0.179 4.179 25 C -0.099 4.099 26 C -0.171 4.171 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.147 0.853 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.355 3.408 31.142 31.507 hybrid contribution 0.311 -0.134 -0.407 0.529 sum -3.044 3.274 30.735 31.058 Atomic orbital electron populations 1.21782 0.94755 1.01317 1.00796 1.20701 0.95866 0.95941 0.93916 1.21775 1.00471 0.95561 1.00789 1.19591 0.96296 0.95507 0.92581 1.21076 1.31886 1.13369 0.88623 0.90404 1.24999 0.95694 0.96750 0.95980 1.69899 1.45889 1.40576 0.97885 0.86856 0.81329 0.83905 0.77662 1.20373 1.21489 1.18994 1.21673 0.98975 0.96106 0.83071 1.46074 1.52783 1.31812 1.05720 1.18433 0.80744 0.84427 0.83855 1.90798 1.38343 1.26466 1.87039 1.22683 1.03065 1.02042 0.92790 1.23258 0.95911 0.99016 0.91542 1.21815 0.98929 0.90703 0.87445 1.86119 1.75423 1.35755 1.24946 1.19043 0.94197 0.92329 0.85870 1.21300 1.07283 0.94141 1.00200 1.20977 0.96173 0.99863 0.92831 1.21096 1.03251 0.93471 1.00085 1.21003 0.97284 0.95632 0.95970 1.20504 1.03403 0.99844 0.93317 0.94995 0.90833 0.93365 0.93377 0.90831 0.95007 0.96349 0.96791 0.92787 0.91681 0.91691 0.76350 0.85339 0.84397 0.90026 0.90724 0.85366 0.85732 0.85890 0.85302 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.60 8.20 -34.44 -0.28 -13.88 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.12 2.06 4.56 -4.04 -0.02 2.05 16 14 N -0.71 -9.69 4.96 -61.49 -0.30 -9.99 16 15 C 0.54 7.62 7.76 -12.66 -0.10 7.52 16 16 O -0.55 -9.95 16.22 5.26 0.09 -9.87 16 17 C -0.18 -1.84 9.63 -37.80 -0.36 -2.21 16 18 C -0.08 -0.74 9.47 -36.13 -0.34 -1.09 16 19 C 0.09 0.64 5.16 36.00 0.19 0.83 16 20 O -0.31 -3.03 10.12 -19.44 -0.20 -3.23 16 21 C 0.13 1.18 6.69 -39.22 -0.26 0.91 16 22 C -0.21 -1.56 9.04 -39.44 -0.36 -1.92 16 23 C -0.08 -0.52 10.04 -39.60 -0.40 -0.92 16 24 C -0.16 -1.01 10.04 -39.56 -0.40 -1.41 16 25 C -0.08 -0.54 10.04 -39.60 -0.40 -0.93 16 26 C -0.15 -1.25 9.99 -39.44 -0.39 -1.64 16 27 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.40 4.48 6.15 -40.82 -0.25 4.23 16 39 H 0.13 0.87 7.93 -52.49 -0.42 0.45 16 40 H 0.14 1.55 7.49 -52.48 -0.39 1.16 16 41 H 0.08 0.48 7.65 -51.93 -0.40 0.08 16 42 H 0.07 0.44 7.42 -51.93 -0.39 0.05 16 43 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 44 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 47 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -32.60 383.01 -8.53 -41.14 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.20 Total: 1.73 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.79 Total: -16.04 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.47 Total: -36.30 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.11 Total: -13.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.60 -8.53 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.497 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds