Wall clock time and date at job start Tue Mar 31 2020 11:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99653 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00192 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99910 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00033 * 9 7 5 12 12 H 1.48501 * 109.47006 * 329.99902 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21617 * 120.00059 * 0.02562 * 15 14 13 17 17 C 1.47106 * 119.99803 * 180.02562 * 15 14 13 18 18 C 1.32993 * 119.99940 * 180.02562 * 17 15 14 19 19 C 1.50696 * 120.00161 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.46922 * 134.99644 * 19 18 17 21 21 C 1.35905 * 116.99501 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.05999 * 359.73236 * 21 20 19 23 23 C 1.38144 * 119.94583 * 179.74284 * 22 21 20 24 24 C 1.38268 * 120.05519 * 0.50461 * 23 22 21 25 25 C 1.38271 * 120.10803 * 359.77288 * 24 23 22 26 26 C 1.38141 * 120.05453 * 359.97376 * 25 24 23 27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 33 33 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 35 35 H 0.96997 * 120.00125 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 38 38 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 39 39 H 1.07995 * 119.99868 * 359.97438 * 17 15 14 40 40 H 1.08004 * 119.99872 * 0.02562 * 18 17 15 41 41 H 1.08994 * 109.47399 * 255.00429 * 19 18 17 42 42 H 1.09000 * 109.46987 * 15.00152 * 19 18 17 43 43 H 1.08002 * 120.02736 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.97433 * 180.27372 * 23 22 21 45 45 H 1.07996 * 119.94500 * 179.74356 * 24 23 22 46 46 H 1.08005 * 119.96808 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.02310 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 1.4325 0.1380 -4.8058 9 14 2.9451 -2.0005 -3.9033 10 1 2.0864 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1559 12 1 3.8650 -2.0900 -2.7410 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5775 -1.4792 3.7811 17 6 1.3867 0.2023 4.8706 18 6 1.7088 -0.2515 6.0786 19 6 1.2065 0.4589 7.3090 20 8 0.7199 -0.5018 8.2483 21 6 0.2270 -0.0232 9.4209 22 6 0.2171 1.3424 9.6648 23 6 -0.2894 1.8266 10.8553 24 6 -0.7766 0.9508 11.8079 25 6 -0.7625 -0.4112 11.5696 26 6 -0.2619 -0.9000 10.3785 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 1.6668 -0.1934 -5.6868 36 1 3.1299 -0.7217 1.2491 37 1 1.6766 -1.7490 1.2492 38 1 0.9937 0.7578 2.3564 39 1 0.7656 1.0801 4.7715 40 1 2.3311 -1.1287 6.1776 41 1 2.0210 1.0267 7.7587 42 1 0.3997 1.1377 7.0327 43 1 0.6016 2.0267 8.9229 44 1 -0.3014 2.8900 11.0438 45 1 -1.1683 1.3311 12.7397 46 1 -1.1432 -1.0933 12.3154 47 1 -0.2507 -1.9639 10.1931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493553420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:20 Heat of formation + Delta-G solvation = -66.141350 kcal Electronic energy + Delta-G solvation = -24750.247980 eV Core-core repulsion = 21090.460156 eV Total energy + Delta-G solvation = -3659.787824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13369 -40.85717 -38.80736 -38.40033 -35.23246 -34.95523 -33.97669 -31.93034 -30.84948 -29.83020 -28.70220 -27.98514 -27.16874 -24.65649 -23.66297 -23.12657 -22.11985 -20.83304 -19.78565 -19.17639 -18.90397 -18.39934 -17.13968 -16.97417 -16.68675 -16.57968 -16.36240 -16.12965 -15.46983 -15.28479 -15.17798 -15.04900 -14.49168 -14.29487 -14.23788 -14.14972 -13.90907 -13.81427 -13.59252 -12.94366 -12.85529 -12.72643 -12.61734 -12.46170 -12.30654 -12.17173 -12.16225 -11.78611 -11.73692 -11.52334 -11.34408 -11.00484 -10.90051 -10.71181 -10.63559 -10.03175 -9.92909 -9.16958 -8.23142 -6.23127 0.18570 0.41570 0.50469 1.34961 1.37902 1.47703 1.99283 2.25886 2.38237 2.52002 2.86890 3.12327 3.60053 3.89093 3.91954 3.95090 4.02537 4.05139 4.15829 4.17121 4.24562 4.32465 4.34932 4.52514 4.57650 4.63253 4.70070 4.75089 4.77206 4.95105 5.01341 5.09687 5.10864 5.18821 5.26733 5.31062 5.36017 5.36926 5.40565 5.47305 5.50616 5.55892 5.63217 5.69379 5.76274 5.87576 6.37213 6.43612 6.58460 6.83684 7.22908 7.39663 8.92321 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.001710 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.573279 B =16368.081978 C =16687.989644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.137 3.863 14 N -0.702 5.702 15 C 0.534 3.466 16 O -0.595 6.595 17 C -0.185 4.185 18 C -0.070 4.070 19 C 0.087 3.913 20 O -0.333 6.333 21 C 0.108 3.892 22 C -0.216 4.216 23 C -0.087 4.087 24 C -0.165 4.165 25 C -0.086 4.086 26 C -0.174 4.174 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.416 0.584 39 H 0.171 0.829 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 5.440 34.286 34.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.013 3.987 14 N -0.354 5.354 15 C 0.324 3.676 16 O -0.478 6.478 17 C -0.205 4.205 18 C -0.090 4.090 19 C 0.013 3.987 20 O -0.248 6.248 21 C 0.064 3.936 22 C -0.235 4.235 23 C -0.105 4.105 24 C -0.183 4.183 25 C -0.104 4.104 26 C -0.193 4.193 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.254 0.746 39 H 0.188 0.812 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.800 4.561 34.066 34.580 hybrid contribution 0.407 -0.446 -1.210 1.352 sum -3.392 4.115 32.856 33.287 Atomic orbital electron populations 1.21716 0.93813 1.01242 1.01416 1.20567 0.96570 0.96246 0.92567 1.21706 1.00241 0.94736 1.01431 1.19571 0.95928 0.95457 0.93226 1.21371 1.30280 1.12327 0.90060 0.92854 1.25818 0.97423 0.99828 0.95924 1.70034 1.48068 1.42628 0.98418 0.85912 0.79892 0.80446 0.77907 1.19811 1.21405 1.17662 1.21295 0.98308 0.95604 0.83523 1.45872 1.52744 1.31997 1.04753 1.19104 0.79764 0.83870 0.84860 1.90782 1.40568 1.28754 1.87681 1.22657 1.03991 1.03246 0.90605 1.23304 0.94851 0.98083 0.92733 1.21921 1.00315 0.90290 0.86219 1.86067 1.75953 1.37051 1.25681 1.19273 0.95257 0.93292 0.85825 1.21552 1.07183 0.93695 1.01060 1.21340 0.95480 1.01181 0.92458 1.21454 1.02631 0.93319 1.00936 1.21292 0.96832 0.96476 0.95793 1.20717 1.04372 0.99978 0.94199 0.91025 0.93525 0.93805 0.93728 0.93542 0.90975 0.96763 0.96996 0.92862 0.92678 0.92792 0.74574 0.81194 0.86887 0.88197 0.88313 0.83591 0.83477 0.83748 0.83409 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 5 C -0.50 -27.17 8.20 25.60 0.21 -26.96 16 6 H 0.05 3.10 5.92 -2.91 -0.02 3.08 16 7 C 0.01 0.37 5.47 84.66 0.46 0.83 16 8 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 9 Si 0.93 44.54 27.47 68.60 1.88 46.42 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 13 C 0.14 4.34 4.56 86.38 0.39 4.74 16 14 N -0.70 -17.27 4.96 -466.69 -2.31 -19.58 16 15 C 0.53 14.17 7.76 86.57 0.67 14.84 16 16 O -0.60 -21.51 16.22 -4.08 -0.07 -21.58 16 17 C -0.18 -3.14 9.63 23.43 0.23 -2.91 16 18 C -0.07 -1.21 9.47 24.52 0.23 -0.98 16 19 C 0.09 1.08 5.16 71.23 0.37 1.44 16 20 O -0.33 -6.20 10.12 -92.48 -0.94 -7.13 16 21 C 0.11 1.82 6.69 22.50 0.15 1.97 16 22 C -0.22 -2.71 9.04 22.36 0.20 -2.51 16 23 C -0.09 -0.90 10.04 22.25 0.22 -0.68 16 24 C -0.17 -1.69 10.04 22.28 0.22 -1.47 16 25 C -0.09 -1.02 10.04 22.25 0.22 -0.80 16 26 C -0.17 -2.77 9.99 22.36 0.22 -2.55 16 27 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 28 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.75 6.62 -2.39 -0.02 1.74 16 32 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 34 H 0.01 0.53 7.57 -2.38 -0.02 0.52 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.42 7.61 6.15 -92.71 -0.57 7.04 16 39 H 0.17 1.44 7.93 -2.91 -0.02 1.42 16 40 H 0.11 2.56 7.49 -2.91 -0.02 2.53 16 41 H 0.10 0.88 7.65 -2.39 -0.02 0.86 16 42 H 0.10 0.77 7.42 -2.39 -0.02 0.75 16 43 H 0.15 1.16 6.30 -2.91 -0.02 1.14 16 44 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 46 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.64 383.01 4.24 -69.40 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.34 Total: 14.69 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 5.03 Total: -24.10 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -2.01 Total: -77.70 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.00 Total: -28.71 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -73.64 4.24 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds