Wall clock time and date at job start Tue Mar 31 2020 12:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 O 1.42900 * 109.47101 * 239.99682 * 2 1 3 5 5 C 1.52999 * 109.47060 * 119.99789 * 2 1 3 6 6 N 1.46902 * 109.47051 * 187.38949 * 5 2 1 7 7 C 1.46907 * 111.00110 * 81.30429 * 6 5 2 8 8 C 1.52998 * 109.47008 * 72.28880 * 7 6 5 9 9 C 1.53001 * 109.46874 * 174.94165 * 8 7 6 10 10 S 1.80997 * 109.47412 * 180.02562 * 9 8 7 11 11 C 1.76194 * 100.00073 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00456 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99669 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99935 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00220 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47455 * 89.99987 * 15 13 11 17 17 H 1.48506 * 109.46922 * 209.99878 * 15 13 11 18 18 H 1.48496 * 109.47062 * 329.99836 * 15 13 11 19 19 C 1.46900 * 111.00100 * 317.34697 * 6 5 2 20 20 C 1.53172 * 109.54039 * 292.97668 * 19 6 5 21 21 C 1.53095 * 109.16342 * 183.15151 * 20 19 6 22 22 O 1.42903 * 109.41549 * 57.60384 * 21 20 19 23 23 C 1.42906 * 114.09770 * 298.84910 * 22 21 20 24 24 C 1.53083 * 109.41721 * 61.15667 * 23 22 21 25 25 H 1.09003 * 109.47343 * 300.00317 * 1 2 3 26 26 H 1.09004 * 109.47370 * 60.00113 * 1 2 3 27 27 H 1.08998 * 109.47600 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46911 * 187.63401 * 3 2 1 29 29 H 1.09002 * 109.47235 * 307.62676 * 3 2 1 30 30 H 1.08992 * 109.47457 * 67.63308 * 3 2 1 31 31 H 0.96691 * 114.00243 * 305.64900 * 4 2 1 32 32 H 1.09000 * 109.47192 * 67.38649 * 5 2 1 33 33 H 1.09004 * 109.46749 * 307.38817 * 5 2 1 34 34 H 1.08992 * 109.46865 * 192.29189 * 7 6 5 35 35 H 1.09003 * 109.46551 * 312.28923 * 7 6 5 36 36 H 1.09004 * 109.47115 * 294.93211 * 8 7 6 37 37 H 1.08997 * 109.47143 * 54.93817 * 8 7 6 38 38 H 1.09003 * 109.46809 * 300.00142 * 9 8 7 39 39 H 1.09003 * 109.47287 * 59.99506 * 9 8 7 40 40 H 0.96999 * 120.00200 * 180.02562 * 14 13 11 41 41 H 1.09003 * 109.61421 * 53.19423 * 19 6 5 42 42 H 1.09003 * 109.52791 * 303.05616 * 20 19 6 43 43 H 1.08998 * 109.52473 * 63.25079 * 20 19 6 44 44 H 1.09003 * 109.47935 * 297.62941 * 21 20 19 45 45 H 1.09000 * 109.48491 * 177.59386 * 21 20 19 46 46 H 1.08991 * 109.48019 * 301.16652 * 23 22 21 47 47 H 1.09000 * 109.48552 * 181.14115 * 23 22 21 48 48 H 1.08998 * 109.52400 * 182.48573 * 24 23 22 49 49 H 1.09006 * 109.52768 * 62.29168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.4981 -0.5688 1.3416 7 6 3.8558 0.7323 1.9223 8 6 3.5327 0.7295 3.4178 9 6 4.0203 2.0360 4.0473 10 16 3.6388 2.0326 5.8166 11 6 4.2908 3.6044 6.2732 12 1 4.7514 4.2353 5.5276 13 6 4.2114 4.0323 7.5913 14 7 4.6981 5.2068 7.9324 15 14 3.4141 2.9413 8.8811 16 1 4.4434 2.0608 9.4896 17 1 2.8013 3.7885 9.9356 18 1 2.3637 2.1076 8.2434 19 6 4.1307 -0.7511 0.0284 20 6 3.9663 -2.2059 -0.4220 21 6 4.6957 -2.4053 -1.7531 22 8 6.0724 -2.0552 -1.5975 23 6 6.2893 -0.6932 -1.2231 24 6 5.6240 -0.4251 0.1293 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1213 1.4456 -0.1365 29 1 1.5695 1.9943 -0.8139 30 1 1.7923 1.9155 0.9503 31 1 1.6520 -1.5665 -1.2775 32 1 1.7885 -1.7799 1.1857 33 1 1.5727 -0.2893 2.1343 34 1 4.9214 0.9126 1.7811 35 1 3.2856 1.5194 1.4288 36 1 2.4553 0.6393 3.5566 37 1 4.0325 -0.1129 3.8959 38 1 5.0976 2.1264 3.9084 39 1 3.5205 2.8785 3.5691 40 1 4.6430 5.5057 8.8536 41 1 3.6612 -0.0889 -0.6990 42 1 4.3921 -2.8704 0.3298 43 1 2.9073 -2.4301 -0.5499 44 1 4.2430 -1.7701 -2.5145 45 1 4.6182 -3.4492 -2.0573 46 1 5.8575 -0.0356 -1.9775 47 1 7.3599 -0.5035 -1.1454 48 1 5.7505 0.6242 0.3958 49 1 6.0833 -1.0536 0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531177578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:34 Heat of formation + Delta-G solvation = -77.805960 kcal Electronic energy + Delta-G solvation = -26309.843407 eV Core-core repulsion = 22784.993719 eV Total energy + Delta-G solvation = -3524.849688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92450 -38.63272 -36.46698 -33.66963 -32.82784 -32.43218 -31.34965 -30.67345 -28.26979 -26.77372 -25.80559 -25.33144 -23.51668 -22.73176 -20.94790 -20.75679 -19.74041 -17.52675 -17.19016 -16.70278 -16.15322 -16.03811 -15.42983 -15.04987 -14.99839 -14.88140 -14.74642 -14.51089 -13.85530 -13.67372 -13.44129 -12.94337 -12.84641 -12.81750 -12.52665 -12.44086 -12.22013 -11.96033 -11.88309 -11.58589 -11.46063 -11.37584 -11.29453 -11.09606 -11.02223 -10.96609 -10.79351 -10.32868 -10.22662 -10.10781 -10.04927 -9.78033 -9.66328 -9.00150 -8.54969 -7.96484 -6.93278 -6.28170 -4.00048 3.01342 3.30515 3.45386 3.54526 3.72001 3.77217 3.95975 4.31949 4.47435 4.57376 4.64524 4.65147 4.81504 4.83821 4.89999 5.04046 5.09756 5.10755 5.19605 5.25314 5.29806 5.35558 5.39548 5.41534 5.47504 5.52466 5.56121 5.59236 5.68454 5.70434 5.73285 5.79849 5.80978 5.86297 5.93715 5.97260 6.03339 6.11251 6.23038 6.35894 6.51275 6.68191 7.03105 7.09955 7.15982 7.32804 7.95682 8.44482 9.17948 10.81393 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.003055 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.172426 B = 9163.775541 C = 9972.770238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 C -0.154 4.154 4 O -0.552 6.552 5 C 0.029 3.971 6 N -0.524 5.524 7 C 0.017 3.983 8 C -0.093 4.093 9 C -0.081 4.081 10 S -0.216 6.216 11 C -0.502 4.502 12 H 0.087 0.913 13 C 0.091 3.909 14 N -0.883 5.883 15 Si 0.862 3.138 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.238 1.238 19 C 0.070 3.930 20 C -0.133 4.133 21 C 0.064 3.936 22 O -0.386 6.386 23 C 0.066 3.934 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.369 0.631 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.270 0.730 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 -14.222 -21.360 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.054 3.946 3 C -0.211 4.211 4 O -0.361 6.361 5 C -0.100 4.100 6 N -0.247 5.247 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.230 4.230 10 S 0.012 5.988 11 C -0.649 4.649 12 H 0.105 0.895 13 C -0.117 4.117 14 N -0.520 5.520 15 Si 0.687 3.313 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.162 1.162 19 C -0.038 4.038 20 C -0.171 4.171 21 C -0.013 4.013 22 O -0.305 6.305 23 C -0.012 4.012 24 C -0.199 4.199 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.641 -14.804 -20.340 25.782 hybrid contribution -0.543 1.038 -0.201 1.188 sum -6.184 -13.767 -20.540 25.488 Atomic orbital electron populations 1.22472 0.95552 1.02429 1.03107 1.21971 0.93084 0.93456 0.86079 1.22354 1.02304 0.93789 1.02632 1.86706 1.70743 1.32709 1.45949 1.22926 0.89060 1.00644 0.97368 1.62180 1.07252 1.32101 1.23132 1.23008 1.02125 0.90409 0.95541 1.21300 1.01165 0.97193 0.93579 1.23010 1.02862 0.99168 0.97941 1.84160 1.80004 1.29113 1.05551 1.22128 1.43955 1.00467 0.98362 0.89483 1.24801 0.94259 0.94810 0.97815 1.69940 1.44295 1.18711 1.19022 0.86666 0.81450 0.81242 0.81957 1.19360 1.20155 1.16199 1.22158 0.93202 0.97452 0.90952 1.22199 1.00486 0.96947 0.97480 1.22554 0.81979 1.00434 0.96358 1.87906 1.25120 1.27943 1.89533 1.22539 1.00750 0.83107 0.94766 1.22496 0.96362 1.02429 0.98571 0.91233 0.91893 0.92277 0.90679 0.92171 0.90168 0.78083 0.90722 0.89583 0.90315 0.91808 0.92047 0.90934 0.91545 0.91748 0.91998 0.89131 0.91373 0.91226 0.93067 0.89433 0.93458 0.89019 0.90730 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.76 37.16 0.33 -0.93 16 2 C 0.10 0.78 0.99 -90.62 -0.09 0.69 16 3 C -0.15 -1.45 6.81 37.16 0.25 -1.19 16 4 O -0.55 -4.21 8.44 -35.23 -0.30 -4.51 16 5 C 0.03 0.27 4.52 -3.82 -0.02 0.25 16 6 N -0.52 -5.74 4.53 -226.42 -1.03 -6.76 16 7 C 0.02 0.22 4.06 -3.82 -0.02 0.20 16 8 C -0.09 -1.42 5.21 -26.73 -0.14 -1.56 16 9 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16 10 S -0.22 -5.27 19.41 -107.50 -2.09 -7.36 16 11 C -0.50 -14.59 10.04 30.94 0.31 -14.28 16 12 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 13 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 14 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 15 Si 0.86 21.64 27.74 -169.99 -4.72 16.93 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 19 C 0.07 0.69 1.14 -67.53 -0.08 0.62 16 20 C -0.13 -1.18 4.57 -26.59 -0.12 -1.30 16 21 C 0.06 0.56 6.84 37.21 0.25 0.81 16 22 O -0.39 -4.30 10.77 -35.23 -0.38 -4.68 16 23 C 0.07 0.64 6.84 37.20 0.25 0.89 16 24 C -0.16 -1.69 4.76 -26.60 -0.13 -1.81 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.76 4.50 -51.93 -0.23 0.53 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.08 0.79 7.02 -51.93 -0.36 0.43 16 31 H 0.37 1.83 7.31 45.59 0.33 2.17 16 32 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 33 H 0.09 0.89 6.31 -51.93 -0.33 0.56 16 34 H 0.08 1.00 5.33 -51.93 -0.28 0.72 16 35 H 0.06 0.75 3.30 -51.93 -0.17 0.57 16 36 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.29 8.14 -51.91 -0.42 0.87 16 39 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.09 0.93 3.49 -51.90 -0.18 0.75 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.49 4.63 -51.93 -0.24 0.25 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.77 6.19 -51.93 -0.32 0.45 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -31.68 365.98 -8.88 -40.56 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.59 Total: 2.77 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 0.93 Total: -16.36 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.25 Total: -32.87 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.68 Total: -9.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.09 Total: -7.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.68 -8.88 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531177578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.241 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds